Wall clock time and date at job start Mon Mar 30 2020 03:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47277 * 2 1 4 4 C 1.50702 * 109.47126 * 240.00074 * 2 1 3 5 5 H 1.07997 * 120.00247 * 275.10805 * 4 2 1 6 6 C 1.37882 * 120.00123 * 95.10608 * 4 2 1 7 7 N 1.31514 * 120.00191 * 184.91344 * 6 4 2 8 8 Si 1.86806 * 119.99481 * 4.90887 * 6 4 2 9 9 H 1.48508 * 109.46760 * 84.82607 * 8 6 4 10 10 H 1.48500 * 109.46871 * 204.81788 * 8 6 4 11 11 H 1.48488 * 109.47429 * 324.82410 * 8 6 4 12 12 C 1.50699 * 109.47084 * 120.00370 * 2 1 3 13 13 O 1.21284 * 120.00041 * 119.99806 * 12 2 1 14 14 N 1.34773 * 120.00052 * 299.99982 * 12 2 1 15 15 C 1.46504 * 119.99880 * 179.97438 * 14 12 2 16 16 C 1.53003 * 115.54690 * 179.90932 * 15 14 12 17 17 C 1.53004 * 115.54908 * 180.02562 * 16 15 14 18 18 C 1.52997 * 117.49852 * 34.33143 * 16 15 14 19 19 C 1.53003 * 117.49940 * 325.67039 * 16 15 14 20 20 C 1.53004 * 117.49907 * 34.20640 * 15 14 12 21 21 C 1.52990 * 117.50153 * 325.58151 * 15 14 12 22 22 H 1.09002 * 109.47218 * 295.07200 * 1 2 3 23 23 H 1.09005 * 109.47139 * 55.06751 * 1 2 3 24 24 H 1.08998 * 109.47637 * 175.06803 * 1 2 3 25 25 H 0.97003 * 119.99471 * 179.97438 * 7 6 4 26 26 H 0.96999 * 119.99812 * 359.97438 * 14 12 2 27 27 H 1.08998 * 109.46984 * 59.99833 * 17 16 15 28 28 H 1.08997 * 109.46745 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.46970 * 300.00146 * 17 16 15 30 30 H 1.08997 * 117.50016 * 359.97438 * 18 16 15 31 31 H 1.09000 * 117.49728 * 145.01880 * 18 16 15 32 32 H 1.08997 * 117.49665 * 214.97420 * 19 16 15 33 33 H 1.09000 * 117.49984 * 0.02562 * 19 16 15 34 34 H 1.08993 * 117.49815 * 359.97438 * 20 15 14 35 35 H 1.08996 * 117.49672 * 145.01762 * 20 15 14 36 36 H 1.09000 * 117.50370 * 214.98232 * 21 15 14 37 37 H 1.08998 * 117.49763 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1338 -1.7856 -1.2297 6 6 2.3623 0.0123 -2.3574 7 7 2.7080 -0.6127 -3.4616 8 14 2.3181 1.8794 -2.3156 9 1 3.6039 2.3930 -1.7786 10 1 2.1127 2.4005 -3.6908 11 1 1.2030 2.3288 -1.4441 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1191 14 7 1.7067 -0.2501 2.4545 15 6 2.1946 -0.9412 3.6506 16 6 1.7656 -0.3308 4.9864 17 6 2.2756 -1.0521 6.2357 18 6 0.3780 0.3099 5.0572 19 6 1.6294 1.1916 5.0562 20 6 3.5819 -1.5825 3.5795 21 6 2.3309 -2.4634 3.5809 22 1 -0.3634 0.4355 0.9308 23 1 -0.3634 0.5885 -0.8425 24 1 -0.3634 -1.0238 -0.0883 25 1 2.9398 -0.1042 -4.2545 26 1 1.1493 0.5388 2.5435 27 1 3.3656 -1.0535 6.2348 28 1 1.9133 -0.5376 7.1256 29 1 1.9110 -2.0793 6.2364 30 1 -0.2291 0.2969 4.1521 31 1 -0.1717 0.2176 5.9939 32 1 1.9022 1.6789 5.9922 33 1 1.8449 1.7582 4.1504 34 1 4.1313 -1.4907 2.6427 35 1 4.1893 -1.5696 4.4845 36 1 2.1153 -3.0301 4.4867 37 1 2.0580 -2.9507 2.6449 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597730798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:55 Heat of formation + Delta-G solvation = 11.948732 kcal Electronic energy + Delta-G solvation = -17471.615547 eV Core-core repulsion = 14829.649815 eV Total energy + Delta-G solvation = -2641.965733 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.14893 -37.89628 -35.06291 -33.60959 -32.48425 -30.91171 -28.35073 -25.25889 -23.91238 -22.68515 -22.03752 -21.81619 -19.20950 -18.54065 -17.04899 -16.81524 -15.29272 -14.94811 -14.53806 -14.07751 -13.88692 -13.41075 -13.39497 -13.12599 -12.52974 -12.32619 -12.25387 -11.77668 -11.70033 -11.47506 -11.21741 -11.11065 -10.76655 -10.73678 -10.65924 -10.23665 -9.87640 -9.81647 -9.65790 -9.16847 -8.61056 -8.44720 -8.01401 -6.06607 -4.05731 3.23916 3.30499 3.33259 3.42841 3.66257 3.68944 4.38240 4.45521 4.47594 4.63585 4.89966 4.93082 5.19037 5.31908 5.43227 5.55343 5.56683 5.67726 5.75045 5.82014 5.92386 6.03574 6.04667 6.08772 6.12338 6.14601 6.38098 6.50259 6.53053 6.76623 6.82749 7.15171 7.18001 7.55990 8.18098 8.54927 9.09099 9.17675 9.53157 11.06648 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.035267 B = 0.007010 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.755922 B = 3993.478667 C = 4346.594694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.004 4.004 3 H 0.053 0.947 4 C -0.493 4.493 5 H 0.086 0.914 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.871 3.129 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.265 1.265 12 C 0.520 3.480 13 O -0.522 6.522 14 N -0.715 5.715 15 C 0.133 3.867 16 C -0.089 4.089 17 C -0.111 4.111 18 C -0.174 4.174 19 C -0.175 4.175 20 C -0.176 4.176 21 C -0.175 4.175 22 H 0.025 0.975 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.264 0.736 26 H 0.395 0.605 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.794 3.820 18.169 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.026 4.026 3 H 0.071 0.929 4 C -0.531 4.531 5 H 0.104 0.896 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.698 3.302 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.190 1.190 12 C 0.309 3.691 13 O -0.396 6.396 14 N -0.367 5.367 15 C 0.045 3.955 16 C -0.090 4.090 17 C -0.169 4.169 18 C -0.211 4.211 19 C -0.212 4.212 20 C -0.215 4.215 21 C -0.213 4.213 22 H 0.044 0.956 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.230 0.770 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.225 3.124 17.829 18.386 hybrid contribution -0.229 1.473 -0.096 1.494 sum -3.454 4.597 17.733 18.642 Atomic orbital electron populations 1.21953 0.96842 1.01392 0.98965 1.19352 0.94016 0.96924 0.92304 0.92916 1.20730 1.42938 0.96164 0.93317 0.89583 1.25026 0.94679 0.97945 0.95363 1.69884 1.46038 1.35649 1.01659 0.86971 0.78965 0.86824 0.77452 1.20144 1.21239 1.18993 1.21762 0.79071 0.84678 0.83622 1.90535 1.36634 1.26010 1.86380 1.45730 1.54729 1.31905 1.04361 1.19739 0.99267 0.92188 0.84352 1.20821 1.00098 0.94476 0.93557 1.21309 1.01327 1.00174 0.94056 1.23091 0.90653 1.03993 1.03366 1.23094 1.02070 0.92665 1.03363 1.23407 0.91084 1.03463 1.03498 1.23386 1.02038 0.92520 1.03403 0.95647 0.92701 0.92869 0.92555 0.77047 0.91737 0.92205 0.91737 0.88540 0.88597 0.88591 0.88583 0.86966 0.89523 0.89525 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.12 37.15 0.34 -2.34 16 2 C 0.00 -0.10 2.30 -92.93 -0.21 -0.31 16 3 H 0.05 1.20 5.29 -51.93 -0.27 0.93 16 4 C -0.49 -14.16 8.36 -34.44 -0.29 -14.44 16 5 H 0.09 2.80 7.61 -52.49 -0.40 2.40 16 6 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 7 N -0.89 -27.62 13.96 55.43 0.77 -26.84 16 8 Si 0.87 21.03 26.99 -169.99 -4.59 16.44 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -5.90 6.82 56.52 0.39 -5.52 16 12 C 0.52 11.44 6.85 -10.99 -0.08 11.36 16 13 O -0.52 -13.14 11.25 5.55 0.06 -13.08 16 14 N -0.71 -12.28 5.13 -47.61 -0.24 -12.53 16 15 C 0.13 2.04 3.07 -131.82 -0.40 1.63 16 16 C -0.09 -1.04 2.51 -154.50 -0.39 -1.43 16 17 C -0.11 -1.07 8.74 37.16 0.32 -0.74 16 18 C -0.17 -1.80 9.55 -26.69 -0.26 -2.05 16 19 C -0.17 -1.83 9.55 -26.69 -0.26 -2.08 16 20 C -0.18 -2.87 9.11 -26.73 -0.24 -3.12 16 21 C -0.18 -2.83 9.11 -26.74 -0.24 -3.07 16 22 H 0.02 0.41 7.43 -51.93 -0.39 0.02 16 23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 26 H 0.39 5.85 5.96 -40.82 -0.24 5.60 16 27 H 0.06 0.61 6.90 -51.93 -0.36 0.25 16 28 H 0.06 0.48 8.11 -51.93 -0.42 0.05 16 29 H 0.06 0.61 6.90 -51.93 -0.36 0.25 16 30 H 0.10 1.05 7.36 -51.93 -0.38 0.67 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.07 7.36 -51.93 -0.38 0.69 16 34 H 0.11 2.23 6.36 -51.93 -0.33 1.90 16 35 H 0.09 1.18 6.75 -51.93 -0.35 0.82 16 36 H 0.09 1.16 6.75 -51.93 -0.35 0.81 16 37 H 0.11 2.18 6.38 -51.93 -0.33 1.84 16 LS Contribution 292.16 15.07 4.40 4.40 Total: -1.00 -31.93 292.16 -6.80 -38.74 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -5.41 Total: 7.49 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -1.80 Total: -14.62 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.53 Total: -39.37 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: 0.06 Total: -13.08 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.59 Total: 16.44 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.93 -6.80 -38.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597730798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.686 kcal (2) G-P(sol) polarization free energy of solvation -31.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds