Wall clock time and date at job start Mon Mar 30 2020 03:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.29454 * 118.17122 * 2 1 4 4 C 1.49966 * 124.61191 * 180.90239 * 3 2 1 5 5 H 1.09005 * 109.31201 * 101.07954 * 4 3 2 6 6 C 1.52997 * 109.31970 * 220.70170 * 4 3 2 7 7 C 1.53103 * 110.40275 * 340.99109 * 4 3 2 8 8 N 1.47337 * 107.88812 * 45.45874 * 7 4 3 9 9 C 1.34773 * 121.36494 * 118.18571 * 8 7 4 10 10 O 1.21285 * 119.99779 * 0.04892 * 9 8 7 11 11 C 1.50693 * 120.00057 * 180.02562 * 9 8 7 12 12 H 1.08997 * 109.47107 * 60.00825 * 11 9 8 13 13 C 1.53004 * 109.47396 * 300.00750 * 11 9 8 14 14 C 1.50702 * 109.47491 * 180.02562 * 11 9 8 15 15 H 1.08002 * 119.99541 * 0.02562 * 14 11 9 16 16 C 1.37877 * 120.00591 * 180.02562 * 14 11 9 17 17 N 1.31518 * 119.99677 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00378 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47002 * 59.99971 * 18 16 14 20 20 H 1.48491 * 109.47162 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47136 * 300.00222 * 18 16 14 22 22 C 1.46999 * 117.25732 * 298.23514 * 8 7 4 23 23 H 1.08995 * 109.47112 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47437 * 119.99553 * 1 2 3 25 25 H 1.09001 * 109.46672 * 239.99287 * 1 2 3 26 26 H 1.08002 * 117.69691 * 0.89063 * 3 2 1 27 27 H 1.09002 * 109.47153 * 59.99974 * 6 4 3 28 28 H 1.09001 * 109.46832 * 300.00165 * 6 4 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.77781 * 165.05617 * 7 4 3 31 31 H 1.08997 * 109.78013 * 285.85662 * 7 4 3 32 32 H 1.08995 * 109.47296 * 59.99690 * 13 11 9 33 33 H 1.08995 * 109.47185 * 180.02562 * 13 11 9 34 34 H 1.09000 * 109.46657 * 299.99468 * 13 11 9 35 35 H 0.96997 * 119.99733 * 180.02562 * 17 16 14 36 36 H 1.09004 * 109.52274 * 283.01580 * 22 8 7 37 37 H 1.09001 * 109.52273 * 162.83633 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1182 1.1412 0.0000 4 6 3.6083 1.3095 -0.0194 5 1 3.9303 1.5539 -1.0318 6 6 4.0016 2.4469 0.9252 7 6 4.2972 0.0178 0.4288 8 7 3.6462 -1.1068 -0.2656 9 6 4.3328 -1.9021 -1.1097 10 8 5.5117 -1.6992 -1.3100 11 6 3.6360 -3.0435 -1.8042 12 1 2.8206 -2.6544 -2.4139 13 6 3.0752 -4.0103 -0.7593 14 6 4.6190 -3.7712 -2.6848 15 1 5.6458 -3.4403 -2.7359 16 6 4.2076 -4.8592 -3.4250 17 7 2.9571 -5.2617 -3.3630 18 14 5.4259 -5.7606 -4.5170 19 1 6.5367 -6.2912 -3.6864 20 1 4.7393 -6.8855 -5.2012 21 1 5.9705 -4.8222 -5.5309 22 6 2.2168 -1.3250 -0.0007 23 1 -0.3633 1.0276 0.0005 24 1 -0.3634 -0.5138 -0.8900 25 1 -0.3633 -0.5140 0.8899 26 1 1.5123 2.0351 0.0149 27 1 3.6747 2.2081 1.9373 28 1 3.5258 3.3715 0.5984 29 1 5.0844 2.5717 0.9127 30 1 5.3540 0.0525 0.1644 31 1 4.1899 -0.1025 1.5068 32 1 2.3643 -3.4843 -0.1222 33 1 2.5715 -4.8361 -1.2617 34 1 3.8907 -4.3995 -0.1497 35 1 2.6677 -6.0274 -3.8835 36 1 2.0954 -1.8038 0.9710 37 1 1.7957 -1.9634 -0.7774 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597611205.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:43 Heat of formation + Delta-G solvation = -47.922215 kcal Electronic energy + Delta-G solvation = -17456.320559 eV Core-core repulsion = 14811.758628 eV Total energy + Delta-G solvation = -2644.561932 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.26267 -38.82117 -35.98775 -34.73669 -34.49499 -32.33118 -28.04321 -27.77300 -27.11369 -26.97824 -23.88235 -22.29445 -20.56916 -18.74967 -18.42175 -17.62613 -17.13074 -16.37513 -16.09686 -15.87326 -15.05298 -14.80377 -14.58904 -14.38592 -13.95107 -13.68516 -13.41391 -13.17734 -12.98059 -12.84855 -12.77776 -12.64455 -12.56815 -12.32217 -12.21617 -12.03800 -11.98060 -11.46997 -11.05908 -10.62284 -10.30244 -9.71415 -9.57148 -8.16589 -6.27303 1.29160 1.39661 1.41505 1.50073 1.85140 2.12569 2.44786 3.12472 3.65234 3.84166 3.97001 4.11287 4.24064 4.41757 4.42158 4.56779 4.65647 4.71572 4.73034 4.82056 4.87751 4.93826 4.94778 4.99464 5.10513 5.19817 5.22447 5.33574 5.44843 5.57177 5.69371 5.72276 5.92979 6.02549 6.19784 6.57069 6.80456 7.36433 7.45376 8.89263 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034018 B = 0.006848 C = 0.006050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.904157 B = 4087.598508 C = 4627.213277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.149 4.149 3 C -0.148 4.148 4 C -0.076 4.076 5 H 0.060 0.940 6 C -0.130 4.130 7 C 0.109 3.891 8 N -0.621 5.621 9 C 0.522 3.478 10 O -0.590 6.590 11 C 0.030 3.970 12 H 0.037 0.963 13 C -0.127 4.127 14 C -0.534 4.534 15 H 0.046 0.954 16 C 0.021 3.979 17 N -0.909 5.909 18 Si 0.956 3.044 19 H -0.276 1.276 20 H -0.271 1.271 21 H -0.277 1.277 22 C 0.139 3.861 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.128 0.872 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.019 0.981 35 H 0.266 0.734 36 H 0.091 0.909 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.844 11.986 9.728 16.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.150 4.150 3 C -0.166 4.166 4 C -0.095 4.095 5 H 0.078 0.922 6 C -0.188 4.188 7 C -0.013 4.013 8 N -0.354 5.354 9 C 0.313 3.687 10 O -0.470 6.470 11 C 0.009 3.991 12 H 0.055 0.945 13 C -0.185 4.185 14 C -0.572 4.572 15 H 0.064 0.936 16 C -0.178 4.178 17 N -0.548 5.548 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.196 1.196 21 H -0.203 1.203 22 C 0.017 3.983 23 H 0.097 0.903 24 H 0.083 0.917 25 H 0.098 0.902 26 H 0.146 0.854 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.346 11.938 9.546 16.551 hybrid contribution 0.824 -0.684 -0.855 1.371 sum -5.522 11.254 8.691 15.254 Atomic orbital electron populations 1.20883 0.89480 1.03560 1.02895 1.21406 0.97644 0.94069 1.01892 1.21995 0.95142 0.97808 1.01689 1.20322 0.93657 0.95384 1.00110 0.92175 1.21681 1.01650 0.96599 0.98846 1.21809 0.97445 0.85238 0.96801 1.48351 1.11064 1.30931 1.45074 1.21659 0.86663 0.82982 0.77406 1.90480 1.18451 1.73245 1.64794 1.18726 0.95576 0.90514 0.94257 0.94534 1.21795 0.99031 1.00869 0.96821 1.21260 0.96343 1.13720 1.25884 0.93570 1.25594 0.97134 0.97366 0.97721 1.69934 1.16281 1.26784 1.41811 0.85643 0.79169 0.78134 0.78881 1.20162 1.19605 1.20273 1.20776 0.78769 0.96187 1.02551 0.90346 0.91737 0.90203 0.85387 0.91358 0.90846 0.92268 0.91435 0.89696 0.91988 0.90885 0.96176 0.92474 0.89135 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 10.00 71.24 0.71 -1.32 16 2 C -0.15 -3.68 5.92 -15.03 -0.09 -3.77 16 3 C -0.15 -3.46 8.64 27.00 0.23 -3.22 16 4 C -0.08 -1.94 3.13 -11.74 -0.04 -1.97 16 5 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 6 C -0.13 -2.34 9.11 71.98 0.66 -1.69 16 7 C 0.11 3.45 5.82 86.25 0.50 3.95 16 8 N -0.62 -23.60 2.97 -823.24 -2.44 -26.04 16 9 C 0.52 25.76 7.11 87.66 0.62 26.38 16 10 O -0.59 -33.39 14.95 -3.04 -0.05 -33.43 16 11 C 0.03 1.59 1.84 -12.29 -0.02 1.57 16 12 H 0.04 2.01 7.57 -2.39 -0.02 1.99 16 13 C -0.13 -5.97 8.54 71.98 0.61 -5.35 16 14 C -0.53 -31.99 8.37 25.60 0.21 -31.78 16 15 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 16 C 0.02 1.21 5.30 84.65 0.45 1.66 16 17 N -0.91 -51.59 11.32 21.45 0.24 -51.35 16 18 Si 0.96 45.72 29.54 68.60 2.03 47.74 16 19 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 22 C 0.14 4.25 4.60 85.42 0.39 4.65 16 23 H 0.08 1.15 7.56 -2.39 -0.02 1.13 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.13 2.33 7.56 -2.91 -0.02 2.31 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.07 2.44 7.07 -2.39 -0.02 2.42 16 31 H 0.08 2.27 8.08 -2.39 -0.02 2.25 16 32 H 0.06 2.35 4.83 -2.39 -0.01 2.33 16 33 H 0.07 3.73 6.07 -2.39 -0.01 3.71 16 34 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.09 2.42 7.79 -2.38 -0.02 2.40 16 37 H 0.09 3.08 5.26 -2.39 -0.01 3.06 16 Total: -1.00 -69.07 292.34 5.07 -64.00 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 1.04 Total: 9.98 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 4.25 Total: -10.90 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -2.20 Total: -77.39 kcal Atomic # 8 Polarization: -33.39 SS G_CDS: -0.05 Total: -33.43 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -69.07 5.07 -64.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597611205.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.075 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds