Wall clock time and date at job start Mon Mar 30 2020 03:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47277 * 2 1 4 4 C 1.50702 * 109.47126 * 240.00074 * 2 1 3 5 5 H 1.07997 * 120.00247 * 275.10805 * 4 2 1 6 6 C 1.37882 * 120.00123 * 95.10608 * 4 2 1 7 7 N 1.31514 * 120.00191 * 184.91344 * 6 4 2 8 8 Si 1.86806 * 119.99481 * 4.90887 * 6 4 2 9 9 H 1.48508 * 109.46760 * 84.82607 * 8 6 4 10 10 H 1.48500 * 109.46871 * 204.81788 * 8 6 4 11 11 H 1.48488 * 109.47429 * 324.82410 * 8 6 4 12 12 C 1.50699 * 109.47084 * 120.00370 * 2 1 3 13 13 O 1.21284 * 120.00041 * 119.99806 * 12 2 1 14 14 N 1.34773 * 120.00052 * 299.99982 * 12 2 1 15 15 C 1.46504 * 119.99880 * 179.97438 * 14 12 2 16 16 C 1.53003 * 115.54690 * 179.90932 * 15 14 12 17 17 C 1.53004 * 115.54908 * 180.02562 * 16 15 14 18 18 C 1.52997 * 117.49852 * 34.33143 * 16 15 14 19 19 C 1.53003 * 117.49940 * 325.67039 * 16 15 14 20 20 C 1.53004 * 117.49907 * 34.20640 * 15 14 12 21 21 C 1.52990 * 117.50153 * 325.58151 * 15 14 12 22 22 H 1.09002 * 109.47218 * 295.07200 * 1 2 3 23 23 H 1.09005 * 109.47139 * 55.06751 * 1 2 3 24 24 H 1.08998 * 109.47637 * 175.06803 * 1 2 3 25 25 H 0.97003 * 119.99471 * 179.97438 * 7 6 4 26 26 H 0.96999 * 119.99812 * 359.97438 * 14 12 2 27 27 H 1.08998 * 109.46984 * 59.99833 * 17 16 15 28 28 H 1.08997 * 109.46745 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.46970 * 300.00146 * 17 16 15 30 30 H 1.08997 * 117.50016 * 359.97438 * 18 16 15 31 31 H 1.09000 * 117.49728 * 145.01880 * 18 16 15 32 32 H 1.08997 * 117.49665 * 214.97420 * 19 16 15 33 33 H 1.09000 * 117.49984 * 0.02562 * 19 16 15 34 34 H 1.08993 * 117.49815 * 359.97438 * 20 15 14 35 35 H 1.08996 * 117.49672 * 145.01762 * 20 15 14 36 36 H 1.09000 * 117.50370 * 214.98232 * 21 15 14 37 37 H 1.08998 * 117.49763 * 0.02562 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1338 -1.7856 -1.2297 6 6 2.3623 0.0123 -2.3574 7 7 2.7080 -0.6127 -3.4616 8 14 2.3181 1.8794 -2.3156 9 1 3.6039 2.3930 -1.7786 10 1 2.1127 2.4005 -3.6908 11 1 1.2030 2.3288 -1.4441 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1191 14 7 1.7067 -0.2501 2.4545 15 6 2.1946 -0.9412 3.6506 16 6 1.7656 -0.3308 4.9864 17 6 2.2756 -1.0521 6.2357 18 6 0.3780 0.3099 5.0572 19 6 1.6294 1.1916 5.0562 20 6 3.5819 -1.5825 3.5795 21 6 2.3309 -2.4634 3.5809 22 1 -0.3634 0.4355 0.9308 23 1 -0.3634 0.5885 -0.8425 24 1 -0.3634 -1.0238 -0.0883 25 1 2.9398 -0.1042 -4.2545 26 1 1.1493 0.5388 2.5435 27 1 3.3656 -1.0535 6.2348 28 1 1.9133 -0.5376 7.1256 29 1 1.9110 -2.0793 6.2364 30 1 -0.2291 0.2969 4.1521 31 1 -0.1717 0.2176 5.9939 32 1 1.9022 1.6789 5.9922 33 1 1.8449 1.7582 4.1504 34 1 4.1313 -1.4907 2.6427 35 1 4.1893 -1.5696 4.4845 36 1 2.1153 -3.0301 4.4867 37 1 2.0580 -2.9507 2.6449 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597730798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:55 Heat of formation + Delta-G solvation = -9.563515 kcal Electronic energy + Delta-G solvation = -17472.548388 eV Core-core repulsion = 14829.649815 eV Total energy + Delta-G solvation = -2642.898574 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.54704 -39.23942 -36.33088 -35.50785 -34.25181 -32.77091 -29.12754 -27.27013 -25.40408 -23.66981 -23.55497 -22.90433 -20.85196 -19.81503 -19.08908 -18.21879 -16.71574 -16.50281 -16.05572 -15.81043 -15.21806 -14.82013 -14.49511 -14.44616 -14.19635 -14.11407 -13.15431 -13.01278 -12.97424 -12.80141 -12.79034 -12.58476 -12.26258 -12.17436 -11.97431 -11.76692 -11.63694 -11.28080 -10.92536 -10.77067 -10.67005 -10.24573 -9.42877 -8.29147 -6.35602 1.33261 1.36462 1.46551 1.81080 2.21743 2.33342 2.63307 3.07051 3.31377 3.47730 3.71059 3.93220 4.02755 4.16644 4.26724 4.37062 4.38886 4.55332 4.69621 4.73353 4.79477 4.83339 4.93074 5.03165 5.06534 5.07051 5.11557 5.16695 5.29832 5.38800 5.40509 5.46999 5.55645 5.71964 6.23802 6.64160 6.83087 7.25879 7.51758 8.88829 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.035267 B = 0.007010 C = 0.006440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.755922 B = 3993.478667 C = 4346.594694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.008 4.008 3 H 0.069 0.931 4 C -0.505 4.505 5 H 0.022 0.978 6 C 0.006 3.994 7 N -0.951 5.951 8 Si 0.946 3.054 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.224 1.224 12 C 0.517 3.483 13 O -0.565 6.565 14 N -0.696 5.696 15 C 0.138 3.862 16 C -0.102 4.102 17 C -0.109 4.109 18 C -0.166 4.166 19 C -0.168 4.168 20 C -0.183 4.183 21 C -0.180 4.180 22 H 0.072 0.928 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.267 0.733 26 H 0.411 0.589 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 6.865 21.479 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.030 4.030 3 H 0.087 0.913 4 C -0.543 4.543 5 H 0.041 0.959 6 C -0.190 4.190 7 N -0.591 5.591 8 Si 0.768 3.232 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.147 1.147 12 C 0.305 3.695 13 O -0.443 6.443 14 N -0.348 5.348 15 C 0.050 3.950 16 C -0.103 4.103 17 C -0.166 4.166 18 C -0.202 4.202 19 C -0.205 4.205 20 C -0.221 4.221 21 C -0.218 4.218 22 H 0.091 0.909 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.076 0.924 26 H 0.248 0.752 27 H 0.082 0.918 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.717 6.190 21.195 22.578 hybrid contribution 0.248 0.391 -1.119 1.211 sum -4.469 6.581 20.076 21.595 Atomic orbital electron populations 1.21827 0.93904 1.01101 1.01632 1.19332 0.96204 0.96864 0.90583 0.91315 1.20850 1.43473 0.93757 0.96249 0.95937 1.26071 0.93982 1.04568 0.94419 1.70075 1.47878 1.38358 1.02774 0.85777 0.80469 0.78595 0.78402 1.19590 1.20939 1.14652 1.21497 0.78824 0.84185 0.84969 1.90547 1.38625 1.27923 1.87190 1.45411 1.53810 1.31947 1.03648 1.20084 0.98117 0.91573 0.85229 1.20862 1.01919 0.95693 0.91822 1.21338 1.01350 1.00261 0.93679 1.23196 0.90102 1.02703 1.04247 1.23195 1.01685 0.91469 1.04157 1.23316 0.91558 1.04493 1.02748 1.23297 1.02331 0.93457 1.02731 0.90903 0.92337 0.94428 0.92403 0.75181 0.91778 0.89873 0.91703 0.89206 0.86348 0.86389 0.89384 0.91294 0.86372 0.86330 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.84 9.12 71.98 0.66 -4.19 16 2 C -0.01 -0.37 2.30 -12.29 -0.03 -0.40 16 3 H 0.07 2.96 5.29 -2.39 -0.01 2.95 16 4 C -0.51 -30.34 8.36 25.60 0.21 -30.13 16 5 H 0.02 1.58 7.61 -2.91 -0.02 1.56 16 6 C 0.01 0.36 5.47 84.66 0.46 0.83 16 7 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 8 Si 0.95 42.92 26.99 68.60 1.85 44.77 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.22 -8.65 6.82 99.48 0.68 -7.97 16 12 C 0.52 23.09 6.85 87.66 0.60 23.69 16 13 O -0.57 -30.30 11.25 -3.04 -0.03 -30.33 16 14 N -0.70 -22.94 5.13 -422.92 -2.17 -25.11 16 15 C 0.14 4.02 3.07 3.60 0.01 4.03 16 16 C -0.10 -2.02 2.51 -52.18 -0.13 -2.15 16 17 C -0.11 -1.64 8.74 71.98 0.63 -1.02 16 18 C -0.17 -2.68 9.55 30.62 0.29 -2.38 16 19 C -0.17 -2.76 9.55 30.62 0.29 -2.47 16 20 C -0.18 -5.96 9.11 30.60 0.28 -5.68 16 21 C -0.18 -5.81 9.11 30.59 0.28 -5.54 16 22 H 0.07 2.08 7.43 -2.39 -0.02 2.06 16 23 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 26 H 0.41 10.86 5.96 -92.71 -0.55 10.30 16 27 H 0.06 0.97 6.90 -2.39 -0.02 0.95 16 28 H 0.08 0.90 8.11 -2.39 -0.02 0.88 16 29 H 0.06 0.97 6.90 -2.39 -0.02 0.95 16 30 H 0.09 1.58 7.36 -2.39 -0.02 1.57 16 31 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 1.60 7.36 -2.39 -0.02 1.58 16 34 H 0.07 2.89 6.36 -2.39 -0.02 2.87 16 35 H 0.12 3.03 6.75 -2.39 -0.02 3.01 16 36 H 0.12 3.00 6.75 -2.39 -0.02 2.98 16 37 H 0.07 2.85 6.38 -2.39 -0.02 2.83 16 Total: -1.00 -76.26 292.16 3.99 -72.26 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.49 Total: 24.97 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 3.56 Total: -25.41 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.87 Total: -86.27 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.03 Total: -30.33 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 1.85 Total: 44.77 kcal Total: -76.26 3.99 -72.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597730798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.701 kcal (2) G-P(sol) polarization free energy of solvation -76.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds