Wall clock time and date at job start Mon Mar 30 2020 03:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47021 * 2 1 4 4 C 1.50693 * 109.47695 * 239.99204 * 2 1 3 5 5 H 1.07999 * 120.00485 * 245.36179 * 4 2 1 6 6 C 1.37882 * 119.99564 * 65.35473 * 4 2 1 7 7 N 1.31509 * 120.00275 * 5.14671 * 6 4 2 8 8 Si 1.86799 * 119.99773 * 185.14302 * 6 4 2 9 9 H 1.48508 * 109.47192 * 85.00274 * 8 6 4 10 10 H 1.48501 * 109.47520 * 325.00087 * 8 6 4 11 11 H 1.48508 * 109.47290 * 204.99889 * 8 6 4 12 12 C 1.50703 * 109.47161 * 119.99242 * 2 1 3 13 13 O 1.21280 * 120.00063 * 120.00158 * 12 2 1 14 14 N 1.34777 * 119.99851 * 300.00392 * 12 2 1 15 15 C 1.46500 * 119.99893 * 179.97438 * 14 12 2 16 16 H 1.08995 * 109.26772 * 325.49967 * 15 14 12 17 17 C 1.52876 * 109.26900 * 85.00150 * 15 14 12 18 18 C 1.53304 * 108.59059 * 65.37580 * 17 15 14 19 19 C 1.52873 * 108.57845 * 74.44489 * 18 17 15 20 20 C 1.52710 * 110.15454 * 305.47816 * 19 18 17 21 21 H 1.09004 * 115.39020 * 231.21458 * 20 19 18 22 22 C 1.53644 * 116.03008 * 90.20533 * 20 19 18 23 23 C 1.52059 * 120.52354 * 21.47442 * 20 19 18 24 24 H 1.08999 * 115.93224 * 209.99371 * 23 20 19 25 25 H 1.08992 * 109.47480 * 294.99162 * 1 2 3 26 26 H 1.08993 * 109.46657 * 54.99698 * 1 2 3 27 27 H 1.09004 * 109.46489 * 174.99212 * 1 2 3 28 28 H 0.97005 * 120.00273 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00519 * 0.02562 * 14 12 2 30 30 H 1.08997 * 109.61827 * 185.10716 * 17 15 14 31 31 H 1.09006 * 109.61058 * 305.46941 * 17 15 14 32 32 H 1.08993 * 109.62008 * 194.17824 * 18 17 15 33 33 H 1.09000 * 109.61552 * 314.53385 * 18 17 15 34 34 H 1.09000 * 109.35580 * 65.69369 * 19 18 17 35 35 H 1.09011 * 109.35263 * 185.27175 * 19 18 17 36 36 H 1.08999 * 117.53906 * 355.69077 * 22 20 19 37 37 H 1.09002 * 117.54371 * 140.93817 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.5801 -1.6363 -1.1334 6 6 1.7929 -0.1787 -2.4796 7 7 1.2156 0.9974 -2.5940 8 14 2.2882 -1.1288 -4.0098 9 1 1.2116 -2.0869 -4.3677 10 1 3.5455 -1.8733 -3.7449 11 1 2.5013 -0.1814 -5.1334 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6963 1.1194 14 7 1.7067 -0.2497 2.4546 15 6 2.1946 -0.9404 3.6509 16 1 2.2380 -2.0118 3.4550 17 6 3.5960 -0.4325 3.9905 18 6 3.4982 1.0464 4.3819 19 6 2.8924 1.1406 5.7823 20 6 1.5599 0.3961 5.8303 21 1 0.7225 0.9625 6.2379 22 6 1.6307 -1.0885 6.2194 23 6 1.2394 -0.6804 4.8053 24 1 0.1849 -0.8056 4.5594 25 1 -0.3634 0.4341 0.9314 26 1 -0.3632 0.5895 -0.8418 27 1 -0.3632 -1.0238 -0.0897 28 1 1.0467 1.3714 -3.4730 29 1 1.1487 0.5388 2.5436 30 1 4.0009 -1.0058 4.8244 31 1 4.2452 -0.5418 3.1217 32 1 4.4933 1.4913 4.3829 33 1 2.8630 1.5724 3.6692 34 1 3.5795 0.6984 6.5037 35 1 2.7302 2.1883 6.0361 36 1 2.6190 -1.5254 6.3626 37 1 0.8452 -1.4778 6.8672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597762614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:50 Heat of formation + Delta-G solvation = -35.366394 kcal Electronic energy + Delta-G solvation = -17291.896606 eV Core-core repulsion = 14647.879136 eV Total energy + Delta-G solvation = -2644.017471 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.04378 -38.12423 -33.90210 -33.61031 -32.58281 -30.69606 -28.85185 -25.07002 -24.64491 -22.65749 -22.27552 -21.16566 -19.20842 -18.37503 -16.56149 -16.15413 -15.71818 -15.01550 -14.64114 -14.37476 -13.83807 -13.44852 -13.30367 -13.08053 -12.47255 -12.37025 -12.18170 -11.57954 -11.44186 -11.06891 -10.95730 -10.85884 -10.79827 -10.60996 -10.41404 -10.21906 -9.99959 -9.91289 -9.66266 -8.95441 -8.49308 -8.33121 -8.29995 -6.01254 -4.01024 3.36955 3.41936 3.48062 3.57238 3.80389 4.05581 4.51018 4.61088 4.74076 4.95733 5.00752 5.15348 5.28087 5.34351 5.35822 5.53559 5.66041 5.71814 5.87422 5.90046 6.01470 6.07330 6.16014 6.28983 6.38135 6.45214 6.48375 6.62993 6.83423 6.93356 7.21787 7.50775 7.71176 8.01697 8.17894 8.53738 9.08214 9.33186 9.63773 11.09097 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.046204 B = 0.005623 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.869085 B = 4978.482178 C = 5037.619324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.028 3.972 3 H 0.057 0.943 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.273 1.273 11 H -0.288 1.288 12 C 0.520 3.480 13 O -0.548 6.548 14 N -0.738 5.738 15 C 0.177 3.823 16 H 0.084 0.916 17 C -0.131 4.131 18 C -0.118 4.118 19 C -0.087 4.087 20 C -0.145 4.145 21 H 0.100 0.900 22 C -0.177 4.177 23 C -0.146 4.146 24 H 0.103 0.897 25 H 0.014 0.986 26 H 0.076 0.924 27 H 0.034 0.966 28 H 0.260 0.740 29 H 0.395 0.605 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.257 1.287 16.349 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.007 3.993 3 H 0.074 0.926 4 C -0.539 4.539 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.214 1.214 12 C 0.310 3.690 13 O -0.423 6.423 14 N -0.391 5.391 15 C 0.072 3.928 16 H 0.102 0.898 17 C -0.170 4.170 18 C -0.156 4.156 19 C -0.125 4.125 20 C -0.163 4.163 21 H 0.118 0.882 22 C -0.215 4.215 23 C -0.164 4.164 24 H 0.121 0.879 25 H 0.033 0.967 26 H 0.095 0.905 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.229 0.771 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.203 0.677 16.105 16.121 hybrid contribution -0.170 -0.057 -0.740 0.761 sum 0.033 0.620 15.366 15.378 Atomic orbital electron populations 1.21681 0.96948 1.00309 0.99486 1.18868 0.93711 0.97217 0.89533 0.92558 1.21116 1.34858 1.08732 0.89177 0.90851 1.24951 0.95315 0.94828 0.99096 1.69933 1.43726 1.16254 1.23735 0.86507 0.79137 0.79646 0.82149 1.20615 1.19819 1.21400 1.21937 0.78446 0.84121 0.84491 1.90520 1.38077 1.26982 1.86769 1.46321 1.55210 1.32394 1.05212 1.19940 0.91472 0.97845 0.83557 0.89761 1.21981 0.97432 0.96070 1.01508 1.21523 1.00713 0.96955 0.96384 1.21043 0.94332 0.99599 0.97514 1.22240 0.99408 0.90923 1.03778 0.88173 1.23102 1.02952 0.98092 0.97338 1.22036 1.00376 1.03379 0.90656 0.87934 0.96651 0.90497 0.94663 0.93021 0.77150 0.91807 0.90926 0.92128 0.91232 0.91892 0.91784 0.88633 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.91 37.16 0.33 -2.55 16 2 C 0.03 0.70 2.51 -92.92 -0.23 0.46 16 3 H 0.06 1.48 8.12 -51.93 -0.42 1.05 16 4 C -0.50 -14.36 8.30 -34.44 -0.29 -14.65 16 5 H 0.07 2.23 6.78 -52.49 -0.36 1.87 16 6 C 0.06 1.66 5.29 -17.82 -0.09 1.56 16 7 N -0.90 -25.59 11.98 55.43 0.66 -24.93 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.52 11.89 7.11 -10.98 -0.08 11.82 16 13 O -0.55 -14.35 15.12 5.56 0.08 -14.27 16 14 N -0.74 -12.91 4.18 -54.33 -0.23 -13.13 16 15 C 0.18 2.69 2.70 -68.46 -0.18 2.51 16 16 H 0.08 1.47 7.55 -51.93 -0.39 1.07 16 17 C -0.13 -1.86 5.34 -26.64 -0.14 -2.00 16 18 C -0.12 -1.45 5.90 -26.64 -0.16 -1.60 16 19 C -0.09 -0.88 5.83 -26.95 -0.16 -1.04 16 20 C -0.15 -1.49 6.19 -90.91 -0.56 -2.05 16 21 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 22 C -0.18 -1.78 9.66 -26.76 -0.26 -2.04 16 23 C -0.15 -1.75 5.45 -91.93 -0.50 -2.25 16 24 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 25 H 0.01 0.28 7.43 -51.93 -0.39 -0.11 16 26 H 0.08 1.91 6.84 -51.93 -0.36 1.55 16 27 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.39 6.15 7.79 -40.82 -0.32 5.83 16 30 H 0.06 0.79 7.11 -51.93 -0.37 0.43 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.93 7.24 -51.93 -0.38 0.55 16 34 H 0.06 0.59 8.06 -51.93 -0.42 0.17 16 35 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.10 0.95 7.26 -51.93 -0.38 0.57 16 37 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 294.79 15.07 4.44 4.44 Total: -1.00 -30.66 294.79 -8.24 -38.90 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -5.86 Total: 3.76 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -2.32 Total: -11.83 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.44 Total: -38.06 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: 0.08 Total: -14.27 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.66 -8.24 -38.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597762614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.532 kcal (2) G-P(sol) polarization free energy of solvation -30.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds