Wall clock time and date at job start Mon Mar 30 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 115.55893 * 2 1 4 4 C 1.52999 * 117.49729 * 145.69222 * 2 1 3 5 5 C 1.52994 * 117.49649 * 214.31251 * 2 1 3 6 6 H 1.08998 * 117.49927 * 144.99656 * 5 2 1 7 7 C 1.50706 * 117.50214 * 0.02562 * 5 2 1 8 8 O 1.21279 * 119.99659 * 359.97438 * 7 5 2 9 9 N 1.34768 * 120.00164 * 179.97438 * 7 5 2 10 10 C 1.46506 * 120.00142 * 179.97438 * 9 7 5 11 11 H 1.09004 * 110.01447 * 325.70435 * 10 9 7 12 12 C 1.53876 * 110.03056 * 87.08918 * 10 9 7 13 13 C 1.54272 * 106.59542 * 119.28830 * 12 10 9 14 14 C 1.54886 * 104.19745 * 23.60955 * 13 12 10 15 15 H 1.09001 * 110.75751 * 80.37123 * 14 13 12 16 16 C 1.50697 * 110.75892 * 203.74324 * 14 13 12 17 17 H 1.07999 * 119.99999 * 118.54104 * 16 14 13 18 18 C 1.37875 * 120.00223 * 298.55081 * 16 14 13 19 19 N 1.31513 * 120.00496 * 180.02562 * 18 16 14 20 20 Si 1.86803 * 119.99560 * 359.97438 * 18 16 14 21 21 H 1.48498 * 109.47121 * 90.00462 * 20 18 16 22 22 H 1.48504 * 109.47137 * 210.00227 * 20 18 16 23 23 H 1.48497 * 109.47509 * 330.00303 * 20 18 16 24 24 C 1.54259 * 110.03291 * 204.30747 * 10 9 7 25 25 H 1.08994 * 109.47257 * 205.68914 * 1 2 3 26 26 H 1.09000 * 109.46674 * 325.68904 * 1 2 3 27 27 H 1.09002 * 109.46866 * 85.68696 * 1 2 3 28 28 H 1.08997 * 117.49689 * 359.97438 * 4 2 1 29 29 H 1.08998 * 117.49909 * 214.97837 * 4 2 1 30 30 H 0.97002 * 120.00385 * 0.02562 * 9 7 5 31 31 H 1.08994 * 110.03177 * 238.56948 * 12 10 9 32 32 H 1.09004 * 110.03302 * 0.02562 * 12 10 9 33 33 H 1.08997 * 110.48513 * 142.28764 * 13 12 10 34 34 H 1.09006 * 110.48367 * 264.80008 * 13 12 10 35 35 H 0.97001 * 120.00192 * 179.97438 * 19 18 16 36 36 H 1.09000 * 110.49275 * 335.78884 * 24 10 9 37 37 H 1.09004 * 110.48351 * 98.43011 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2365 -1.1209 -0.7650 6 1 3.1713 -0.8750 -1.2686 7 6 1.3720 -2.1403 -1.4614 8 8 0.1638 -2.0529 -1.4017 9 7 1.9415 -3.1488 -2.1504 10 6 1.1012 -4.1401 -2.8269 11 1 0.1943 -4.3173 -2.2487 12 6 0.7382 -3.6477 -4.2388 13 6 1.3097 -4.6848 -5.2276 14 6 1.4252 -5.9834 -4.3915 15 1 0.4589 -6.4821 -4.3169 16 6 2.4606 -6.9071 -4.9796 17 1 3.3291 -7.1834 -4.4003 18 6 2.2992 -7.3992 -6.2574 19 7 3.2024 -8.2056 -6.7705 20 14 0.7966 -6.9215 -7.2592 21 1 1.0910 -5.6914 -8.0373 22 1 0.4512 -8.0254 -8.1905 23 1 -0.3469 -6.6679 -6.3464 24 6 1.8802 -5.4594 -3.0058 25 1 -0.3633 -0.9260 0.4455 26 1 -0.3633 0.8489 0.5793 27 1 -0.3633 0.0773 -1.0248 28 1 1.6112 -1.8583 1.2685 29 1 3.1716 -0.8753 1.2682 30 1 2.9078 -3.2190 -2.1978 31 1 -0.3448 -3.5869 -4.3461 32 1 1.1876 -2.6715 -4.4209 33 1 0.6273 -4.8298 -6.0651 34 1 2.2902 -4.3706 -5.5856 35 1 3.0886 -8.5521 -7.6694 36 1 2.9539 -5.2720 -3.0027 37 1 1.6136 -6.1690 -2.2225 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597715397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:30 Heat of formation + Delta-G solvation = -26.865929 kcal Electronic energy + Delta-G solvation = -16945.362111 eV Core-core repulsion = 14301.713248 eV Total energy + Delta-G solvation = -2643.648863 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.10361 -37.87978 -36.23802 -33.72092 -32.10182 -28.90574 -28.42968 -27.61221 -24.43117 -23.21050 -21.25446 -20.14852 -19.70976 -19.07665 -17.10098 -16.85191 -15.63661 -15.50083 -14.96513 -14.40309 -14.05409 -13.66158 -13.09296 -12.83187 -12.63756 -12.53196 -12.39680 -12.31450 -11.64940 -11.58313 -11.11260 -10.97086 -10.47751 -10.36602 -10.19534 -10.11927 -9.97268 -9.78335 -9.47050 -9.33834 -9.03555 -8.70027 -8.54397 -6.08688 -4.07935 2.62106 3.29150 3.34217 3.38875 3.40798 3.72553 4.41743 4.51385 4.71757 4.73542 5.06042 5.20655 5.23528 5.34363 5.44699 5.54471 5.58345 5.68626 5.78480 5.90591 6.03551 6.11307 6.14382 6.29915 6.40678 6.46593 6.48657 6.57452 6.69605 6.83400 7.02255 7.08128 7.50474 7.73768 7.78279 8.44471 8.50744 8.94302 9.54511 11.04525 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.055275 B = 0.005129 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.434701 B = 5457.905129 C = 5739.591975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.121 4.121 3 H 0.108 0.892 4 C -0.152 4.152 5 C -0.193 4.193 6 H 0.121 0.879 7 C 0.538 3.462 8 O -0.542 6.542 9 N -0.715 5.715 10 C 0.138 3.862 11 H 0.082 0.918 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.015 3.985 15 H 0.034 0.966 16 C -0.511 4.511 17 H 0.074 0.926 18 C 0.071 3.929 19 N -0.902 5.902 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.295 1.295 23 H -0.265 1.265 24 C -0.110 4.110 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.399 0.601 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.263 0.737 36 H 0.068 0.932 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 14.434 11.695 18.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 H 0.126 0.874 4 C -0.190 4.190 5 C -0.214 4.214 6 H 0.139 0.861 7 C 0.324 3.676 8 O -0.419 6.419 9 N -0.365 5.365 10 C 0.034 3.966 11 H 0.100 0.900 12 C -0.169 4.169 13 C -0.168 4.168 14 C -0.004 4.004 15 H 0.052 0.948 16 C -0.549 4.549 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.541 5.541 20 Si 0.711 3.289 21 H -0.205 1.205 22 H -0.223 1.223 23 H -0.190 1.190 24 C -0.148 4.148 25 H 0.083 0.917 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.120 0.880 30 H 0.234 0.766 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.573 14.368 11.568 18.625 hybrid contribution -0.067 0.167 -0.874 0.893 sum -2.640 14.534 10.694 18.237 Atomic orbital electron populations 1.21353 0.91524 1.01264 1.02622 1.22347 0.96603 0.93432 1.01567 0.87374 1.23059 1.02945 1.01917 0.91064 1.22330 1.02122 1.01271 0.95712 0.86120 1.19644 0.88134 0.81416 0.78397 1.90678 1.14549 1.74713 1.62010 1.46290 1.10466 1.27379 1.52388 1.21833 0.94186 0.87991 0.92616 0.89961 1.22551 1.00383 0.98981 0.94964 1.22822 0.99942 0.96779 0.97293 1.20071 0.97327 0.92493 0.90528 0.94755 1.20971 1.07141 1.26951 0.99801 0.90830 1.24984 0.95918 0.94464 0.97646 1.69900 1.34859 1.32950 1.16365 0.86901 0.84274 0.77511 0.80170 1.20462 1.22255 1.18962 1.22588 0.99411 0.93313 0.99498 0.91730 0.93540 0.91346 0.88283 0.88010 0.76643 0.92304 0.92507 0.93588 0.91485 0.92677 0.91364 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 8.43 37.16 0.31 -0.96 16 2 C -0.12 -1.20 6.41 -90.62 -0.58 -1.79 16 3 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 4 C -0.15 -1.41 9.88 -26.73 -0.26 -1.67 16 5 C -0.19 -2.08 6.19 -91.77 -0.57 -2.65 16 6 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 7 C 0.54 7.76 7.59 -10.99 -0.08 7.68 16 8 O -0.54 -9.45 12.77 5.56 0.07 -9.38 16 9 N -0.72 -10.21 4.99 -52.72 -0.26 -10.48 16 10 C 0.14 2.34 3.23 -66.81 -0.22 2.12 16 11 H 0.08 1.47 7.59 -51.93 -0.39 1.07 16 12 C -0.13 -2.35 6.59 -25.61 -0.17 -2.51 16 13 C -0.13 -2.75 5.07 -25.07 -0.13 -2.88 16 14 C 0.02 0.34 2.29 -89.74 -0.21 0.14 16 15 H 0.03 0.81 7.38 -51.93 -0.38 0.42 16 16 C -0.51 -13.96 9.13 -34.44 -0.31 -14.27 16 17 H 0.07 2.16 8.03 -52.49 -0.42 1.74 16 18 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 19 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 20 Si 0.88 21.76 24.46 -169.99 -4.16 17.60 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 23 H -0.26 -6.28 6.48 56.52 0.37 -5.92 16 24 C -0.11 -2.06 5.95 -25.03 -0.15 -2.21 16 25 H 0.06 0.84 7.02 -51.93 -0.36 0.47 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.91 7.26 -51.93 -0.38 0.53 16 28 H 0.10 1.00 8.05 -51.93 -0.42 0.58 16 29 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.40 4.84 8.35 -40.82 -0.34 4.50 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.97 7.92 -51.93 -0.41 0.56 16 33 H 0.05 1.00 4.91 -51.93 -0.25 0.74 16 34 H 0.07 1.44 8.04 -51.93 -0.42 1.03 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 1.25 7.63 -51.93 -0.40 0.85 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 292.41 15.07 4.41 4.41 Total: -1.00 -30.75 292.41 -7.52 -38.27 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -5.88 Total: 3.20 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.46 Total: -17.06 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.51 Total: -37.03 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.16 Total: 17.60 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.75 -7.52 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597715397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.402 kcal (2) G-P(sol) polarization free energy of solvation -30.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds