Wall clock time and date at job start Mon Mar 30 2020 03:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99776 * 8 6 4 11 11 H 1.48494 * 109.47197 * 239.99736 * 8 6 4 12 12 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 13 13 O 1.21273 * 120.00521 * 240.00093 * 12 2 1 14 14 N 1.34786 * 119.99672 * 60.00403 * 12 2 1 15 15 C 1.47244 * 135.94083 * 359.63341 * 14 12 2 16 16 C 1.52809 * 87.62009 * 153.77613 * 15 14 12 17 17 C 1.47247 * 135.94514 * 179.97438 * 14 12 2 18 18 C 1.53350 * 115.67049 * 141.57052 * 16 15 14 19 19 C 1.55121 * 103.91587 * 108.97537 * 18 16 15 20 20 C 1.54974 * 102.89636 * 37.09213 * 19 18 16 21 21 C 1.52963 * 116.26799 * 269.32535 * 16 15 14 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 26 26 H 1.09005 * 113.50637 * 268.43395 * 15 14 12 27 27 H 1.08996 * 113.51685 * 39.00762 * 15 14 12 28 28 H 1.09001 * 113.51175 * 321.00276 * 17 14 12 29 29 H 1.09008 * 113.50636 * 91.49839 * 17 14 12 30 30 H 1.09001 * 110.53683 * 227.57719 * 18 16 15 31 31 H 1.08997 * 110.54405 * 350.36286 * 18 16 15 32 32 H 1.09003 * 110.72690 * 278.74110 * 19 18 16 33 33 H 1.08991 * 110.73104 * 155.44177 * 19 18 16 34 34 H 1.08998 * 110.47825 * 203.88159 * 20 19 18 35 35 H 1.08995 * 110.47876 * 81.25427 * 20 19 18 36 36 H 1.09005 * 110.11271 * 347.27080 * 21 16 15 37 37 H 1.08996 * 110.10717 * 108.91596 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1857 4.8162 11 1 1.1677 -1.5865 4.8165 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 0.9090 0.8671 -2.9872 16 6 1.7831 0.8108 -4.2393 17 6 1.9884 -0.6475 -3.8441 18 6 1.0557 1.0471 -5.5685 19 6 1.5511 2.4456 -6.0213 20 6 3.0370 2.4455 -5.5810 21 6 3.0337 1.6916 -4.2321 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7094 1.1619 3.4844 26 1 -0.1333 0.6073 -3.1726 27 1 1.0198 1.7905 -2.4188 28 1 3.0084 -1.0000 -3.9974 29 1 1.2416 -1.3220 -4.2633 30 1 1.3361 0.2874 -6.2982 31 1 -0.0238 1.0540 -5.4178 32 1 0.9978 3.2345 -5.5118 33 1 1.4693 2.5523 -7.1029 34 1 3.3949 3.4662 -5.4465 35 1 3.6510 1.9181 -6.3111 36 1 2.9874 2.4014 -3.4061 37 1 3.9271 1.0732 -4.1461 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597536949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:33 Heat of formation + Delta-G solvation = -17.418767 kcal Electronic energy + Delta-G solvation = -17304.607837 eV Core-core repulsion = 14661.368634 eV Total energy + Delta-G solvation = -2643.239203 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.57635 -37.79276 -35.32205 -33.69111 -30.69685 -28.97558 -28.57122 -25.86200 -25.06804 -24.73081 -21.83656 -20.81756 -18.66375 -18.16453 -16.32430 -15.91471 -15.71550 -15.29738 -14.76676 -14.47840 -14.00498 -13.48431 -13.28771 -12.79692 -12.53924 -12.27696 -11.66819 -11.50588 -11.19865 -11.11567 -11.10474 -10.98788 -10.80635 -10.62589 -10.61939 -10.58478 -10.22116 -10.03740 -9.92766 -8.92299 -8.56507 -8.30029 -8.03764 -6.00790 -4.03779 3.33922 3.40907 3.46886 3.55387 3.76131 4.29542 4.48085 4.53472 4.64242 5.08140 5.12679 5.31621 5.36854 5.41065 5.58463 5.59390 5.69939 5.75425 5.80030 5.85164 5.90774 5.94843 5.99637 6.10639 6.18536 6.28828 6.39830 6.57211 6.72733 6.91086 7.00233 7.53322 7.79107 8.05181 8.25376 8.55648 9.05534 9.28101 9.61579 11.06941 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045500 B = 0.005692 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.241232 B = 4917.988887 C = 5033.935711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.037 3.963 3 H 0.050 0.950 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.548 3.452 13 O -0.546 6.546 14 N -0.653 5.653 15 C 0.119 3.881 16 C -0.103 4.103 17 C 0.109 3.891 18 C -0.107 4.107 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.097 4.097 22 H 0.014 0.986 23 H 0.029 0.971 24 H 0.092 0.908 25 H 0.260 0.740 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.185 4.873 -16.421 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.016 3.984 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.341 3.659 13 O -0.422 6.422 14 N -0.391 5.391 15 C -0.005 4.005 16 C -0.104 4.104 17 C -0.014 4.014 18 C -0.146 4.146 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.134 4.134 22 H 0.033 0.967 23 H 0.048 0.952 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.800 4.336 -15.940 16.539 hybrid contribution 0.157 -0.447 0.864 0.985 sum -0.643 3.889 -15.076 15.583 Atomic orbital electron populations 1.21746 0.96554 0.99682 1.00965 1.18810 0.94148 0.96711 0.88744 0.93188 1.21211 1.30849 1.12773 0.89004 0.90785 1.24950 0.95132 0.95086 0.99092 1.69884 1.37260 1.23136 1.23390 0.86396 0.78627 0.79797 0.82442 1.19551 1.21020 1.21035 1.21748 0.78171 0.83575 0.82385 1.90535 1.38900 1.27137 1.85607 1.50025 1.52909 1.31820 1.04336 1.22932 0.95115 0.91240 0.91216 1.22275 0.96985 0.96211 0.94906 1.22791 1.01241 0.95034 0.82361 1.22161 0.99704 0.97233 0.95453 1.22520 0.96066 0.97222 1.00285 1.22422 0.96663 1.00129 0.96901 1.21777 0.96212 0.97821 0.97593 0.96715 0.95223 0.88902 0.93042 0.90453 0.90453 0.91205 0.90866 0.91145 0.91180 0.91352 0.91820 0.91747 0.91814 0.91072 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.85 37.16 0.33 -2.83 16 2 C 0.04 0.96 2.51 -92.92 -0.23 0.73 16 3 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16 4 C -0.50 -14.69 8.37 -34.44 -0.29 -14.98 16 5 H 0.07 2.30 6.75 -52.49 -0.35 1.95 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.68 11.32 55.43 0.63 -25.05 16 8 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 9 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.55 13.50 7.40 -10.98 -0.08 13.42 16 13 O -0.55 -15.35 16.23 5.56 0.09 -15.26 16 14 N -0.65 -12.49 3.62 -185.03 -0.67 -13.16 16 15 C 0.12 1.75 5.96 -7.77 -0.05 1.70 16 16 C -0.10 -1.26 1.24 -154.72 -0.19 -1.45 16 17 C 0.11 1.64 7.88 -7.94 -0.06 1.57 16 18 C -0.11 -1.00 6.24 -25.43 -0.16 -1.16 16 19 C -0.12 -1.04 6.92 -24.57 -0.17 -1.21 16 20 C -0.12 -1.14 6.85 -24.88 -0.17 -1.31 16 21 C -0.10 -1.15 6.33 -25.95 -0.16 -1.32 16 22 H 0.01 0.29 6.30 -51.93 -0.33 -0.04 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.08 1.02 7.90 -51.93 -0.41 0.61 16 27 H 0.08 1.16 7.94 -51.93 -0.41 0.74 16 28 H 0.07 1.08 7.91 -51.93 -0.41 0.67 16 29 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 30 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 31 H 0.07 0.61 7.83 -51.93 -0.41 0.20 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.91 7.82 -51.93 -0.41 0.50 16 37 H 0.07 0.87 7.79 -51.93 -0.40 0.46 16 LS Contribution 295.62 15.07 4.45 4.45 Total: -1.00 -32.27 295.62 -7.81 -40.09 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -5.96 Total: -2.99 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: -1.33 Total: -5.29 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.04 Total: -38.22 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: 0.09 Total: -15.26 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.27 -7.81 -40.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597536949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.668 kcal (2) G-P(sol) polarization free energy of solvation -32.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds