Wall clock time and date at job start Mon Mar 30 2020 03:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 5 5 H 1.07999 * 120.00019 * 120.00027 * 4 2 1 6 6 C 1.37879 * 119.99908 * 300.00133 * 4 2 1 7 7 N 1.31510 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46997 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47438 * 119.99776 * 8 6 4 11 11 H 1.48494 * 109.47197 * 239.99736 * 8 6 4 12 12 C 1.50698 * 109.47184 * 239.99558 * 2 1 3 13 13 O 1.21273 * 120.00521 * 240.00093 * 12 2 1 14 14 N 1.34786 * 119.99672 * 60.00403 * 12 2 1 15 15 C 1.47244 * 135.94083 * 359.63341 * 14 12 2 16 16 C 1.52809 * 87.62009 * 153.77613 * 15 14 12 17 17 C 1.47247 * 135.94514 * 179.97438 * 14 12 2 18 18 C 1.53350 * 115.67049 * 141.57052 * 16 15 14 19 19 C 1.55121 * 103.91587 * 108.97537 * 18 16 15 20 20 C 1.54974 * 102.89636 * 37.09213 * 19 18 16 21 21 C 1.52963 * 116.26799 * 269.32535 * 16 15 14 22 22 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 25 25 H 0.96999 * 120.00396 * 180.02562 * 7 6 4 26 26 H 1.09005 * 113.50637 * 268.43395 * 15 14 12 27 27 H 1.08996 * 113.51685 * 39.00762 * 15 14 12 28 28 H 1.09001 * 113.51175 * 321.00276 * 17 14 12 29 29 H 1.09008 * 113.50636 * 91.49839 * 17 14 12 30 30 H 1.09001 * 110.53683 * 227.57719 * 18 16 15 31 31 H 1.08997 * 110.54405 * 350.36286 * 18 16 15 32 32 H 1.09003 * 110.72690 * 278.74110 * 19 18 16 33 33 H 1.08991 * 110.73104 * 155.44177 * 19 18 16 34 34 H 1.08998 * 110.47825 * 203.88159 * 20 19 18 35 35 H 1.08995 * 110.47876 * 81.25427 * 20 19 18 36 36 H 1.09005 * 110.11271 * 347.27080 * 21 16 15 37 37 H 1.08996 * 110.10717 * 108.91596 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1195 4.0080 9 1 3.1473 -2.2863 3.6039 10 1 3.1471 -0.1857 4.8162 11 1 1.1677 -1.5865 4.8165 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 0.9090 0.8671 -2.9872 16 6 1.7831 0.8108 -4.2393 17 6 1.9884 -0.6475 -3.8441 18 6 1.0557 1.0471 -5.5685 19 6 1.5511 2.4456 -6.0213 20 6 3.0370 2.4455 -5.5810 21 6 3.0337 1.6916 -4.2321 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 0.7094 1.1619 3.4844 26 1 -0.1333 0.6073 -3.1726 27 1 1.0198 1.7905 -2.4188 28 1 3.0084 -1.0000 -3.9974 29 1 1.2416 -1.3220 -4.2633 30 1 1.3361 0.2874 -6.2982 31 1 -0.0238 1.0540 -5.4178 32 1 0.9978 3.2345 -5.5118 33 1 1.4693 2.5523 -7.1029 34 1 3.3949 3.4662 -5.4465 35 1 3.6510 1.9181 -6.3111 36 1 2.9874 2.4014 -3.4061 37 1 3.9271 1.0732 -4.1461 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597536949.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:33 Heat of formation + Delta-G solvation = -37.428145 kcal Electronic energy + Delta-G solvation = -17305.475509 eV Core-core repulsion = 14661.368634 eV Total energy + Delta-G solvation = -2644.106875 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.85516 -39.50461 -36.46373 -35.81564 -32.73747 -30.20718 -29.55657 -27.38209 -26.94609 -26.00523 -23.66992 -21.57346 -20.15897 -19.34833 -18.41543 -17.59807 -17.12929 -16.73749 -16.33532 -15.73622 -15.47277 -15.03418 -14.54970 -14.42224 -14.01185 -13.57436 -13.51560 -12.99296 -12.80751 -12.65377 -12.49721 -12.31848 -12.26694 -12.04035 -11.95089 -11.86903 -11.68772 -11.33308 -11.14499 -11.06492 -10.62858 -10.30148 -9.59368 -8.19078 -6.30417 1.37185 1.38309 1.52594 1.83724 2.05214 2.42838 3.09727 3.21137 3.60708 3.74802 4.02180 4.16130 4.34483 4.45339 4.50490 4.59532 4.61287 4.67353 4.70314 4.80457 4.86793 4.91788 4.92909 5.05308 5.07507 5.14874 5.18385 5.30861 5.34818 5.44808 5.48591 5.57430 5.68154 5.91737 6.18554 6.73428 6.87413 7.36130 7.44812 8.87274 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.045500 B = 0.005692 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.241232 B = 4917.988887 C = 5033.935711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.034 3.966 3 H 0.033 0.967 4 C -0.533 4.533 5 H 0.045 0.955 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.959 3.041 9 H -0.281 1.281 10 H -0.271 1.271 11 H -0.270 1.270 12 C 0.543 3.457 13 O -0.596 6.596 14 N -0.659 5.659 15 C 0.111 3.889 16 C -0.083 4.083 17 C 0.103 3.897 18 C -0.101 4.101 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.104 4.104 22 H 0.050 0.950 23 H 0.019 0.981 24 H 0.072 0.928 25 H 0.266 0.734 26 H 0.103 0.897 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.290 5.750 -18.171 19.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.013 3.987 3 H 0.051 0.949 4 C -0.571 4.571 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.784 3.216 9 H -0.206 1.206 10 H -0.197 1.197 11 H -0.196 1.196 12 C 0.336 3.664 13 O -0.477 6.477 14 N -0.394 5.394 15 C -0.011 4.011 16 C -0.083 4.083 17 C -0.019 4.019 18 C -0.139 4.139 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.142 4.142 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.091 0.909 25 H 0.076 0.924 26 H 0.121 0.879 27 H 0.091 0.909 28 H 0.078 0.922 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.942 5.267 -17.745 18.612 hybrid contribution 0.508 -0.663 1.340 1.579 sum -1.433 4.604 -16.404 17.099 Atomic orbital electron populations 1.21536 0.94924 0.99189 1.01680 1.18704 0.95425 0.95444 0.89157 0.94885 1.21308 1.31814 1.12774 0.91200 0.93635 1.25630 0.95072 0.95746 1.01465 1.69953 1.37125 1.23507 1.24401 0.85493 0.78453 0.78534 0.79104 1.20591 1.19667 1.19564 1.21295 0.78173 0.83032 0.83933 1.90489 1.41255 1.29206 1.86778 1.49967 1.52384 1.32700 1.04348 1.23336 0.96453 0.89530 0.91813 1.22167 0.96738 0.93751 0.95680 1.23160 1.01542 0.97605 0.79598 1.22181 1.00131 0.98224 0.93323 1.22528 0.94896 0.96607 1.01592 1.22404 0.97906 1.00105 0.95144 1.21839 0.95560 0.97654 0.99105 0.93093 0.96135 0.90918 0.92439 0.87876 0.90876 0.92176 0.88508 0.89719 0.89713 0.91145 0.89774 0.91109 0.90930 0.92485 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.57 8.85 71.98 0.64 -4.93 16 2 C 0.03 1.82 2.51 -12.28 -0.03 1.79 16 3 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 4 C -0.53 -32.48 8.37 25.60 0.21 -32.27 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.16 5.30 84.66 0.45 1.61 16 7 N -0.91 -52.41 11.32 21.45 0.24 -52.17 16 8 Si 0.96 46.14 29.54 68.60 2.03 48.17 16 9 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 12 C 0.54 27.59 7.40 87.65 0.65 28.24 16 13 O -0.60 -35.11 16.23 -3.01 -0.05 -35.16 16 14 N -0.66 -25.08 3.62 -857.71 -3.10 -28.18 16 15 C 0.11 3.04 5.96 83.56 0.50 3.54 16 16 C -0.08 -1.83 1.24 -52.31 -0.07 -1.90 16 17 C 0.10 2.95 7.88 83.45 0.66 3.61 16 18 C -0.10 -1.45 6.24 31.44 0.20 -1.26 16 19 C -0.12 -1.53 6.92 32.00 0.22 -1.31 16 20 C -0.12 -1.87 6.85 31.79 0.22 -1.65 16 21 C -0.10 -2.37 6.33 31.10 0.20 -2.17 16 22 H 0.05 2.01 6.30 -2.39 -0.02 2.00 16 23 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 24 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 25 H 0.27 14.35 8.31 -92.71 -0.77 13.58 16 26 H 0.10 2.37 7.90 -2.38 -0.02 2.35 16 27 H 0.07 2.09 7.94 -2.39 -0.02 2.08 16 28 H 0.06 1.85 7.91 -2.39 -0.02 1.83 16 29 H 0.10 2.36 8.14 -2.38 -0.02 2.35 16 30 H 0.08 1.06 8.13 -2.39 -0.02 1.04 16 31 H 0.08 1.05 7.83 -2.39 -0.02 1.03 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.45 7.82 -2.38 -0.02 1.43 16 37 H 0.05 1.33 7.79 -2.39 -0.02 1.31 16 Total: -1.00 -72.29 295.62 3.99 -68.30 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.03 Total: 5.72 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: 3.84 Total: -6.69 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.86 Total: -80.35 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.05 Total: -35.16 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -72.29 3.99 -68.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597536949.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.874 kcal (2) G-P(sol) polarization free energy of solvation -72.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds