Wall clock time and date at job start Mon Mar 30 2020 03:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29454 * 118.17122 * 2 1 4 4 C 1.49966 * 124.61191 * 180.90239 * 3 2 1 5 5 H 1.09005 * 109.31201 * 101.07954 * 4 3 2 6 6 C 1.52997 * 109.31970 * 220.70170 * 4 3 2 7 7 C 1.53103 * 110.40275 * 340.99109 * 4 3 2 8 8 N 1.47337 * 107.88812 * 45.45874 * 7 4 3 9 9 C 1.34773 * 121.36494 * 118.18571 * 8 7 4 10 10 O 1.21285 * 119.99779 * 0.04892 * 9 8 7 11 11 C 1.50693 * 120.00057 * 180.02562 * 9 8 7 12 12 H 1.08997 * 109.47107 * 60.00825 * 11 9 8 13 13 C 1.53004 * 109.47396 * 300.00750 * 11 9 8 14 14 C 1.50702 * 109.47491 * 180.02562 * 11 9 8 15 15 H 1.08002 * 119.99541 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00591 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99677 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00378 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47002 * 59.99971 * 18 16 14 20 20 H 1.48491 * 109.47162 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47136 * 300.00222 * 18 16 14 22 22 C 1.46999 * 117.25732 * 298.23514 * 8 7 4 23 23 H 1.08995 * 109.47112 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47437 * 119.99553 * 1 2 3 25 25 H 1.09001 * 109.46672 * 239.99287 * 1 2 3 26 26 H 1.08002 * 117.69691 * 0.89063 * 3 2 1 27 27 H 1.09002 * 109.47153 * 59.99974 * 6 4 3 28 28 H 1.09001 * 109.46832 * 300.00165 * 6 4 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.77781 * 165.05617 * 7 4 3 31 31 H 1.08997 * 109.78013 * 285.85662 * 7 4 3 32 32 H 1.08995 * 109.47296 * 59.99690 * 13 11 9 33 33 H 1.08995 * 109.47185 * 180.02562 * 13 11 9 34 34 H 1.09000 * 109.46657 * 299.99468 * 13 11 9 35 35 H 0.96997 * 119.99733 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.52274 * 283.01580 * 22 8 7 37 37 H 1.09001 * 109.52273 * 162.83633 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1182 1.1412 0.0000 4 6 3.6083 1.3095 -0.0194 5 1 3.9303 1.5539 -1.0318 6 6 4.0016 2.4469 0.9252 7 6 4.2972 0.0178 0.4288 8 7 3.6462 -1.1068 -0.2656 9 6 4.3328 -1.9021 -1.1097 10 8 5.5117 -1.6992 -1.3100 11 6 3.6360 -3.0435 -1.8042 12 1 2.8206 -2.6544 -2.4139 13 6 3.0752 -4.0103 -0.7593 14 6 4.6190 -3.7712 -2.6848 15 1 5.6458 -3.4403 -2.7359 16 6 4.2076 -4.8592 -3.4250 17 7 2.9571 -5.2617 -3.3630 18 14 5.4259 -5.7606 -4.5170 19 1 6.5367 -6.2912 -3.6864 20 1 4.7393 -6.8855 -5.2012 21 1 5.9705 -4.8222 -5.5309 22 6 2.2168 -1.3250 -0.0007 23 1 -0.3633 1.0276 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 -0.3633 -0.5140 0.8899 26 1 1.5123 2.0351 0.0149 27 1 3.6747 2.2081 1.9373 28 1 3.5258 3.3715 0.5984 29 1 5.0844 2.5717 0.9127 30 1 5.3540 0.0525 0.1644 31 1 4.1899 -0.1025 1.5068 32 1 2.3643 -3.4843 -0.1222 33 1 2.5715 -4.8361 -1.2617 34 1 3.8907 -4.3995 -0.1497 35 1 2.6677 -6.0274 -3.8835 36 1 2.0954 -1.8038 0.9710 37 1 1.7957 -1.9634 -0.7774 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597611205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:43 Heat of formation + Delta-G solvation = -29.367992 kcal Electronic energy + Delta-G solvation = -17455.515988 eV Core-core repulsion = 14811.758628 eV Total energy + Delta-G solvation = -2643.757360 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.70918 -37.29316 -34.10282 -33.30543 -33.16124 -30.36467 -26.86326 -26.75431 -25.51035 -25.06098 -22.10090 -21.15354 -18.91796 -17.45632 -16.41517 -15.93160 -15.44111 -14.78400 -14.56014 -14.36465 -13.71638 -13.41856 -13.12883 -12.84122 -12.64558 -12.35147 -12.18396 -11.87081 -11.68972 -11.45454 -11.33833 -11.02164 -10.93572 -10.70103 -10.43984 -10.33607 -10.22880 -9.92538 -8.95708 -8.67939 -8.55978 -8.26913 -8.04476 -6.00657 -4.03397 2.33309 3.38166 3.40210 3.45494 3.66104 3.72896 4.48894 4.73859 4.93774 5.07126 5.29544 5.33064 5.43884 5.49401 5.60342 5.64376 5.70980 5.81648 5.88725 5.94373 5.98509 6.06077 6.09096 6.25453 6.38596 6.61840 6.70971 6.86373 6.93773 7.06669 7.12179 7.49970 7.77797 8.01441 8.14639 8.42525 9.04775 9.24588 9.61736 11.07071 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034018 B = 0.006848 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.904157 B = 4087.598508 C = 4627.213277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.140 4.140 3 C -0.149 4.149 4 C -0.077 4.077 5 H 0.080 0.920 6 C -0.138 4.138 7 C 0.115 3.885 8 N -0.628 5.628 9 C 0.526 3.474 10 O -0.546 6.546 11 C 0.032 3.968 12 H 0.051 0.949 13 C -0.143 4.143 14 C -0.500 4.500 15 H 0.073 0.927 16 C 0.058 3.942 17 N -0.897 5.897 18 Si 0.901 3.099 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.147 3.853 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.101 0.899 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.022 0.978 33 H 0.093 0.907 34 H 0.030 0.970 35 H 0.261 0.739 36 H 0.071 0.929 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.443 10.953 8.640 14.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.141 4.141 3 C -0.167 4.167 4 C -0.096 4.096 5 H 0.098 0.902 6 C -0.196 4.196 7 C -0.009 4.009 8 N -0.363 5.363 9 C 0.317 3.683 10 O -0.422 6.422 11 C 0.011 3.989 12 H 0.069 0.931 13 C -0.200 4.200 14 C -0.539 4.539 15 H 0.091 0.909 16 C -0.142 4.142 17 N -0.537 5.537 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.202 1.202 22 C 0.024 3.976 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.119 0.881 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.111 0.889 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.892 10.882 8.425 14.606 hybrid contribution 0.416 -0.401 -0.547 0.796 sum -4.476 10.481 7.879 13.855 Atomic orbital electron populations 1.20877 0.91847 1.02130 1.02438 1.21347 0.96098 0.95500 1.01153 1.21790 0.95550 0.96868 1.02495 1.20334 0.93133 0.95785 1.00359 0.90166 1.21729 1.01310 0.97395 0.99156 1.21556 0.98474 0.85013 0.95824 1.48411 1.09784 1.31390 1.46732 1.21998 0.87160 0.82564 0.76532 1.90514 1.16782 1.72010 1.62867 1.18833 0.96608 0.89529 0.93964 0.93092 1.21978 0.98970 1.01802 0.97282 1.21116 0.96715 1.12271 1.23790 0.90893 1.24941 0.95390 0.97024 0.96853 1.69861 1.15425 1.26672 1.41723 0.86506 0.81087 0.78973 0.80577 1.20210 1.21370 1.20215 1.20577 0.80663 0.94165 1.02163 0.92240 0.91231 0.91648 0.88141 0.92607 0.92622 0.92389 0.89208 0.92130 0.95895 0.88867 0.95087 0.92940 0.91127 0.87560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 10.00 36.01 0.36 -0.89 16 2 C -0.14 -1.91 5.92 -100.82 -0.60 -2.51 16 3 C -0.15 -1.95 8.64 -35.95 -0.31 -2.26 16 4 C -0.08 -1.05 3.13 -92.07 -0.29 -1.34 16 5 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 6 C -0.14 -1.44 9.11 37.16 0.34 -1.11 16 7 C 0.11 1.85 5.82 -3.53 -0.02 1.83 16 8 N -0.63 -11.97 2.97 -174.14 -0.52 -12.49 16 9 C 0.53 12.59 7.11 -10.99 -0.08 12.51 16 10 O -0.55 -14.76 14.95 5.55 0.08 -14.68 16 11 C 0.03 0.80 1.84 -92.92 -0.17 0.63 16 12 H 0.05 1.35 7.57 -51.93 -0.39 0.96 16 13 C -0.14 -3.31 8.54 37.16 0.32 -2.99 16 14 C -0.50 -14.49 8.37 -34.44 -0.29 -14.77 16 15 H 0.07 2.23 6.75 -52.49 -0.35 1.88 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 17 N -0.90 -25.32 11.32 55.43 0.63 -24.70 16 18 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.15 2.36 4.60 -5.11 -0.02 2.34 16 23 H 0.06 0.56 7.56 -51.93 -0.39 0.17 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.10 1.13 7.56 -52.49 -0.40 0.74 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.59 7.07 -51.93 -0.37 1.22 16 31 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.02 0.44 4.83 -51.93 -0.25 0.18 16 33 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.07 1.03 7.79 -51.93 -0.40 0.63 16 37 H 0.11 1.84 5.26 -51.93 -0.27 1.57 16 LS Contribution 292.34 15.07 4.41 4.41 Total: -1.00 -31.15 292.34 -6.94 -38.09 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.66 Total: -0.70 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.86 Total: -7.01 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.11 Total: -37.19 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.08 Total: -14.68 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.15 -6.94 -38.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597611205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.725 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds