Wall clock time and date at job start Mon Mar 30 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 115.55893 * 2 1 4 4 C 1.52999 * 117.49729 * 145.69222 * 2 1 3 5 5 C 1.52994 * 117.49649 * 214.31251 * 2 1 3 6 6 H 1.08998 * 117.49927 * 144.99656 * 5 2 1 7 7 C 1.50706 * 117.50214 * 0.02562 * 5 2 1 8 8 O 1.21279 * 119.99659 * 359.97438 * 7 5 2 9 9 N 1.34768 * 120.00164 * 179.97438 * 7 5 2 10 10 C 1.46506 * 120.00142 * 179.97438 * 9 7 5 11 11 H 1.09004 * 110.01447 * 325.70435 * 10 9 7 12 12 C 1.53876 * 110.03056 * 87.08918 * 10 9 7 13 13 C 1.54272 * 106.59542 * 119.28830 * 12 10 9 14 14 C 1.54886 * 104.19745 * 23.60955 * 13 12 10 15 15 H 1.09001 * 110.75751 * 80.37123 * 14 13 12 16 16 C 1.50697 * 110.75892 * 203.74324 * 14 13 12 17 17 H 1.07999 * 119.99999 * 118.54104 * 16 14 13 18 18 C 1.37875 * 120.00223 * 298.55081 * 16 14 13 19 19 N 1.31513 * 120.00496 * 180.02562 * 18 16 14 20 20 Si 1.86803 * 119.99560 * 359.97438 * 18 16 14 21 21 H 1.48498 * 109.47121 * 90.00462 * 20 18 16 22 22 H 1.48504 * 109.47137 * 210.00227 * 20 18 16 23 23 H 1.48497 * 109.47509 * 330.00303 * 20 18 16 24 24 C 1.54259 * 110.03291 * 204.30747 * 10 9 7 25 25 H 1.08994 * 109.47257 * 205.68914 * 1 2 3 26 26 H 1.09000 * 109.46674 * 325.68904 * 1 2 3 27 27 H 1.09002 * 109.46866 * 85.68696 * 1 2 3 28 28 H 1.08997 * 117.49689 * 359.97438 * 4 2 1 29 29 H 1.08998 * 117.49909 * 214.97837 * 4 2 1 30 30 H 0.97002 * 120.00385 * 0.02562 * 9 7 5 31 31 H 1.08994 * 110.03177 * 238.56948 * 12 10 9 32 32 H 1.09004 * 110.03302 * 0.02562 * 12 10 9 33 33 H 1.08997 * 110.48513 * 142.28764 * 13 12 10 34 34 H 1.09006 * 110.48367 * 264.80008 * 13 12 10 35 35 H 0.97001 * 120.00192 * 179.97438 * 19 18 16 36 36 H 1.09000 * 110.49275 * 335.78884 * 24 10 9 37 37 H 1.09004 * 110.48351 * 98.43011 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2365 -1.1209 -0.7650 6 1 3.1713 -0.8750 -1.2686 7 6 1.3720 -2.1403 -1.4614 8 8 0.1638 -2.0529 -1.4017 9 7 1.9415 -3.1488 -2.1504 10 6 1.1012 -4.1401 -2.8269 11 1 0.1943 -4.3173 -2.2487 12 6 0.7382 -3.6477 -4.2388 13 6 1.3097 -4.6848 -5.2276 14 6 1.4252 -5.9834 -4.3915 15 1 0.4589 -6.4821 -4.3169 16 6 2.4606 -6.9071 -4.9796 17 1 3.3291 -7.1834 -4.4003 18 6 2.2992 -7.3992 -6.2574 19 7 3.2024 -8.2056 -6.7705 20 14 0.7966 -6.9215 -7.2592 21 1 1.0910 -5.6914 -8.0373 22 1 0.4512 -8.0254 -8.1905 23 1 -0.3469 -6.6679 -6.3464 24 6 1.8802 -5.4594 -3.0058 25 1 -0.3633 -0.9260 0.4455 26 1 -0.3633 0.8489 0.5793 27 1 -0.3633 0.0773 -1.0248 28 1 1.6112 -1.8583 1.2685 29 1 3.1716 -0.8753 1.2682 30 1 2.9078 -3.2190 -2.1978 31 1 -0.3448 -3.5869 -4.3461 32 1 1.1876 -2.6715 -4.4209 33 1 0.6273 -4.8298 -6.0651 34 1 2.2902 -4.3706 -5.5856 35 1 3.0886 -8.5521 -7.6694 36 1 2.9539 -5.2720 -3.0027 37 1 1.6136 -6.1690 -2.2225 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597715397.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:30 Heat of formation + Delta-G solvation = -46.597376 kcal Electronic energy + Delta-G solvation = -16946.217731 eV Core-core repulsion = 14301.713248 eV Total energy + Delta-G solvation = -2644.504483 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.21946 -39.24787 -37.31338 -35.26694 -34.01028 -30.38138 -29.76340 -28.95346 -25.93169 -24.61183 -22.11147 -21.52798 -21.14584 -20.50760 -18.84156 -18.06775 -16.98317 -16.93944 -16.28951 -15.91109 -15.36859 -14.94200 -14.74447 -14.18921 -14.11656 -14.00327 -13.55239 -13.37134 -13.06840 -12.85563 -12.61747 -12.36159 -12.28006 -11.82186 -11.64793 -11.54729 -11.27372 -11.15139 -11.05588 -10.99942 -10.70125 -10.46855 -9.96526 -8.28813 -6.31551 1.32726 1.36854 1.46478 1.57561 2.24601 2.34283 2.90095 3.07186 3.66692 3.77857 3.85450 3.92800 3.98532 4.08199 4.25931 4.50889 4.59493 4.64587 4.70695 4.84588 4.88292 4.92173 4.93870 4.96189 5.00053 5.08118 5.09962 5.19675 5.25331 5.38833 5.55916 5.62406 5.68678 5.77716 6.32200 6.66306 6.74996 7.34061 7.34864 8.87842 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.055275 B = 0.005129 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.434701 B = 5457.905129 C = 5739.591975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.123 4.123 3 H 0.135 0.865 4 C -0.139 4.139 5 C -0.201 4.201 6 H 0.147 0.853 7 C 0.533 3.467 8 O -0.576 6.576 9 N -0.710 5.710 10 C 0.149 3.851 11 H 0.076 0.924 12 C -0.121 4.121 13 C -0.127 4.127 14 C 0.006 3.994 15 H 0.030 0.970 16 C -0.511 4.511 17 H 0.039 0.961 18 C 0.016 3.984 19 N -0.950 5.950 20 Si 0.940 3.060 21 H -0.267 1.267 22 H -0.297 1.297 23 H -0.249 1.249 24 C -0.101 4.101 25 H 0.042 0.958 26 H 0.065 0.935 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.131 0.869 30 H 0.411 0.589 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.265 0.735 36 H 0.070 0.930 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 16.679 12.679 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.141 4.141 3 H 0.153 0.847 4 C -0.176 4.176 5 C -0.222 4.222 6 H 0.164 0.836 7 C 0.321 3.679 8 O -0.456 6.456 9 N -0.361 5.361 10 C 0.044 3.956 11 H 0.094 0.906 12 C -0.160 4.160 13 C -0.164 4.164 14 C -0.013 4.013 15 H 0.048 0.952 16 C -0.549 4.549 17 H 0.057 0.943 18 C -0.181 4.181 19 N -0.591 5.591 20 Si 0.766 3.234 21 H -0.193 1.193 22 H -0.225 1.225 23 H -0.173 1.173 24 C -0.139 4.139 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.150 0.850 30 H 0.248 0.752 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.764 16.632 12.576 21.033 hybrid contribution 0.037 -0.568 -1.106 1.244 sum -2.727 16.064 11.469 19.925 Atomic orbital electron populations 1.21279 0.93114 1.00956 1.01234 1.22488 0.95491 0.94720 1.01428 0.84673 1.23155 1.03772 1.00840 0.89828 1.22374 1.02547 1.00652 0.96622 0.83577 1.20315 0.88151 0.81597 0.77841 1.90674 1.16286 1.75533 1.63097 1.46166 1.10871 1.26896 1.52155 1.21481 0.94002 0.87721 0.92349 0.90589 1.22471 1.00550 0.98507 0.94459 1.22681 0.99667 0.96565 0.97534 1.20050 0.95639 0.92540 0.93074 0.95221 1.21277 1.06955 1.27179 0.99465 0.94259 1.25785 0.98763 0.94562 0.99011 1.70038 1.37185 1.34879 1.16997 0.85963 0.81190 0.77402 0.78834 1.19258 1.22464 1.17317 1.22441 0.99757 0.94378 0.97316 0.93910 0.91597 0.93634 0.89582 0.85042 0.75217 0.91892 0.91301 0.94050 0.92283 0.92628 0.91117 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 8.43 71.99 0.61 -1.74 16 2 C -0.12 -2.08 6.41 -10.79 -0.07 -2.14 16 3 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.14 -2.11 9.88 30.59 0.30 -1.81 16 5 C -0.20 -3.72 6.19 -11.54 -0.07 -3.79 16 6 H 0.15 1.97 8.14 -2.39 -0.02 1.95 16 7 C 0.53 14.36 7.59 87.66 0.67 15.02 16 8 O -0.58 -19.56 12.77 -3.03 -0.04 -19.60 16 9 N -0.71 -18.79 4.99 -439.10 -2.19 -20.98 16 10 C 0.15 4.83 3.23 45.71 0.15 4.98 16 11 H 0.08 2.60 7.59 -2.38 -0.02 2.59 16 12 C -0.12 -4.12 6.59 31.32 0.21 -3.91 16 13 C -0.13 -5.14 5.07 31.67 0.16 -4.98 16 14 C 0.01 0.28 2.29 -10.22 -0.02 0.25 16 15 H 0.03 1.37 7.38 -2.39 -0.02 1.35 16 16 C -0.51 -28.33 9.13 25.60 0.23 -28.10 16 17 H 0.04 2.38 8.03 -2.91 -0.02 2.36 16 18 C 0.02 0.91 5.46 84.65 0.46 1.37 16 19 N -0.95 -58.90 13.96 21.45 0.30 -58.60 16 20 Si 0.94 44.70 24.46 68.60 1.68 46.38 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 23 H -0.25 -11.12 6.48 99.48 0.65 -10.47 16 24 C -0.10 -3.67 5.95 31.69 0.19 -3.48 16 25 H 0.04 1.09 7.02 -2.39 -0.02 1.07 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 1.18 7.26 -2.39 -0.02 1.16 16 28 H 0.09 1.56 8.05 -2.39 -0.02 1.54 16 29 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.41 8.94 8.35 -92.71 -0.77 8.17 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.07 2.18 7.92 -2.38 -0.02 2.17 16 33 H 0.04 1.71 4.91 -2.39 -0.01 1.70 16 34 H 0.06 2.47 8.04 -2.38 -0.02 2.45 16 35 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.07 2.52 7.63 -2.39 -0.02 2.51 16 37 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -67.35 292.41 2.78 -64.57 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.22 Total: 16.57 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 2.81 Total: -28.33 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -1.89 Total: -79.59 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.04 Total: -19.60 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.68 Total: 46.38 kcal Total: -67.35 2.78 -64.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597715397.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.975 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds