Wall clock time and date at job start Mon Mar 30 2020 03:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47540 * 2 1 4 4 C 1.50702 * 109.47113 * 240.00122 * 2 1 3 5 5 H 1.08001 * 120.00113 * 245.46613 * 4 2 1 6 6 C 1.37878 * 119.99699 * 65.46751 * 4 2 1 7 7 N 1.31508 * 120.00226 * 9.64816 * 6 4 2 8 8 Si 1.86799 * 119.99982 * 189.65021 * 6 4 2 9 9 H 1.48503 * 109.47049 * 84.99290 * 8 6 4 10 10 H 1.48496 * 109.47702 * 204.99208 * 8 6 4 11 11 H 1.48500 * 109.47325 * 324.99824 * 8 6 4 12 12 C 1.50707 * 109.47448 * 120.00594 * 2 1 3 13 13 O 1.21276 * 120.00292 * 119.99754 * 12 2 1 14 14 N 1.34773 * 119.99370 * 299.99787 * 12 2 1 15 15 C 1.46501 * 119.99905 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47430 * 180.02562 * 15 14 12 17 17 H 1.09002 * 115.54869 * 29.33276 * 16 15 14 18 18 C 1.53005 * 117.49906 * 243.62359 * 16 15 14 19 19 C 1.53001 * 59.99935 * 252.51130 * 18 16 15 20 20 H 1.08996 * 117.52151 * 107.48342 * 19 18 16 21 21 C 1.53000 * 117.50014 * 252.51302 * 19 18 16 22 22 C 1.53001 * 117.50395 * 197.24678 * 21 19 18 23 23 C 1.52996 * 117.50350 * 128.61686 * 21 19 18 24 24 H 1.09001 * 109.47036 * 303.68765 * 1 2 3 25 25 H 1.08996 * 109.47397 * 63.68749 * 1 2 3 26 26 H 1.09002 * 109.47267 * 183.69261 * 1 2 3 27 27 H 0.97003 * 120.00235 * 179.97438 * 7 6 4 28 28 H 0.96997 * 120.00499 * 0.02562 * 14 12 2 29 29 H 1.09000 * 109.46961 * 59.99778 * 15 14 12 30 30 H 1.08999 * 109.46988 * 300.00272 * 15 14 12 31 31 H 1.08999 * 117.49647 * 145.01934 * 18 16 15 32 32 H 1.08999 * 117.49555 * 359.97438 * 18 16 15 33 33 H 1.09001 * 115.54647 * 342.95120 * 21 19 18 34 34 H 1.09000 * 117.49241 * 359.97438 * 22 21 19 35 35 H 1.08996 * 117.50030 * 145.02311 * 22 21 19 36 36 H 1.09001 * 117.50332 * 214.98194 * 23 21 19 37 37 H 1.09005 * 117.49908 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5784 -1.6371 -1.1339 6 6 1.7946 -0.1772 -2.4796 7 7 1.3011 1.0365 -2.5935 8 14 2.1735 -1.1787 -4.0102 9 1 1.0199 -2.0600 -4.3232 10 1 2.4209 -0.2628 -5.1525 11 1 3.3808 -2.0099 -3.7716 12 6 2.0323 -0.7106 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1946 -0.9411 3.6507 16 6 1.6843 -0.2202 4.9000 17 1 0.7301 0.2949 4.7887 18 6 2.7255 0.4125 5.8254 19 6 1.9892 -0.8572 6.2572 20 1 2.5529 -1.7900 6.2602 21 6 0.9316 -0.7220 7.3545 22 6 0.4876 -1.9999 8.0693 23 6 -0.4529 -1.3115 7.0780 24 1 -0.3633 0.5700 0.8551 25 1 -0.3634 0.4555 -0.9211 26 1 -0.3634 -1.0255 0.0662 27 1 1.1342 1.4117 -3.4723 28 1 1.1488 0.5383 2.5436 29 1 3.2846 -0.9415 3.6508 30 1 1.8309 -1.9686 3.6504 31 1 2.4565 1.3442 6.3231 32 1 3.7741 0.3148 5.5444 33 1 0.9800 0.1937 7.9439 34 1 0.9487 -2.9370 7.7574 35 1 0.2439 -1.9251 9.1290 36 1 -1.3153 -0.7839 7.4856 37 1 -0.6105 -1.7954 6.1140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597756521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:23 Heat of formation + Delta-G solvation = -5.631060 kcal Electronic energy + Delta-G solvation = -16375.138767 eV Core-core repulsion = 13732.410717 eV Total energy + Delta-G solvation = -2642.728050 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.21210 -38.34579 -35.78599 -33.64716 -33.30692 -30.54140 -26.82543 -25.06384 -23.77083 -22.63468 -22.37419 -20.93131 -20.17219 -19.02040 -16.46383 -16.03374 -15.93625 -15.31051 -14.79956 -14.49177 -14.22148 -13.84285 -13.26455 -12.93206 -12.60547 -12.22553 -11.82615 -11.60632 -11.57264 -11.26471 -11.05768 -10.98422 -10.85473 -10.78386 -10.60896 -10.26310 -10.01561 -9.91290 -9.68362 -8.99432 -8.47688 -8.35650 -8.31275 -6.02732 -4.01015 3.33883 3.36978 3.42062 3.48669 3.77569 3.83238 3.98498 4.42276 4.52052 4.63442 4.72970 4.87604 4.97681 5.14843 5.30307 5.32359 5.32848 5.44990 5.65632 5.70266 5.77548 5.92796 5.95798 5.99901 6.06741 6.18903 6.36758 6.58036 6.81854 6.90345 7.15570 7.47716 7.68473 8.00805 8.15509 8.51270 9.08019 9.30388 9.63032 11.07940 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.050593 B = 0.004216 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.305929 B = 6639.864364 C = 6705.440605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.027 3.973 3 H 0.059 0.941 4 C -0.503 4.503 5 H 0.074 0.926 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.519 3.481 13 O -0.548 6.548 14 N -0.745 5.745 15 C 0.151 3.849 16 C -0.154 4.154 17 H 0.110 0.890 18 C -0.168 4.168 19 C -0.118 4.118 20 H 0.107 0.893 21 C -0.124 4.124 22 C -0.178 4.178 23 C -0.177 4.177 24 H 0.017 0.983 25 H 0.075 0.925 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.396 0.604 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 -0.218 18.742 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.006 3.994 3 H 0.077 0.923 4 C -0.541 4.541 5 H 0.092 0.908 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C 0.308 3.692 13 O -0.424 6.424 14 N -0.399 5.399 15 C 0.026 3.974 16 C -0.172 4.172 17 H 0.128 0.872 18 C -0.205 4.205 19 C -0.136 4.136 20 H 0.125 0.875 21 C -0.142 4.142 22 C -0.215 4.215 23 C -0.214 4.214 24 H 0.036 0.964 25 H 0.094 0.906 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.230 0.770 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.196 -0.824 18.503 18.651 hybrid contribution -0.152 -0.024 -0.719 0.736 sum -2.348 -0.847 17.784 17.958 Atomic orbital electron populations 1.21665 0.96984 0.99096 1.00592 1.18881 0.93646 0.97421 0.89496 0.92329 1.21109 1.35170 1.08676 0.89139 0.90821 1.24945 0.95339 0.94718 0.99089 1.69960 1.45662 1.13964 1.23835 0.86529 0.78913 0.80027 0.82126 1.20575 1.21412 1.19789 1.21951 0.78534 0.84228 0.84470 1.90525 1.38068 1.26993 1.86832 1.46274 1.55493 1.32637 1.05495 1.20718 0.98431 0.95527 0.82687 1.22608 1.00440 1.03535 0.90623 0.87175 1.23186 0.97733 0.96410 1.03139 1.21829 1.00068 0.97792 0.93949 0.87499 1.21742 0.95132 0.97567 0.99746 1.22978 1.04211 0.96505 0.97804 1.22985 0.93184 1.04156 1.01076 0.96421 0.90644 0.94869 0.92984 0.77039 0.92124 0.92025 0.88721 0.88481 0.87780 0.88721 0.88972 0.88953 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.94 37.15 0.33 -2.52 16 2 C 0.03 0.67 2.50 -92.92 -0.23 0.44 16 3 H 0.06 1.55 8.09 -51.93 -0.42 1.13 16 4 C -0.50 -14.51 8.28 -34.44 -0.29 -14.80 16 5 H 0.07 2.25 6.79 -52.49 -0.36 1.89 16 6 C 0.06 1.70 5.17 -17.82 -0.09 1.61 16 7 N -0.90 -25.61 12.17 55.43 0.67 -24.93 16 8 Si 0.90 22.07 29.55 -169.99 -5.02 17.04 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 12 C 0.52 12.08 7.15 -10.98 -0.08 12.01 16 13 O -0.55 -14.69 15.47 5.56 0.09 -14.60 16 14 N -0.74 -13.19 5.46 -60.29 -0.33 -13.52 16 15 C 0.15 2.28 5.95 -4.04 -0.02 2.25 16 16 C -0.15 -1.75 5.49 -90.62 -0.50 -2.25 16 17 H 0.11 1.21 8.04 -51.93 -0.42 0.79 16 18 C -0.17 -1.67 9.90 -26.73 -0.26 -1.94 16 19 C -0.12 -1.17 5.59 -90.62 -0.51 -1.68 16 20 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 21 C -0.12 -1.10 5.87 -90.62 -0.53 -1.63 16 22 C -0.18 -1.45 10.25 -26.73 -0.27 -1.73 16 23 C -0.18 -1.55 10.18 -26.73 -0.27 -1.82 16 24 H 0.02 0.32 7.67 -51.93 -0.40 -0.08 16 25 H 0.07 1.88 6.83 -51.93 -0.35 1.52 16 26 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.40 6.06 7.89 -40.82 -0.32 5.74 16 29 H 0.06 0.97 7.88 -51.93 -0.41 0.56 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.10 0.98 8.03 -51.93 -0.42 0.56 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 312.03 15.07 4.70 4.70 Total: -1.00 -31.35 312.03 -8.65 -40.00 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.03 Total: 3.35 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.73 Total: -12.04 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.35 Total: -38.45 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: 0.09 Total: -14.60 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.35 -8.65 -40.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597756521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.368 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds