Wall clock time and date at job start Mon Mar 30 2020 03:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 115.54593 * 2 1 4 4 C 1.53069 * 117.51208 * 145.71287 * 2 1 3 5 5 C 1.52994 * 117.49784 * 214.32474 * 2 1 3 6 6 H 1.08995 * 117.50331 * 359.97438 * 5 2 1 7 7 C 1.50699 * 117.49455 * 145.00216 * 5 2 1 8 8 O 1.21277 * 120.00354 * 359.91049 * 7 5 2 9 9 N 1.34782 * 119.99829 * 179.90892 * 7 5 2 10 10 C 1.46497 * 119.99964 * 179.97438 * 9 7 5 11 11 H 1.09001 * 110.01673 * 326.39111 * 10 9 7 12 12 C 1.53871 * 110.07488 * 87.81070 * 10 9 7 13 13 C 1.54269 * 106.59813 * 119.30490 * 12 10 9 14 14 C 1.54885 * 104.19677 * 23.61322 * 13 12 10 15 15 H 1.09002 * 110.75709 * 80.37016 * 14 13 12 16 16 C 1.50697 * 110.91369 * 203.67045 * 14 13 12 17 17 H 1.07991 * 120.00281 * 115.95471 * 16 14 13 18 18 C 1.37879 * 119.99754 * 295.94927 * 16 14 13 19 19 N 1.31512 * 120.00423 * 0.02562 * 18 16 14 20 20 Si 1.86806 * 119.99968 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46829 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47212 * 120.00085 * 20 18 16 23 23 H 1.48503 * 109.47191 * 240.00477 * 20 18 16 24 24 C 1.54271 * 110.03233 * 205.00147 * 10 9 7 25 25 H 1.08999 * 109.47321 * 205.67295 * 1 2 3 26 26 H 1.09002 * 109.47411 * 325.67612 * 1 2 3 27 27 H 1.09000 * 109.46777 * 85.67811 * 1 2 3 28 28 H 1.09007 * 117.49494 * 359.97438 * 4 2 1 29 29 H 1.08999 * 117.51459 * 214.95755 * 4 2 1 30 30 H 0.97004 * 120.00030 * 0.02562 * 9 7 5 31 31 H 1.09000 * 110.03307 * 238.59242 * 12 10 9 32 32 H 1.08999 * 110.03179 * 359.97438 * 12 10 9 33 33 H 1.09002 * 110.48538 * 264.93327 * 13 12 10 34 34 H 1.08996 * 110.48433 * 142.29362 * 13 12 10 35 35 H 0.96996 * 120.00433 * 179.97438 * 19 18 16 36 36 H 1.09002 * 110.48367 * 98.38019 * 24 10 9 37 37 H 1.09002 * 110.59675 * 335.79132 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2371 -1.1217 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 1.6113 -1.8584 -1.2684 7 6 3.5290 -0.7805 -1.4613 8 8 3.9705 0.3475 -1.4031 9 7 4.1945 -1.7300 -2.1486 10 6 5.4507 -1.3991 -2.8258 11 1 5.4182 -0.3730 -3.1920 12 6 6.6345 -1.5764 -1.8589 13 6 7.5524 -2.6504 -2.4783 14 6 7.2216 -2.6065 -3.9908 15 1 7.7417 -1.7806 -4.4762 16 6 7.5647 -3.9151 -4.6548 17 1 6.7839 -4.5206 -5.0905 18 6 8.8756 -4.3392 -4.7060 19 7 9.8266 -3.6021 -4.1750 20 14 9.3011 -5.9610 -5.5297 21 1 8.0609 -6.5948 -6.0447 22 1 10.2350 -5.7135 -6.6573 23 1 9.9455 -6.8637 -4.5421 24 6 5.6906 -2.3716 -3.9991 25 1 -0.3634 -0.9262 0.4452 26 1 -0.3634 0.8487 0.5795 27 1 -0.3633 0.0774 -1.0248 28 1 1.6120 -1.8593 1.2682 29 1 3.1724 -0.8763 1.2678 30 1 3.8412 -2.6322 -2.1955 31 1 7.1764 -0.6363 -1.7558 32 1 6.2747 -1.9083 -0.8850 33 1 7.3224 -3.6328 -2.0659 34 1 8.5998 -2.4005 -2.3095 35 1 10.7487 -3.9006 -4.2108 36 1 5.3794 -1.9181 -4.9401 37 1 5.1599 -3.3094 -3.8346 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597715394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:22 Heat of formation + Delta-G solvation = -56.102913 kcal Electronic energy + Delta-G solvation = -16681.996456 eV Core-core repulsion = 14037.079783 eV Total energy + Delta-G solvation = -2644.916673 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.15186 -39.07157 -37.50016 -35.28618 -33.78969 -30.08995 -29.74622 -28.67136 -26.07754 -24.63318 -21.99101 -21.49184 -20.93345 -20.64350 -18.50373 -18.38216 -17.04720 -16.62150 -16.18826 -15.85913 -15.56216 -14.76359 -14.56350 -14.19423 -14.00011 -13.67061 -13.64797 -13.04960 -12.90070 -12.81412 -12.62768 -12.38536 -12.29191 -12.11993 -11.69373 -11.42468 -11.29644 -11.11493 -11.02785 -10.82602 -10.71339 -10.47069 -10.00313 -8.10406 -6.20808 1.42336 1.44469 1.51781 1.55460 2.20238 2.45460 2.88778 3.20769 3.69734 3.81376 3.88906 3.94326 4.01967 4.17554 4.25632 4.44276 4.66060 4.74716 4.78648 4.88034 4.90993 4.97073 5.00764 5.04038 5.08373 5.14403 5.23091 5.28126 5.38908 5.44915 5.65042 5.66765 5.91259 5.98135 6.36738 6.63240 6.90290 7.29807 7.47259 8.98736 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.055948 B = 0.004485 C = 0.004377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.345778 B = 6241.784423 C = 6395.481931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.128 4.128 3 H 0.090 0.910 4 C -0.138 4.138 5 C -0.195 4.195 6 H 0.151 0.849 7 C 0.532 3.468 8 O -0.593 6.593 9 N -0.705 5.705 10 C 0.149 3.851 11 H 0.067 0.933 12 C -0.124 4.124 13 C -0.090 4.090 14 C 0.039 3.961 15 H -0.001 1.001 16 C -0.528 4.528 17 H 0.060 0.940 18 C 0.010 3.990 19 N -0.922 5.922 20 Si 0.955 3.045 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.106 4.106 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.134 0.866 29 H 0.083 0.917 30 H 0.414 0.586 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.041 0.959 34 H 0.036 0.964 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.499 1.486 8.086 19.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.147 4.147 3 H 0.108 0.892 4 C -0.175 4.175 5 C -0.216 4.216 6 H 0.168 0.832 7 C 0.321 3.679 8 O -0.474 6.474 9 N -0.355 5.355 10 C 0.044 3.956 11 H 0.085 0.915 12 C -0.162 4.162 13 C -0.128 4.128 14 C 0.020 3.980 15 H 0.018 0.982 16 C -0.566 4.566 17 H 0.078 0.922 18 C -0.189 4.189 19 N -0.561 5.561 20 Si 0.781 3.219 21 H -0.187 1.187 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.144 4.144 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.082 0.918 28 H 0.152 0.848 29 H 0.102 0.898 30 H 0.251 0.749 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.004 2.274 8.134 18.986 hybrid contribution 1.016 -0.927 -0.608 1.504 sum -15.988 1.347 7.526 17.722 Atomic orbital electron populations 1.21394 0.90016 1.03402 1.02598 1.22421 0.96727 0.93952 1.01602 0.89187 1.23207 1.02808 1.01606 0.89889 1.22374 0.96261 1.06419 0.96501 0.83155 1.20399 0.85482 0.84128 0.77902 1.90651 1.70429 1.23147 1.63154 1.46098 1.23574 1.13818 1.52027 1.21475 0.82860 0.98885 0.92367 0.91504 1.22513 0.96466 0.98906 0.98345 1.22088 0.97245 0.95933 0.97581 1.19543 0.90772 0.95052 0.92598 0.98231 1.21510 0.92897 1.05622 1.36554 0.92152 1.25804 0.96618 1.00412 0.96066 1.70107 1.00526 1.39251 1.46212 0.85545 0.78324 0.79910 0.78098 1.18653 1.21047 1.20819 1.22562 0.98138 0.97940 0.95809 0.90588 0.91079 0.91842 0.84788 0.89812 0.74945 0.93314 0.91916 0.94029 0.94512 0.93190 0.92151 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 10.19 71.98 0.73 -0.75 16 2 C -0.13 -2.46 5.92 -10.77 -0.06 -2.52 16 3 H 0.09 2.21 7.67 -2.38 -0.02 2.19 16 4 C -0.14 -2.38 9.88 30.62 0.30 -2.08 16 5 C -0.19 -3.97 5.91 -11.54 -0.07 -4.04 16 6 H 0.15 2.18 8.14 -2.39 -0.02 2.16 16 7 C 0.53 16.05 7.61 87.66 0.67 16.72 16 8 O -0.59 -23.18 15.91 -3.02 -0.05 -23.23 16 9 N -0.70 -20.58 4.99 -439.10 -2.19 -22.77 16 10 C 0.15 5.45 3.24 45.72 0.15 5.59 16 11 H 0.07 2.65 7.57 -2.39 -0.02 2.63 16 12 C -0.12 -4.92 6.59 31.32 0.21 -4.71 16 13 C -0.09 -4.25 5.67 31.67 0.18 -4.07 16 14 C 0.04 1.95 2.76 -10.25 -0.03 1.92 16 15 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 16 C -0.53 -28.40 8.52 25.60 0.22 -28.18 16 17 H 0.06 3.12 7.78 -2.92 -0.02 3.10 16 18 C 0.01 0.53 5.35 84.66 0.45 0.98 16 19 N -0.92 -53.79 12.22 21.45 0.26 -53.53 16 20 Si 0.96 43.05 29.54 68.60 2.03 45.08 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 C -0.11 -4.15 5.94 31.67 0.19 -3.96 16 25 H 0.08 0.70 7.90 -2.39 -0.02 0.68 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.13 1.49 8.05 -2.38 -0.02 1.47 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.41 9.59 8.36 -92.71 -0.78 8.81 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 2.31 7.92 -2.39 -0.02 2.29 16 33 H 0.04 1.97 8.05 -2.39 -0.02 1.95 16 34 H 0.04 1.93 7.51 -2.39 -0.02 1.91 16 35 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.08 2.73 7.64 -2.39 -0.02 2.72 16 Total: -1.00 -66.21 305.31 3.26 -62.96 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.27 Total: 16.58 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 2.94 Total: -25.09 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -1.93 Total: -76.30 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -66.21 3.26 -62.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597715394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.856 kcal (2) G-P(sol) polarization free energy of solvation -66.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds