Wall clock time and date at job start Mon Mar 30 2020 03:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29453 * 118.17160 * 2 1 4 4 C 1.49972 * 124.61209 * 179.16552 * 3 2 1 5 5 H 1.08995 * 109.31335 * 258.71012 * 4 3 2 6 6 C 1.52998 * 109.31716 * 139.27888 * 4 3 2 7 7 C 1.53103 * 110.40222 * 18.99492 * 4 3 2 8 8 N 1.47345 * 107.88370 * 314.53882 * 7 4 3 9 9 C 1.34770 * 121.37262 * 242.05836 * 8 7 4 10 10 O 1.21278 * 120.00509 * 359.71856 * 9 8 7 11 11 C 1.50704 * 119.99674 * 179.71757 * 9 8 7 12 12 H 1.09000 * 109.47144 * 299.99359 * 11 9 8 13 13 C 1.53002 * 109.47093 * 60.00029 * 11 9 8 14 14 C 1.50707 * 109.47034 * 180.02562 * 11 9 8 15 15 H 1.08001 * 120.00099 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00064 * 180.02562 * 14 11 9 17 17 N 1.31513 * 119.99968 * 359.97438 * 16 14 11 18 18 Si 1.86797 * 120.00317 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.46887 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47564 * 119.99543 * 18 16 14 21 21 H 1.48498 * 109.47096 * 240.00063 * 18 16 14 22 22 C 1.47006 * 117.24688 * 61.78583 * 8 7 4 23 23 H 1.08996 * 109.47145 * 269.97691 * 1 2 3 24 24 H 1.08998 * 109.47107 * 29.98409 * 1 2 3 25 25 H 1.09008 * 109.46923 * 149.97735 * 1 2 3 26 26 H 1.07999 * 117.69505 * 359.18316 * 3 2 1 27 27 H 1.09003 * 109.46889 * 60.00469 * 6 4 3 28 28 H 1.08995 * 109.47295 * 179.97438 * 6 4 3 29 29 H 1.08996 * 109.47728 * 300.00183 * 6 4 3 30 30 H 1.09000 * 109.77709 * 194.94405 * 7 4 3 31 31 H 1.09001 * 109.78068 * 74.13827 * 7 4 3 32 32 H 1.08999 * 109.46671 * 179.97438 * 13 11 9 33 33 H 1.08991 * 109.46757 * 299.99924 * 13 11 9 34 34 H 1.08997 * 109.46986 * 60.00262 * 13 11 9 35 35 H 0.96997 * 120.00162 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.52081 * 76.96479 * 22 8 7 37 37 H 1.08997 * 109.51740 * 197.08482 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1182 1.1412 0.0000 4 6 3.6083 1.3095 0.0180 5 1 3.9310 1.5569 1.0292 6 6 4.0006 2.4471 -0.9268 7 6 4.2967 0.0179 -0.4314 8 7 3.6464 -1.1069 0.2635 9 6 4.3325 -1.8995 1.1104 10 8 5.5115 -1.6969 1.3099 11 6 3.6347 -3.0376 1.8096 12 1 2.8198 -2.6454 2.4180 13 6 3.0728 -4.0079 0.7686 14 6 4.6171 -3.7621 2.6936 15 1 5.6441 -3.4316 2.7437 16 6 4.2050 -4.8473 3.4375 17 7 2.9545 -5.2500 3.3761 18 14 5.4227 -5.7456 4.5327 19 1 6.7558 -5.1003 4.4240 20 1 4.9577 -5.6877 5.9417 21 1 5.5231 -7.1634 4.1024 22 6 2.2168 -1.3250 -0.0005 23 1 -0.3633 -0.0004 1.0276 24 1 -0.3633 0.8901 -0.5136 25 1 -0.3633 -0.8899 -0.5142 26 1 1.5122 2.0351 -0.0136 27 1 3.5252 3.3717 -0.5992 28 1 5.0833 2.5719 -0.9154 29 1 3.6727 2.2087 -1.9386 30 1 5.3539 0.0525 -0.1680 31 1 4.1883 -0.1021 -1.5094 32 1 2.5685 -4.8313 1.2743 33 1 2.3622 -3.4837 0.1296 34 1 3.8877 -4.4002 0.1603 35 1 2.6645 -6.0132 3.8997 36 1 2.0947 -1.8034 -0.9723 37 1 1.7966 -1.9646 0.7756 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597611206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:46 Heat of formation + Delta-G solvation = -29.405679 kcal Electronic energy + Delta-G solvation = -17456.476591 eV Core-core repulsion = 14812.717597 eV Total energy + Delta-G solvation = -2643.758995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.70803 -37.29102 -34.10533 -33.30382 -33.15998 -30.36624 -26.86695 -26.75328 -25.51025 -25.06545 -22.10059 -21.15411 -18.91524 -17.44751 -16.41567 -15.93709 -15.44789 -14.77605 -14.54724 -14.34944 -13.70938 -13.42631 -13.12133 -12.83940 -12.65930 -12.37005 -12.22089 -11.86550 -11.69826 -11.45003 -11.34365 -11.01217 -10.96822 -10.65827 -10.44827 -10.33064 -10.22739 -9.92860 -8.93565 -8.66586 -8.56325 -8.27452 -8.04443 -6.01087 -4.03663 2.33097 3.33840 3.41143 3.49256 3.66282 3.73115 4.48941 4.74163 4.94951 5.07040 5.29420 5.32884 5.43769 5.48927 5.59644 5.62144 5.73785 5.82487 5.88359 5.93602 5.98405 6.06245 6.08917 6.26029 6.38571 6.61759 6.71035 6.86226 6.93684 7.06483 7.12233 7.49887 7.77623 8.01493 8.14570 8.42363 9.05448 9.24655 9.61675 11.06718 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033984 B = 0.006852 C = 0.006054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.711522 B = 4085.308031 C = 4624.230319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.139 4.139 3 C -0.150 4.150 4 C -0.077 4.077 5 H 0.080 0.920 6 C -0.138 4.138 7 C 0.115 3.885 8 N -0.628 5.628 9 C 0.525 3.475 10 O -0.546 6.546 11 C 0.031 3.969 12 H 0.051 0.949 13 C -0.143 4.143 14 C -0.499 4.499 15 H 0.074 0.926 16 C 0.058 3.942 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.147 3.853 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.022 0.978 34 H 0.030 0.970 35 H 0.260 0.740 36 H 0.071 0.929 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 10.966 -8.668 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.140 4.140 3 C -0.168 4.168 4 C -0.096 4.096 5 H 0.098 0.902 6 C -0.196 4.196 7 C -0.008 4.008 8 N -0.363 5.363 9 C 0.317 3.683 10 O -0.421 6.421 11 C 0.010 3.990 12 H 0.069 0.931 13 C -0.200 4.200 14 C -0.537 4.537 15 H 0.092 0.908 16 C -0.143 4.143 17 N -0.537 5.537 18 Si 0.727 3.273 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 C 0.024 3.976 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.041 0.959 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.857 10.899 -8.460 14.627 hybrid contribution 0.385 -0.412 0.565 0.798 sum -4.472 10.487 -7.895 13.867 Atomic orbital electron populations 1.20852 0.91881 1.02238 1.02313 1.21351 0.96078 0.95480 1.01103 1.21747 0.95543 0.96937 1.02606 1.20328 0.93125 0.95778 1.00347 0.90190 1.21730 1.01307 0.97398 0.99164 1.21553 0.98476 0.84994 0.95821 1.48418 1.09811 1.31487 1.46615 1.21996 0.87175 0.82529 0.76567 1.90514 1.16769 1.71880 1.62985 1.18850 0.96624 0.89597 0.93949 0.93086 1.21977 0.98979 1.01780 0.97301 1.21200 0.96770 1.12368 1.23377 0.90774 1.24944 0.95388 0.97031 0.96904 1.69876 1.15422 1.26778 1.41606 0.86407 0.81604 0.79282 0.80034 1.19572 1.21059 1.21048 1.20614 0.80652 0.94186 1.02149 0.91311 0.92137 0.91655 0.88159 0.92628 0.92394 0.92612 0.89210 0.92108 0.88861 0.95892 0.95082 0.93053 0.91099 0.87525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.88 36.01 0.36 -0.89 16 2 C -0.14 -1.90 5.92 -100.82 -0.60 -2.49 16 3 C -0.15 -1.97 8.61 -35.95 -0.31 -2.28 16 4 C -0.08 -1.05 3.13 -92.07 -0.29 -1.34 16 5 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 6 C -0.14 -1.45 9.11 37.16 0.34 -1.11 16 7 C 0.11 1.85 5.82 -3.53 -0.02 1.83 16 8 N -0.63 -11.97 2.97 -174.13 -0.52 -12.49 16 9 C 0.53 12.58 7.11 -10.99 -0.08 12.51 16 10 O -0.55 -14.76 14.95 5.56 0.08 -14.68 16 11 C 0.03 0.78 1.84 -92.92 -0.17 0.61 16 12 H 0.05 1.35 7.57 -51.93 -0.39 0.96 16 13 C -0.14 -3.31 8.54 37.16 0.32 -2.99 16 14 C -0.50 -14.43 8.38 -34.44 -0.29 -14.72 16 15 H 0.07 2.27 6.75 -52.49 -0.35 1.92 16 16 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 17 N -0.90 -25.33 11.32 55.43 0.63 -24.70 16 18 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 19 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.15 2.35 4.57 -5.10 -0.02 2.33 16 23 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.06 0.56 7.89 -51.93 -0.41 0.15 16 25 H 0.06 0.65 8.08 -51.92 -0.42 0.23 16 26 H 0.10 1.13 7.80 -52.49 -0.41 0.72 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.59 7.07 -51.93 -0.37 1.22 16 31 H 0.06 0.87 8.08 -51.93 -0.42 0.45 16 32 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 33 H 0.02 0.44 4.83 -51.93 -0.25 0.19 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.07 1.04 7.80 -51.93 -0.41 0.63 16 37 H 0.11 1.85 5.24 -51.93 -0.27 1.57 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -31.22 292.66 -6.96 -38.18 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.69 Total: -0.75 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.86 Total: -7.00 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.11 Total: -37.19 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.08 Total: -14.68 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.22 -6.96 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597611206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.776 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds