Wall clock time and date at job start Mon Mar 30 2020 03:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 115.54593 * 2 1 4 4 C 1.53069 * 117.51208 * 145.71287 * 2 1 3 5 5 C 1.52994 * 117.49784 * 214.32474 * 2 1 3 6 6 H 1.08995 * 117.50331 * 359.97438 * 5 2 1 7 7 C 1.50699 * 117.49455 * 145.00216 * 5 2 1 8 8 O 1.21277 * 120.00354 * 359.91049 * 7 5 2 9 9 N 1.34782 * 119.99829 * 179.90892 * 7 5 2 10 10 C 1.46497 * 119.99964 * 179.97438 * 9 7 5 11 11 H 1.09001 * 110.01673 * 326.39111 * 10 9 7 12 12 C 1.53871 * 110.07488 * 87.81070 * 10 9 7 13 13 C 1.54269 * 106.59813 * 119.30490 * 12 10 9 14 14 C 1.54885 * 104.19677 * 23.61322 * 13 12 10 15 15 H 1.09002 * 110.75709 * 80.37016 * 14 13 12 16 16 C 1.50697 * 110.91369 * 203.67045 * 14 13 12 17 17 H 1.07991 * 120.00281 * 115.95471 * 16 14 13 18 18 C 1.37879 * 119.99754 * 295.94927 * 16 14 13 19 19 N 1.31512 * 120.00423 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99968 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46829 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47212 * 120.00085 * 20 18 16 23 23 H 1.48503 * 109.47191 * 240.00477 * 20 18 16 24 24 C 1.54271 * 110.03233 * 205.00147 * 10 9 7 25 25 H 1.08999 * 109.47321 * 205.67295 * 1 2 3 26 26 H 1.09002 * 109.47411 * 325.67612 * 1 2 3 27 27 H 1.09000 * 109.46777 * 85.67811 * 1 2 3 28 28 H 1.09007 * 117.49494 * 359.97438 * 4 2 1 29 29 H 1.08999 * 117.51459 * 214.95755 * 4 2 1 30 30 H 0.97004 * 120.00030 * 0.02562 * 9 7 5 31 31 H 1.09000 * 110.03307 * 238.59242 * 12 10 9 32 32 H 1.08999 * 110.03179 * 359.97438 * 12 10 9 33 33 H 1.09002 * 110.48538 * 264.93327 * 13 12 10 34 34 H 1.08996 * 110.48433 * 142.29362 * 13 12 10 35 35 H 0.96996 * 120.00433 * 179.97438 * 19 18 16 36 36 H 1.09002 * 110.48367 * 98.38019 * 24 10 9 37 37 H 1.09002 * 110.59675 * 335.79132 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2371 -1.1217 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 1.6113 -1.8584 -1.2684 7 6 3.5290 -0.7805 -1.4613 8 8 3.9705 0.3475 -1.4031 9 7 4.1945 -1.7300 -2.1486 10 6 5.4507 -1.3991 -2.8258 11 1 5.4182 -0.3730 -3.1920 12 6 6.6345 -1.5764 -1.8589 13 6 7.5524 -2.6504 -2.4783 14 6 7.2216 -2.6065 -3.9908 15 1 7.7417 -1.7806 -4.4762 16 6 7.5647 -3.9151 -4.6548 17 1 6.7839 -4.5206 -5.0905 18 6 8.8756 -4.3392 -4.7060 19 7 9.8266 -3.6021 -4.1750 20 14 9.3011 -5.9610 -5.5297 21 1 8.0609 -6.5948 -6.0447 22 1 10.2350 -5.7135 -6.6573 23 1 9.9455 -6.8637 -4.5421 24 6 5.6906 -2.3716 -3.9991 25 1 -0.3634 -0.9262 0.4452 26 1 -0.3634 0.8487 0.5795 27 1 -0.3633 0.0774 -1.0248 28 1 1.6120 -1.8593 1.2682 29 1 3.1724 -0.8763 1.2678 30 1 3.8412 -2.6322 -2.1955 31 1 7.1764 -0.6363 -1.7558 32 1 6.2747 -1.9083 -0.8850 33 1 7.3224 -3.6328 -2.0659 34 1 8.5998 -2.4005 -2.3095 35 1 10.7487 -3.9006 -4.2108 36 1 5.3794 -1.9181 -4.9401 37 1 5.1599 -3.3094 -3.8346 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597715394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:23 Heat of formation + Delta-G solvation = -38.282229 kcal Electronic energy + Delta-G solvation = -16681.223694 eV Core-core repulsion = 14037.079783 eV Total energy + Delta-G solvation = -2644.143911 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90217 -37.64527 -36.30394 -33.60867 -31.95149 -29.01459 -28.16099 -27.13351 -24.37285 -23.29875 -21.04154 -20.09119 -19.48146 -19.02242 -17.23287 -16.57988 -15.54329 -14.88066 -14.70558 -14.45502 -14.25735 -13.62568 -13.40077 -12.93853 -12.61591 -12.33734 -12.14140 -11.79158 -11.56796 -11.13027 -11.02479 -10.94363 -10.55637 -10.45543 -10.30056 -10.18507 -9.95402 -9.54861 -9.51141 -9.19950 -8.81266 -8.57522 -8.37515 -6.01477 -4.04871 2.68449 3.28832 3.37111 3.39192 3.41623 3.78448 4.43159 4.62337 4.66302 4.75508 5.14073 5.15182 5.30655 5.45667 5.54534 5.55814 5.61991 5.67715 5.82715 5.83577 5.87681 6.17056 6.32569 6.37035 6.59816 6.67270 6.74718 6.91309 6.94033 7.26529 7.32575 7.70456 7.84709 7.88247 8.01923 8.42209 8.52402 8.97750 9.59408 11.07977 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.055948 B = 0.004485 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.345778 B = 6241.784423 C = 6395.481931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.125 4.125 3 H 0.116 0.884 4 C -0.150 4.150 5 C -0.190 4.190 6 H 0.121 0.879 7 C 0.537 3.463 8 O -0.549 6.549 9 N -0.713 5.713 10 C 0.137 3.863 11 H 0.079 0.921 12 C -0.134 4.134 13 C -0.101 4.101 14 C 0.051 3.949 15 H 0.034 0.966 16 C -0.514 4.514 17 H 0.056 0.944 18 C 0.062 3.938 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.121 4.121 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.398 0.602 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.259 0.741 36 H 0.052 0.948 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.077 2.974 7.622 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.144 4.144 3 H 0.134 0.866 4 C -0.187 4.187 5 C -0.211 4.211 6 H 0.139 0.861 7 C 0.323 3.677 8 O -0.427 6.427 9 N -0.363 5.363 10 C 0.034 3.966 11 H 0.098 0.902 12 C -0.173 4.173 13 C -0.139 4.139 14 C 0.032 3.968 15 H 0.052 0.948 16 C -0.552 4.552 17 H 0.074 0.926 18 C -0.139 4.139 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.159 4.159 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.232 0.768 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.548 3.788 7.670 16.877 hybrid contribution 0.234 -1.447 -0.472 1.540 sum -14.314 2.341 7.198 16.192 Atomic orbital electron populations 1.21394 0.92423 1.02045 1.02103 1.22364 0.95000 0.95193 1.01812 0.86567 1.23091 1.03079 1.01430 0.91150 1.22347 0.98145 1.04925 0.95689 0.86131 1.19637 0.84475 0.84997 0.78600 1.90666 1.69032 1.21282 1.61692 1.46278 1.24753 1.12849 1.52421 1.21876 0.81845 0.99920 0.93006 0.90247 1.22640 0.96581 1.00436 0.97618 1.22316 0.98371 0.95296 0.97958 1.19557 0.87765 0.97020 0.92420 0.94831 1.21130 0.92604 1.04822 1.36661 0.92590 1.24986 0.96562 0.97023 0.95365 1.69967 1.00270 1.37493 1.44918 0.86584 0.78397 0.84027 0.79254 1.19829 1.21074 1.21091 1.22761 1.01476 0.96863 0.94829 0.92440 0.91812 0.92006 0.87959 0.88308 0.76779 0.92627 0.93248 0.93492 0.91411 0.93104 0.92872 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.19 37.16 0.38 -0.59 16 2 C -0.13 -1.32 5.92 -90.58 -0.54 -1.86 16 3 H 0.12 1.44 7.67 -51.93 -0.40 1.04 16 4 C -0.15 -1.51 9.88 -26.69 -0.26 -1.77 16 5 C -0.19 -2.19 5.91 -91.77 -0.54 -2.73 16 6 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 7 C 0.54 8.45 7.61 -10.98 -0.08 8.37 16 8 O -0.55 -10.72 15.91 5.56 0.09 -10.63 16 9 N -0.71 -11.07 4.99 -52.72 -0.26 -11.33 16 10 C 0.14 2.55 3.24 -66.81 -0.22 2.33 16 11 H 0.08 1.57 7.57 -51.93 -0.39 1.18 16 12 C -0.13 -2.66 6.59 -25.61 -0.17 -2.83 16 13 C -0.10 -2.34 5.67 -25.07 -0.14 -2.48 16 14 C 0.05 1.25 2.76 -89.78 -0.25 1.00 16 15 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 16 C -0.51 -13.81 8.52 -34.44 -0.29 -14.10 16 17 H 0.06 1.48 7.78 -52.49 -0.41 1.07 16 18 C 0.06 1.71 5.35 -17.82 -0.10 1.62 16 19 N -0.89 -25.35 12.22 55.43 0.68 -24.67 16 20 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.12 -2.41 5.94 -25.07 -0.15 -2.56 16 25 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.40 5.19 8.36 -40.82 -0.34 4.85 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.93 7.92 -51.93 -0.41 0.52 16 33 H 0.05 1.10 8.05 -51.93 -0.42 0.69 16 34 H 0.07 1.72 7.51 -51.93 -0.39 1.33 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 1.16 7.64 -51.93 -0.40 0.76 16 LS Contribution 305.31 15.07 4.60 4.60 Total: -1.00 -30.14 305.31 -8.36 -38.49 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.08 Total: 3.16 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -2.36 Total: -15.61 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.41 Total: -36.00 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.63 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.14 -8.36 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597715394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.211 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds