Wall clock time and date at job start Mon Mar 30 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 O 1.21277 * 120.00023 * 119.99783 * 12 2 1 14 14 N 1.34774 * 119.99464 * 300.00010 * 12 2 1 15 15 C 1.46505 * 119.99513 * 179.97438 * 14 12 2 16 16 C 1.53006 * 115.54912 * 179.91050 * 15 14 12 17 17 C 1.53788 * 113.61119 * 63.08323 * 16 15 14 18 18 C 1.53781 * 87.08129 * 220.02094 * 17 16 15 19 19 C 1.53781 * 87.08225 * 25.43023 * 18 17 16 20 20 C 1.52994 * 117.49826 * 34.20963 * 15 14 12 21 21 C 1.52995 * 117.50120 * 325.58609 * 15 14 12 22 22 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 23 23 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 0.96995 * 120.00581 * 0.02562 * 14 12 2 27 27 H 1.08991 * 112.85026 * 194.39029 * 16 15 14 28 28 H 1.08999 * 113.61221 * 334.56875 * 17 16 15 29 29 H 1.09002 * 113.61349 * 105.46964 * 17 16 15 30 30 H 1.09004 * 113.61128 * 270.88740 * 18 17 16 31 31 H 1.08996 * 113.61609 * 139.98286 * 18 17 16 32 32 H 1.09000 * 113.62122 * 220.01951 * 19 18 17 33 33 H 1.09005 * 113.61185 * 89.11724 * 19 18 17 34 34 H 1.08995 * 117.50085 * 359.97438 * 20 15 14 35 35 H 1.09002 * 117.49848 * 145.01558 * 20 15 14 36 36 H 1.09001 * 117.49615 * 214.98108 * 21 15 14 37 37 H 1.08998 * 117.50032 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9409 3.6507 16 6 1.7657 -0.3305 4.9865 17 6 0.2449 -0.3533 5.2141 18 6 0.3933 1.0534 5.8173 19 6 1.6590 1.2033 4.9569 20 6 3.5819 -1.5822 3.5796 21 6 2.3311 -2.4632 3.5809 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7011 1.1560 -3.4844 26 1 1.1488 0.5384 2.5435 27 1 2.3406 -0.7120 5.8302 28 1 -0.3344 -0.3737 4.2910 29 1 -0.0775 -1.1055 5.9341 30 1 0.5919 1.0501 6.8891 31 1 -0.4089 1.7357 5.5365 32 1 2.4782 1.7079 5.4693 33 1 1.4662 1.6085 3.9635 34 1 4.1314 -1.4903 2.6428 35 1 4.1894 -1.5691 4.4845 36 1 2.1156 -3.0298 4.4868 37 1 2.0575 -2.9507 2.6452 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597823621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:00 Heat of formation + Delta-G solvation = 3.619620 kcal Electronic energy + Delta-G solvation = -17416.358178 eV Core-core repulsion = 14774.031268 eV Total energy + Delta-G solvation = -2642.326910 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.13629 -38.15992 -35.49146 -33.67512 -32.26839 -30.03406 -26.15322 -25.63804 -25.11432 -22.95789 -21.91777 -20.57654 -19.66248 -18.57245 -16.83776 -16.13200 -15.56441 -14.94248 -14.63414 -14.15493 -13.94927 -13.39420 -13.02056 -12.70796 -12.45554 -12.43759 -12.36775 -11.56375 -11.05645 -10.97443 -10.95675 -10.83658 -10.68994 -10.59613 -10.53898 -10.23413 -10.04802 -9.93855 -9.68766 -8.97051 -8.49200 -8.23408 -7.96137 -6.01550 -4.04543 3.37345 3.39653 3.45068 3.62203 3.83081 4.22408 4.48510 4.58944 4.65028 4.72984 4.97769 5.18705 5.25098 5.31781 5.57110 5.60854 5.67951 5.75930 5.87196 5.94143 5.99090 6.07751 6.15913 6.24515 6.46774 6.52183 6.63409 6.80014 6.84109 6.94948 7.26705 7.49364 7.77247 8.01485 8.18164 8.48935 9.04106 9.28721 9.60950 11.06081 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037782 B = 0.006406 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.917762 B = 4369.671336 C = 4841.044609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.539 6.539 14 N -0.710 5.710 15 C 0.109 3.891 16 C -0.073 4.073 17 C -0.135 4.135 18 C -0.144 4.144 19 C -0.137 4.137 20 C -0.181 4.181 21 C -0.178 4.178 22 H 0.093 0.907 23 H 0.031 0.969 24 H 0.010 0.990 25 H 0.261 0.739 26 H 0.397 0.603 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 0.924 15.360 15.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.415 6.415 14 N -0.363 5.363 15 C 0.021 3.979 16 C -0.091 4.091 17 C -0.172 4.172 18 C -0.181 4.181 19 C -0.174 4.174 20 C -0.219 4.219 21 C -0.217 4.217 22 H 0.112 0.888 23 H 0.050 0.950 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.232 0.768 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -0.921 0.336 15.097 15.129 hybrid contribution 0.041 -0.065 -0.779 0.783 sum -0.880 0.271 14.318 14.348 Atomic orbital electron populations 1.21742 0.96613 0.99796 1.00857 1.18871 0.94085 0.96803 0.89396 0.93144 1.21100 1.30877 1.12851 0.88970 0.90824 1.24952 0.95125 0.95089 0.99105 1.69864 1.37086 1.23153 1.23601 0.86506 0.79240 0.79720 0.81650 1.20230 1.21400 1.20223 1.21956 0.78483 0.84351 0.84210 1.90478 1.37724 1.26662 1.86666 1.45710 1.54489 1.31854 1.04253 1.20380 0.98901 0.92231 0.86401 1.22174 0.96777 0.95858 0.94334 1.22946 0.95948 0.96980 1.01322 1.22837 0.98346 0.97564 0.99356 1.22949 0.98102 0.95719 1.00646 1.23376 0.91233 1.04035 1.03263 1.23311 1.02211 0.92911 1.03219 0.88831 0.95013 0.97054 0.92938 0.76753 0.88338 0.89659 0.91549 0.90365 0.91329 0.91338 0.89749 0.87128 0.89881 0.89881 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.86 37.16 0.33 -2.73 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.22 8.38 -34.44 -0.29 -14.50 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.33 11.31 55.43 0.63 -24.70 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.52 11.80 6.85 -10.99 -0.08 11.73 16 13 O -0.54 -13.60 10.94 5.56 0.06 -13.54 16 14 N -0.71 -12.67 5.27 -47.61 -0.25 -12.92 16 15 C 0.11 1.70 2.65 -131.82 -0.35 1.35 16 16 C -0.07 -0.85 3.77 -89.80 -0.34 -1.19 16 17 C -0.13 -1.45 7.63 -25.92 -0.20 -1.65 16 18 C -0.14 -1.34 8.08 -25.92 -0.21 -1.55 16 19 C -0.14 -1.47 7.48 -25.92 -0.19 -1.66 16 20 C -0.18 -2.98 9.43 -26.74 -0.25 -3.23 16 21 C -0.18 -2.94 9.44 -26.74 -0.25 -3.19 16 22 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.01 0.21 7.56 -51.93 -0.39 -0.19 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.40 6.29 6.21 -40.82 -0.25 6.04 16 27 H 0.10 1.04 8.13 -51.93 -0.42 0.61 16 28 H 0.08 1.03 8.09 -51.93 -0.42 0.61 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.98 6.15 -51.93 -0.32 0.66 16 34 H 0.11 2.20 6.36 -51.93 -0.33 1.87 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.11 2.20 6.39 -51.93 -0.33 1.87 16 LS Contribution 294.04 15.07 4.43 4.43 Total: -1.00 -29.94 294.04 -7.98 -37.92 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.66 Total: 6.46 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: -2.17 Total: -14.61 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.38 Total: -37.63 kcal Atomic # 8 Polarization: -13.60 SS G_CDS: 0.06 Total: -13.54 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.94 -7.98 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597823621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.537 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds