Wall clock time and date at job start Mon Mar 30 2020 03:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09000 * 109.47540 * 2 1 4 4 C 1.50702 * 109.47113 * 240.00122 * 2 1 3 5 5 H 1.08001 * 120.00113 * 245.46613 * 4 2 1 6 6 C 1.37878 * 119.99699 * 65.46751 * 4 2 1 7 7 N 1.31508 * 120.00226 * 9.64816 * 6 4 2 8 8 Si 1.86799 * 119.99982 * 189.65021 * 6 4 2 9 9 H 1.48503 * 109.47049 * 84.99290 * 8 6 4 10 10 H 1.48496 * 109.47702 * 204.99208 * 8 6 4 11 11 H 1.48500 * 109.47325 * 324.99824 * 8 6 4 12 12 C 1.50707 * 109.47448 * 120.00594 * 2 1 3 13 13 O 1.21276 * 120.00292 * 119.99754 * 12 2 1 14 14 N 1.34773 * 119.99370 * 299.99787 * 12 2 1 15 15 C 1.46501 * 119.99905 * 179.97438 * 14 12 2 16 16 C 1.52998 * 109.47430 * 180.02562 * 15 14 12 17 17 H 1.09002 * 115.54869 * 29.33276 * 16 15 14 18 18 C 1.53005 * 117.49906 * 243.62359 * 16 15 14 19 19 C 1.53001 * 59.99935 * 252.51130 * 18 16 15 20 20 H 1.08996 * 117.52151 * 107.48342 * 19 18 16 21 21 C 1.53000 * 117.50014 * 252.51302 * 19 18 16 22 22 C 1.53001 * 117.50395 * 197.24678 * 21 19 18 23 23 C 1.52996 * 117.50350 * 128.61686 * 21 19 18 24 24 H 1.09001 * 109.47036 * 303.68765 * 1 2 3 25 25 H 1.08996 * 109.47397 * 63.68749 * 1 2 3 26 26 H 1.09002 * 109.47267 * 183.69261 * 1 2 3 27 27 H 0.97003 * 120.00235 * 179.97438 * 7 6 4 28 28 H 0.96997 * 120.00499 * 0.02562 * 14 12 2 29 29 H 1.09000 * 109.46961 * 59.99778 * 15 14 12 30 30 H 1.08999 * 109.46988 * 300.00272 * 15 14 12 31 31 H 1.08999 * 117.49647 * 145.01934 * 18 16 15 32 32 H 1.08999 * 117.49555 * 359.97438 * 18 16 15 33 33 H 1.09001 * 115.54647 * 342.95120 * 21 19 18 34 34 H 1.09000 * 117.49241 * 359.97438 * 22 21 19 35 35 H 1.08996 * 117.50030 * 145.02311 * 22 21 19 36 36 H 1.09001 * 117.50332 * 214.98194 * 23 21 19 37 37 H 1.09005 * 117.49908 * 359.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.5784 -1.6371 -1.1339 6 6 1.7946 -0.1772 -2.4796 7 7 1.3011 1.0365 -2.5935 8 14 2.1735 -1.1787 -4.0102 9 1 1.0199 -2.0600 -4.3232 10 1 2.4209 -0.2628 -5.1525 11 1 3.3808 -2.0099 -3.7716 12 6 2.0323 -0.7106 1.2304 13 8 2.7296 -1.6966 1.1191 14 7 1.7068 -0.2501 2.4545 15 6 2.1946 -0.9411 3.6507 16 6 1.6843 -0.2202 4.9000 17 1 0.7301 0.2949 4.7887 18 6 2.7255 0.4125 5.8254 19 6 1.9892 -0.8572 6.2572 20 1 2.5529 -1.7900 6.2602 21 6 0.9316 -0.7220 7.3545 22 6 0.4876 -1.9999 8.0693 23 6 -0.4529 -1.3115 7.0780 24 1 -0.3633 0.5700 0.8551 25 1 -0.3634 0.4555 -0.9211 26 1 -0.3634 -1.0255 0.0662 27 1 1.1342 1.4117 -3.4723 28 1 1.1488 0.5383 2.5436 29 1 3.2846 -0.9415 3.6508 30 1 1.8309 -1.9686 3.6504 31 1 2.4565 1.3442 6.3231 32 1 3.7741 0.3148 5.5444 33 1 0.9800 0.1937 7.9439 34 1 0.9487 -2.9370 7.7574 35 1 0.2439 -1.9251 9.1290 36 1 -1.3153 -0.7839 7.4856 37 1 -0.6105 -1.7954 6.1140 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597756521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:22 Heat of formation + Delta-G solvation = -24.251920 kcal Electronic energy + Delta-G solvation = -16375.946228 eV Core-core repulsion = 13732.410717 eV Total energy + Delta-G solvation = -2643.535511 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.66208 -39.51817 -36.72747 -35.71986 -34.78752 -32.54978 -28.19088 -27.13563 -24.62925 -24.14007 -23.25868 -21.96843 -21.32325 -20.40765 -18.39425 -17.79753 -17.05800 -16.50407 -16.31568 -16.20772 -15.55389 -14.98842 -14.60084 -14.56338 -14.24878 -13.64459 -13.47066 -12.93811 -12.80149 -12.59674 -12.51706 -12.31634 -12.24961 -12.17596 -11.98869 -11.80924 -11.57852 -11.08508 -10.81293 -10.61497 -10.50701 -10.24269 -9.90171 -8.19097 -6.24350 1.40800 1.41380 1.52487 1.93315 2.29775 2.47537 2.76692 3.07162 3.13354 3.60525 3.80319 3.96449 4.12937 4.20210 4.25910 4.36199 4.41773 4.57556 4.72580 4.73143 4.77243 4.83817 4.93045 4.94023 4.99981 5.06723 5.22009 5.26763 5.30794 5.38307 5.48343 5.62559 5.73244 5.84971 6.18199 6.75620 6.88076 7.39779 7.55256 8.90479 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.050593 B = 0.004216 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.305929 B = 6639.864364 C = 6705.440605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.022 3.978 3 H 0.045 0.955 4 C -0.532 4.532 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.271 1.271 10 H -0.276 1.276 11 H -0.279 1.279 12 C 0.519 3.481 13 O -0.591 6.591 14 N -0.722 5.722 15 C 0.152 3.848 16 C -0.160 4.160 17 H 0.120 0.880 18 C -0.159 4.159 19 C -0.110 4.110 20 H 0.103 0.897 21 C -0.127 4.127 22 C -0.175 4.175 23 C -0.182 4.182 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.029 0.971 27 H 0.265 0.735 28 H 0.411 0.589 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 0.376 20.119 20.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.000 4.000 3 H 0.063 0.937 4 C -0.570 4.570 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.201 1.201 11 H -0.204 1.204 12 C 0.308 3.692 13 O -0.471 6.471 14 N -0.375 5.375 15 C 0.029 3.971 16 C -0.179 4.179 17 H 0.138 0.862 18 C -0.196 4.196 19 C -0.129 4.129 20 H 0.121 0.879 21 C -0.145 4.145 22 C -0.212 4.212 23 C -0.219 4.219 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.074 0.926 28 H 0.247 0.753 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.135 0.865 34 H 0.109 0.891 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.965 -0.192 19.920 20.140 hybrid contribution 0.094 -0.194 -1.088 1.110 sum -2.871 -0.387 18.831 19.053 Atomic orbital electron populations 1.21490 0.95005 0.99349 1.01217 1.18825 0.95224 0.96271 0.89632 0.93716 1.21256 1.36062 1.08373 0.91333 0.93457 1.25585 0.95083 0.95628 1.01452 1.70019 1.45699 1.14651 1.24694 0.85660 0.78600 0.78857 0.79099 1.19658 1.20062 1.20446 1.21573 0.78278 0.83647 0.85686 1.90501 1.40118 1.28858 1.87621 1.45994 1.54287 1.32530 1.04701 1.20804 0.97907 0.95382 0.83052 1.22431 1.01345 1.04615 0.89472 0.86190 1.23268 0.97192 0.97171 1.01940 1.21869 1.00137 0.97763 0.93094 0.87912 1.21781 0.94651 0.98454 0.99584 1.23060 1.03557 0.96059 0.98533 1.23008 0.93618 1.04435 1.00830 0.92346 0.92878 0.95177 0.92558 0.75297 0.93071 0.93068 0.86941 0.88757 0.86536 0.89072 0.87504 0.87820 0.89665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.05 8.94 71.98 0.64 -4.40 16 2 C 0.02 1.11 2.50 -12.29 -0.03 1.08 16 3 H 0.05 2.39 8.09 -2.39 -0.02 2.37 16 4 C -0.53 -31.40 8.28 25.60 0.21 -31.19 16 5 H 0.05 2.99 6.79 -2.91 -0.02 2.97 16 6 C 0.02 1.25 5.17 84.66 0.44 1.69 16 7 N -0.91 -52.12 12.17 21.45 0.26 -51.86 16 8 Si 0.95 45.43 29.55 68.60 2.03 47.45 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 12 C 0.52 24.42 7.15 87.66 0.63 25.05 16 13 O -0.59 -32.53 15.47 -3.02 -0.05 -32.58 16 14 N -0.72 -24.98 5.46 -463.06 -2.53 -27.51 16 15 C 0.15 4.51 5.95 86.38 0.51 5.02 16 16 C -0.16 -3.35 5.49 -10.79 -0.06 -3.41 16 17 H 0.12 2.32 8.04 -2.39 -0.02 2.30 16 18 C -0.16 -2.80 9.90 30.60 0.30 -2.49 16 19 C -0.11 -1.97 5.59 -10.79 -0.06 -2.03 16 20 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 21 C -0.13 -1.92 5.87 -10.79 -0.06 -1.98 16 22 C -0.18 -2.47 10.25 30.60 0.31 -2.16 16 23 C -0.18 -2.80 10.18 30.60 0.31 -2.49 16 24 H 0.06 2.08 7.67 -2.39 -0.02 2.07 16 25 H 0.05 2.62 6.83 -2.39 -0.02 2.60 16 26 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 28 H 0.41 11.79 7.89 -92.71 -0.73 11.06 16 29 H 0.05 1.63 7.88 -2.39 -0.02 1.61 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.74 8.03 -2.39 -0.02 1.72 16 33 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -67.84 312.03 3.17 -64.67 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.31 Total: 17.14 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 3.15 Total: -17.32 kcal Atomic # 7 Polarization: -77.10 SS G_CDS: -2.27 Total: -79.37 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.05 Total: -32.58 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -67.84 3.17 -64.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597756521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.418 kcal (2) G-P(sol) polarization free energy of solvation -67.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds