Wall clock time and date at job start Mon Mar 30 2020 03:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47021 * 2 1 4 4 C 1.50693 * 109.47695 * 239.99204 * 2 1 3 5 5 H 1.07999 * 120.00485 * 245.36179 * 4 2 1 6 6 C 1.37882 * 119.99564 * 65.35473 * 4 2 1 7 7 N 1.31509 * 120.00275 * 5.14671 * 6 4 2 8 8 Si 1.86799 * 119.99773 * 185.14302 * 6 4 2 9 9 H 1.48508 * 109.47192 * 85.00274 * 8 6 4 10 10 H 1.48501 * 109.47520 * 325.00087 * 8 6 4 11 11 H 1.48508 * 109.47290 * 204.99889 * 8 6 4 12 12 C 1.50703 * 109.47161 * 119.99242 * 2 1 3 13 13 O 1.21280 * 120.00063 * 120.00158 * 12 2 1 14 14 N 1.34777 * 119.99851 * 300.00392 * 12 2 1 15 15 C 1.46500 * 119.99893 * 179.97438 * 14 12 2 16 16 H 1.08995 * 109.26772 * 325.49967 * 15 14 12 17 17 C 1.52876 * 109.26900 * 85.00150 * 15 14 12 18 18 C 1.53304 * 108.59059 * 65.37580 * 17 15 14 19 19 C 1.52873 * 108.57845 * 74.44489 * 18 17 15 20 20 C 1.52710 * 110.15454 * 305.47816 * 19 18 17 21 21 H 1.09004 * 115.39020 * 231.21458 * 20 19 18 22 22 C 1.53644 * 116.03008 * 90.20533 * 20 19 18 23 23 C 1.52059 * 120.52354 * 21.47442 * 20 19 18 24 24 H 1.08999 * 115.93224 * 209.99371 * 23 20 19 25 25 H 1.08992 * 109.47480 * 294.99162 * 1 2 3 26 26 H 1.08993 * 109.46657 * 54.99698 * 1 2 3 27 27 H 1.09004 * 109.46489 * 174.99212 * 1 2 3 28 28 H 0.97005 * 120.00273 * 180.02562 * 7 6 4 29 29 H 0.97001 * 120.00519 * 0.02562 * 14 12 2 30 30 H 1.08997 * 109.61827 * 185.10716 * 17 15 14 31 31 H 1.09006 * 109.61058 * 305.46941 * 17 15 14 32 32 H 1.08993 * 109.62008 * 194.17824 * 18 17 15 33 33 H 1.09000 * 109.61552 * 314.53385 * 18 17 15 34 34 H 1.09000 * 109.35580 * 65.69369 * 19 18 17 35 35 H 1.09011 * 109.35263 * 185.27175 * 19 18 17 36 36 H 1.08999 * 117.53906 * 355.69077 * 22 20 19 37 37 H 1.09002 * 117.54371 * 140.93817 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.5801 -1.6363 -1.1334 6 6 1.7929 -0.1787 -2.4796 7 7 1.2156 0.9974 -2.5940 8 14 2.2882 -1.1288 -4.0098 9 1 1.2116 -2.0869 -4.3677 10 1 3.5455 -1.8733 -3.7449 11 1 2.5013 -0.1814 -5.1334 12 6 2.0324 -0.7103 1.2306 13 8 2.7297 -1.6963 1.1194 14 7 1.7067 -0.2497 2.4546 15 6 2.1946 -0.9404 3.6509 16 1 2.2380 -2.0118 3.4550 17 6 3.5960 -0.4325 3.9905 18 6 3.4982 1.0464 4.3819 19 6 2.8924 1.1406 5.7823 20 6 1.5599 0.3961 5.8303 21 1 0.7225 0.9625 6.2379 22 6 1.6307 -1.0885 6.2194 23 6 1.2394 -0.6804 4.8053 24 1 0.1849 -0.8056 4.5594 25 1 -0.3634 0.4341 0.9314 26 1 -0.3632 0.5895 -0.8418 27 1 -0.3632 -1.0238 -0.0897 28 1 1.0467 1.3714 -3.4730 29 1 1.1487 0.5388 2.5436 30 1 4.0009 -1.0058 4.8244 31 1 4.2452 -0.5418 3.1217 32 1 4.4933 1.4913 4.3829 33 1 2.8630 1.5724 3.6692 34 1 3.5795 0.6984 6.5037 35 1 2.7302 2.1883 6.0361 36 1 2.6190 -1.5254 6.3626 37 1 0.8452 -1.4778 6.8672 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597762614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:50 Heat of formation + Delta-G solvation = -53.778555 kcal Electronic energy + Delta-G solvation = -17292.695018 eV Core-core repulsion = 14647.879136 eV Total energy + Delta-G solvation = -2644.815882 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29334 -39.67269 -35.73477 -35.28183 -33.66951 -32.61231 -30.16502 -27.16989 -25.85739 -24.07420 -23.60958 -22.04746 -20.94103 -19.57051 -18.29196 -17.82288 -17.11865 -16.69781 -16.17091 -15.94268 -15.01654 -14.93775 -14.72499 -14.30327 -14.25042 -13.59701 -13.56202 -13.20285 -12.92824 -12.80495 -12.57787 -12.39842 -12.23383 -12.07550 -11.97223 -11.83284 -11.40980 -11.06286 -10.90416 -10.59256 -10.55500 -10.26253 -9.86473 -8.17949 -6.24810 1.40281 1.40619 1.52002 1.96885 2.31436 2.49038 2.94108 3.14462 3.66813 3.81897 3.99522 4.03091 4.15631 4.27284 4.32690 4.52522 4.61712 4.69428 4.74030 4.85169 4.89804 4.94140 4.96882 5.00086 5.09296 5.20192 5.33100 5.35108 5.36534 5.48055 5.49422 5.69367 5.75607 5.86960 6.18967 6.77244 6.89714 7.40401 7.59160 8.91094 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.046204 B = 0.005623 C = 0.005557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.869085 B = 4978.482178 C = 5037.619324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.023 3.977 3 H 0.042 0.958 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.522 3.478 13 O -0.589 6.589 14 N -0.716 5.716 15 C 0.176 3.824 16 H 0.057 0.943 17 C -0.129 4.129 18 C -0.116 4.116 19 C -0.084 4.084 20 C -0.135 4.135 21 H 0.119 0.881 22 C -0.164 4.164 23 C -0.164 4.164 24 H 0.105 0.895 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 1.980 18.226 18.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.002 3.998 3 H 0.060 0.940 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.200 1.200 12 C 0.311 3.689 13 O -0.469 6.469 14 N -0.368 5.368 15 C 0.072 3.928 16 H 0.075 0.925 17 C -0.167 4.167 18 C -0.154 4.154 19 C -0.121 4.121 20 C -0.153 4.153 21 H 0.137 0.863 22 C -0.201 4.201 23 C -0.182 4.182 24 H 0.123 0.877 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.243 0.757 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.115 0.885 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.497 1.406 18.024 18.085 hybrid contribution 0.065 -0.257 -1.278 1.305 sum -0.432 1.148 16.746 16.791 Atomic orbital electron populations 1.21496 0.95143 0.99717 1.00713 1.18799 0.95146 0.96055 0.89779 0.94033 1.21258 1.35679 1.08447 0.91343 0.93482 1.25600 0.95194 0.95652 1.01473 1.69998 1.43788 1.16877 1.24570 0.85635 0.78594 0.78699 0.79109 1.19759 1.20476 1.19997 1.21508 0.78197 0.83535 0.85625 1.90496 1.40062 1.28817 1.87530 1.46051 1.54028 1.32220 1.04514 1.20051 0.93166 0.96001 0.83610 0.92531 1.21934 0.95958 0.98130 1.00694 1.21510 1.01187 0.94929 0.97756 1.21056 0.94313 1.00890 0.95857 1.22354 1.00019 0.91097 1.01811 0.86292 1.23218 1.03594 0.98045 0.95247 1.21862 0.99443 1.06490 0.90437 0.87707 0.92628 0.92516 0.95459 0.92613 0.75695 0.89831 0.94643 0.91485 0.92577 0.90604 0.90066 0.88469 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.14 8.91 71.98 0.64 -4.49 16 2 C 0.02 1.20 2.51 -12.29 -0.03 1.17 16 3 H 0.04 2.24 8.12 -2.39 -0.02 2.22 16 4 C -0.53 -31.32 8.30 25.60 0.21 -31.11 16 5 H 0.05 2.99 6.78 -2.91 -0.02 2.97 16 6 C 0.02 1.14 5.29 84.66 0.45 1.59 16 7 N -0.91 -52.36 11.98 21.45 0.26 -52.11 16 8 Si 0.95 45.71 29.54 68.60 2.03 47.73 16 9 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 12 C 0.52 24.57 7.11 87.66 0.62 25.20 16 13 O -0.59 -32.33 15.12 -3.03 -0.05 -32.37 16 14 N -0.72 -25.06 4.18 -444.18 -1.86 -26.91 16 15 C 0.18 5.30 2.70 44.65 0.12 5.42 16 16 H 0.06 2.02 7.55 -2.39 -0.02 2.01 16 17 C -0.13 -3.60 5.34 30.65 0.16 -3.43 16 18 C -0.12 -2.65 5.90 30.65 0.18 -2.47 16 19 C -0.08 -1.40 5.83 30.46 0.18 -1.22 16 20 C -0.13 -2.26 6.19 -10.98 -0.07 -2.33 16 21 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 22 C -0.16 -2.73 9.66 30.58 0.30 -2.43 16 23 C -0.16 -3.57 5.45 -11.64 -0.06 -3.63 16 24 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.05 2.03 7.43 -2.39 -0.02 2.01 16 26 H 0.06 2.81 6.84 -2.39 -0.02 2.80 16 27 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 29 H 0.41 12.24 7.79 -92.71 -0.72 11.52 16 30 H 0.08 1.98 7.11 -2.39 -0.02 1.97 16 31 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 33 H 0.06 1.42 7.24 -2.39 -0.02 1.41 16 34 H 0.08 1.12 8.06 -2.39 -0.02 1.10 16 35 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.10 1.61 7.26 -2.39 -0.02 1.59 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -67.93 294.79 3.41 -64.52 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.33 Total: 16.87 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 2.70 Total: -17.73 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -1.60 Total: -79.02 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -0.05 Total: -32.37 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.93 3.41 -64.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597762614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.744 kcal (2) G-P(sol) polarization free energy of solvation -67.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds