Wall clock time and date at job start Mon Mar 30 2020 03:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 C 1.50698 * 109.47178 * 240.00135 * 2 1 3 13 13 O 1.21287 * 119.99891 * 240.00024 * 12 2 1 14 14 N 1.34770 * 120.00389 * 59.99950 * 12 2 1 15 15 C 1.46507 * 120.00402 * 180.02562 * 14 12 2 16 16 C 1.53944 * 113.58039 * 254.24274 * 15 14 12 17 17 C 1.53067 * 86.72770 * 220.68748 * 16 15 14 18 18 C 1.52908 * 121.17423 * 150.58278 * 17 16 15 19 19 C 1.53950 * 86.77986 * 100.75702 * 18 17 16 20 20 C 1.52906 * 121.07341 * 259.12815 * 17 16 15 21 21 C 1.52915 * 88.07013 * 24.83697 * 17 16 15 22 22 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 23 23 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 24 24 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 26 26 H 0.97004 * 120.00047 * 0.02562 * 14 12 2 27 27 H 1.08999 * 112.81879 * 25.33238 * 15 14 12 28 28 H 1.09001 * 113.66550 * 335.14072 * 16 15 14 29 29 H 1.09002 * 113.66274 * 106.19273 * 16 15 14 30 30 H 1.09005 * 113.66308 * 215.22135 * 18 17 16 31 31 H 1.08999 * 113.66544 * 346.28828 * 18 17 16 32 32 H 1.08999 * 113.58085 * 270.12799 * 19 18 17 33 33 H 1.09002 * 113.65006 * 139.34340 * 19 18 17 34 34 H 1.09003 * 113.66127 * 13.62152 * 20 17 16 35 35 H 1.08994 * 113.66729 * 144.68461 * 20 17 16 36 36 H 1.08998 * 113.66466 * 220.70040 * 21 17 16 37 37 H 1.09000 * 113.66504 * 89.63308 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.6255 -0.5556 4.4149 10 1 1.3363 -0.9505 5.1107 11 1 2.4747 -2.5706 3.7106 12 6 2.0323 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6508 16 6 3.3283 -0.1923 -4.3750 17 6 2.6398 -0.5938 -5.6819 18 6 2.7483 0.2774 -6.9338 19 6 3.8165 -0.7156 -7.4266 20 6 3.1544 -1.7667 -6.5171 21 6 1.3294 -0.6947 -4.9002 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7136 1.1647 3.4844 26 1 1.1494 0.5389 -2.5436 27 1 2.4123 -1.9938 -3.4716 28 1 3.3290 0.8824 -4.1931 29 1 4.3095 -0.6470 -4.2390 30 1 1.8437 0.2841 -7.5419 31 1 3.1370 1.2769 -6.7389 32 1 4.8297 -0.4524 -7.1229 33 1 3.7404 -0.9483 -8.4888 34 1 3.8676 -2.3999 -5.9893 35 1 2.3640 -2.3343 -7.0079 36 1 0.7161 -1.5503 -5.1829 37 1 0.7673 0.2385 -4.8660 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597821627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:07 Heat of formation + Delta-G solvation = -29.696340 kcal Electronic energy + Delta-G solvation = -16870.811223 eV Core-core repulsion = 14227.039624 eV Total energy + Delta-G solvation = -2643.771599 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.58264 -40.09036 -36.46129 -35.74716 -33.56978 -31.98673 -27.20701 -26.79609 -26.61293 -25.59895 -23.90966 -21.70402 -21.15554 -18.80022 -18.35152 -17.71325 -17.17540 -16.43518 -16.37876 -16.00701 -15.60944 -15.02476 -14.47107 -14.18560 -13.72642 -13.55812 -13.32548 -13.17203 -12.97225 -12.94176 -12.68469 -12.59286 -12.22543 -12.04046 -12.00812 -11.88633 -11.15587 -11.04472 -11.02673 -10.86047 -10.57147 -10.23132 -9.83912 -8.15338 -6.25566 1.40295 1.40634 1.52975 1.93574 2.37740 2.57968 3.14111 3.46648 3.54627 3.66805 3.90679 3.93917 4.00540 4.27953 4.56520 4.59095 4.74059 4.76754 4.78978 4.88443 4.92942 4.95264 5.00855 5.04716 5.05264 5.09782 5.13359 5.31878 5.49635 5.54676 5.59885 5.70764 5.78362 5.95527 6.22392 6.76625 6.88967 7.40278 7.58062 8.90601 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.057323 B = 0.004777 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.341860 B = 5859.544776 C = 6092.858545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.022 3.978 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.046 0.954 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.520 3.480 13 O -0.592 6.592 14 N -0.714 5.714 15 C 0.109 3.891 16 C -0.126 4.126 17 C -0.100 4.100 18 C -0.118 4.118 19 C -0.136 4.136 20 C -0.123 4.123 21 C -0.117 4.117 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.021 0.979 25 H 0.265 0.735 26 H 0.410 0.590 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 1.056 -19.346 19.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 H 0.059 0.941 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.205 1.205 12 C 0.309 3.691 13 O -0.472 6.472 14 N -0.366 5.366 15 C 0.004 3.996 16 C -0.165 4.165 17 C -0.101 4.101 18 C -0.155 4.155 19 C -0.173 4.173 20 C -0.160 4.160 21 C -0.155 4.155 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.246 0.754 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.399 0.468 -19.127 19.137 hybrid contribution 0.233 -0.169 1.226 1.260 sum 0.632 0.298 -17.901 17.914 Atomic orbital electron populations 1.21540 0.94969 0.99347 1.01742 1.18826 0.95416 0.95912 0.89771 0.94132 1.21294 1.31714 1.12565 0.91252 0.93534 1.25600 0.95161 0.95792 1.01407 1.69950 1.37342 1.23447 1.24306 0.85597 0.78419 0.78750 0.79130 1.19984 1.19796 1.20451 1.21583 0.78038 0.83559 0.85890 1.90494 1.40150 1.28914 1.87612 1.46020 1.53901 1.32054 1.04651 1.22540 0.96761 0.96766 0.83491 1.23190 0.97692 1.00958 0.94682 1.22254 0.95952 0.99130 0.92764 1.22736 0.99780 0.97684 0.95298 1.22798 0.98325 0.96400 0.99778 1.22751 1.00323 0.95654 0.97269 1.23158 0.96399 1.03353 0.92630 0.91132 0.92829 0.95967 0.92584 0.75370 0.90153 0.89099 0.92535 0.88544 0.91231 0.90698 0.90146 0.92448 0.88611 0.90169 0.87959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.87 71.98 0.64 -4.80 16 2 C 0.02 1.13 2.64 -12.29 -0.03 1.10 16 3 H 0.04 2.15 8.14 -2.39 -0.02 2.14 16 4 C -0.53 -31.41 8.37 25.60 0.21 -31.19 16 5 H 0.05 2.96 6.75 -2.92 -0.02 2.94 16 6 C 0.02 1.11 5.30 84.66 0.45 1.55 16 7 N -0.91 -51.74 11.33 21.45 0.24 -51.50 16 8 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 9 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 12 C 0.52 24.59 7.15 87.66 0.63 25.22 16 13 O -0.59 -32.74 15.08 -3.05 -0.05 -32.79 16 14 N -0.71 -24.83 5.25 -439.51 -2.31 -27.14 16 15 C 0.11 3.26 4.21 45.63 0.19 3.45 16 16 C -0.13 -3.22 7.65 30.94 0.24 -2.98 16 17 C -0.10 -1.95 1.11 -52.26 -0.06 -2.01 16 18 C -0.12 -1.77 7.84 30.88 0.24 -1.53 16 19 C -0.14 -2.02 8.08 31.23 0.25 -1.77 16 20 C -0.12 -2.17 7.84 30.89 0.24 -1.92 16 21 C -0.12 -2.43 7.59 30.89 0.23 -2.20 16 22 H 0.07 3.59 6.08 -2.39 -0.01 3.57 16 23 H 0.05 1.97 7.57 -2.38 -0.02 1.95 16 24 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 26 H 0.41 11.80 8.13 -92.71 -0.75 11.05 16 27 H 0.08 2.86 7.50 -2.39 -0.02 2.84 16 28 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.10 1.81 8.11 -2.39 -0.02 1.79 16 Total: -1.00 -67.95 301.19 3.45 -64.51 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.29 Total: 16.37 kcal Atomic # 6 Polarization: -20.33 SS G_CDS: 3.24 Total: -17.09 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -2.07 Total: -78.64 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.05 Total: -32.79 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -67.95 3.45 -64.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597821627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.811 kcal (2) G-P(sol) polarization free energy of solvation -67.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds