Wall clock time and date at job start Mon Mar 30 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 13 13 O 1.21277 * 120.00023 * 119.99783 * 12 2 1 14 14 N 1.34774 * 119.99464 * 300.00010 * 12 2 1 15 15 C 1.46505 * 119.99513 * 179.97438 * 14 12 2 16 16 C 1.53006 * 115.54912 * 179.91050 * 15 14 12 17 17 C 1.53788 * 113.61119 * 63.08323 * 16 15 14 18 18 C 1.53781 * 87.08129 * 220.02094 * 17 16 15 19 19 C 1.53781 * 87.08225 * 25.43023 * 18 17 16 20 20 C 1.52994 * 117.49826 * 34.20963 * 15 14 12 21 21 C 1.52995 * 117.50120 * 325.58609 * 15 14 12 22 22 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 23 23 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 26 26 H 0.96995 * 120.00581 * 0.02562 * 14 12 2 27 27 H 1.08991 * 112.85026 * 194.39029 * 16 15 14 28 28 H 1.08999 * 113.61221 * 334.56875 * 17 16 15 29 29 H 1.09002 * 113.61349 * 105.46964 * 17 16 15 30 30 H 1.09004 * 113.61128 * 270.88740 * 18 17 16 31 31 H 1.08996 * 113.61609 * 139.98286 * 18 17 16 32 32 H 1.09000 * 113.62122 * 220.01951 * 19 18 17 33 33 H 1.09005 * 113.61185 * 89.11724 * 19 18 17 34 34 H 1.08995 * 117.50085 * 359.97438 * 20 15 14 35 35 H 1.09002 * 117.49848 * 145.01558 * 20 15 14 36 36 H 1.09001 * 117.49615 * 214.98108 * 21 15 14 37 37 H 1.08998 * 117.50032 * 359.97438 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1947 -0.9409 3.6507 16 6 1.7657 -0.3305 4.9865 17 6 0.2449 -0.3533 5.2141 18 6 0.3933 1.0534 5.8173 19 6 1.6590 1.2033 4.9569 20 6 3.5819 -1.5822 3.5796 21 6 2.3311 -2.4632 3.5809 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7011 1.1560 -3.4844 26 1 1.1488 0.5384 2.5435 27 1 2.3406 -0.7120 5.8302 28 1 -0.3344 -0.3737 4.2910 29 1 -0.0775 -1.1055 5.9341 30 1 0.5919 1.0501 6.8891 31 1 -0.4089 1.7357 5.5365 32 1 2.4782 1.7079 5.4693 33 1 1.4662 1.6085 3.9635 34 1 4.1314 -1.4903 2.6428 35 1 4.1894 -1.5691 4.4845 36 1 2.1156 -3.0298 4.4868 37 1 2.0575 -2.9507 2.6452 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597823621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:00 Heat of formation + Delta-G solvation = -14.220838 kcal Electronic energy + Delta-G solvation = -17417.131799 eV Core-core repulsion = 14774.031268 eV Total energy + Delta-G solvation = -2643.100530 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.51372 -39.47752 -36.85488 -35.67896 -33.99318 -31.98486 -27.29389 -27.05764 -26.46120 -24.76905 -23.23366 -21.93262 -21.01165 -19.85511 -18.39455 -18.22368 -16.66591 -16.60788 -16.18311 -15.82536 -15.40663 -14.93717 -14.51390 -14.44249 -13.69458 -13.51531 -13.38479 -13.26059 -12.96841 -12.74299 -12.60296 -12.34881 -12.16406 -12.07392 -11.98563 -11.84085 -11.37840 -11.08579 -11.06699 -10.79602 -10.57392 -10.12747 -9.44949 -8.16480 -6.26866 1.39605 1.41111 1.49718 1.87144 2.28784 2.48357 2.95613 3.13329 3.63547 3.69759 3.83132 3.99447 4.05516 4.23862 4.36018 4.48893 4.65620 4.72070 4.81023 4.89112 4.90696 4.92776 4.96314 4.99821 5.11584 5.15669 5.17820 5.33805 5.41937 5.46987 5.63286 5.70825 5.80739 5.93097 6.19883 6.73641 6.85907 7.39009 7.56654 8.89313 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037782 B = 0.006406 C = 0.005782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.917762 B = 4369.671336 C = 4841.044609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.024 3.976 3 H 0.037 0.963 4 C -0.528 4.528 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.956 3.044 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.277 1.277 12 C 0.519 3.481 13 O -0.571 6.571 14 N -0.694 5.694 15 C 0.111 3.889 16 C -0.069 4.069 17 C -0.136 4.136 18 C -0.130 4.130 19 C -0.141 4.141 20 C -0.185 4.185 21 C -0.182 4.182 22 H 0.071 0.929 23 H 0.021 0.979 24 H 0.048 0.952 25 H 0.265 0.735 26 H 0.408 0.592 27 H 0.123 0.877 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.118 0.882 36 H 0.117 0.883 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.827 1.412 17.429 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.003 3.997 3 H 0.055 0.945 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.450 6.450 14 N -0.346 5.346 15 C 0.023 3.977 16 C -0.088 4.088 17 C -0.174 4.174 18 C -0.167 4.167 19 C -0.179 4.179 20 C -0.224 4.224 21 C -0.220 4.220 22 H 0.090 0.910 23 H 0.040 0.960 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.246 0.754 27 H 0.141 0.859 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.434 0.854 17.195 17.276 hybrid contribution 0.208 -0.207 -1.404 1.434 sum -1.226 0.647 15.792 15.852 Atomic orbital electron populations 1.21546 0.95181 0.99304 1.01604 1.18803 0.95240 0.95810 0.89828 0.94471 1.21244 1.31532 1.12784 0.91075 0.93336 1.25604 0.95180 0.95778 1.01437 1.69943 1.37141 1.23620 1.24375 0.85645 0.78614 0.78709 0.78851 1.20221 1.19839 1.20241 1.21498 0.78467 0.83933 0.85248 1.90478 1.39165 1.27986 1.87348 1.45452 1.53554 1.31824 1.03791 1.20808 0.98123 0.91756 0.87014 1.22334 0.97821 0.96346 0.92253 1.22948 0.94713 0.98585 1.01142 1.22805 0.97435 0.96348 1.00147 1.22981 0.99528 0.94858 1.00526 1.23330 0.91567 1.04646 1.02836 1.23244 1.02451 0.93577 1.02735 0.90994 0.95968 0.93263 0.92575 0.75406 0.85937 0.91354 0.90119 0.88343 0.90879 0.90167 0.91146 0.91218 0.86361 0.86481 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.86 71.98 0.64 -4.87 16 2 C 0.02 1.25 2.64 -12.29 -0.03 1.22 16 3 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 4 C -0.53 -31.07 8.38 25.60 0.21 -30.85 16 5 H 0.05 3.05 6.75 -2.91 -0.02 3.03 16 6 C 0.02 1.08 5.30 84.66 0.45 1.53 16 7 N -0.91 -51.82 11.31 21.45 0.24 -51.58 16 8 Si 0.96 45.59 29.54 68.60 2.03 47.62 16 9 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 C 0.52 24.24 6.85 87.66 0.60 24.84 16 13 O -0.57 -30.16 10.94 -3.02 -0.03 -30.20 16 14 N -0.69 -24.59 5.27 -422.93 -2.23 -26.81 16 15 C 0.11 3.30 2.65 3.60 0.01 3.31 16 16 C -0.07 -1.39 3.77 -10.26 -0.04 -1.43 16 17 C -0.14 -2.49 7.63 31.12 0.24 -2.25 16 18 C -0.13 -1.92 8.08 31.12 0.25 -1.67 16 19 C -0.14 -2.60 7.48 31.12 0.23 -2.37 16 20 C -0.19 -5.99 9.43 30.59 0.29 -5.70 16 21 C -0.18 -5.87 9.44 30.59 0.29 -5.58 16 22 H 0.07 3.68 6.06 -2.39 -0.01 3.67 16 23 H 0.02 1.02 8.14 -2.38 -0.02 1.01 16 24 H 0.05 1.86 7.56 -2.39 -0.02 1.84 16 25 H 0.27 14.27 8.31 -92.70 -0.77 13.50 16 26 H 0.41 12.55 6.21 -92.71 -0.58 11.97 16 27 H 0.12 1.99 8.13 -2.39 -0.02 1.97 16 28 H 0.07 1.49 8.09 -2.39 -0.02 1.47 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.49 6.15 -2.38 -0.01 1.48 16 34 H 0.07 2.87 6.36 -2.39 -0.02 2.85 16 35 H 0.12 2.93 8.14 -2.39 -0.02 2.92 16 36 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 37 H 0.07 2.86 6.39 -2.39 -0.02 2.85 16 Total: -1.00 -66.80 294.04 3.63 -63.17 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.48 Total: 21.63 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 3.14 Total: -23.83 kcal Atomic # 7 Polarization: -76.41 SS G_CDS: -1.99 Total: -78.39 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.03 Total: -30.20 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -66.80 3.63 -63.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597823621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.949 kcal (2) G-P(sol) polarization free energy of solvation -66.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds