Wall clock time and date at job start Mon Mar 30 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47341 * 2 1 4 4 C 1.50710 * 109.47161 * 119.99887 * 2 1 3 5 5 O 1.21276 * 120.00221 * 85.25248 * 4 2 1 6 6 N 1.34779 * 119.99723 * 265.25492 * 4 2 1 7 7 C 1.47062 * 136.05709 * 4.60105 * 6 4 2 8 8 C 1.53756 * 87.89010 * 152.96250 * 7 6 4 9 9 C 1.50694 * 114.08915 * 139.77466 * 8 7 6 10 10 H 1.08005 * 120.00315 * 266.56553 * 9 8 7 11 11 C 1.37881 * 119.99966 * 86.56370 * 9 8 7 12 12 N 1.31512 * 119.99873 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00224 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47153 * 59.99935 * 13 11 9 15 15 H 1.48497 * 109.47425 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47272 * 300.00068 * 13 11 9 17 17 C 1.47060 * 136.05743 * 184.96831 * 6 4 2 18 18 C 1.53000 * 109.47149 * 239.99306 * 2 1 3 19 19 C 1.53781 * 113.61253 * 157.49796 * 18 2 1 20 20 C 1.53786 * 87.07833 * 220.02369 * 19 18 2 21 21 C 1.53778 * 87.08086 * 25.43308 * 20 19 18 22 22 H 1.08996 * 109.47113 * 174.17750 * 1 2 3 23 23 H 1.09002 * 109.46986 * 54.17095 * 1 2 3 24 24 H 1.09002 * 109.46999 * 294.17305 * 1 2 3 25 25 H 1.09007 * 113.46934 * 267.69336 * 7 6 4 26 26 H 1.08994 * 113.47468 * 38.13149 * 7 6 4 27 27 H 1.08994 * 114.57305 * 272.66539 * 8 7 6 28 28 H 0.97003 * 119.99905 * 179.97438 * 12 11 9 29 29 H 1.09003 * 113.47057 * 321.87034 * 17 6 4 30 30 H 1.09007 * 113.46971 * 92.30375 * 17 6 4 31 31 H 1.08994 * 112.85156 * 288.80834 * 18 2 1 32 32 H 1.08994 * 113.61715 * 334.57119 * 19 18 2 33 33 H 1.08998 * 113.61685 * 105.48010 * 19 18 2 34 34 H 1.09003 * 113.61081 * 270.88014 * 20 19 18 35 35 H 1.08999 * 113.68759 * 139.99814 * 20 19 18 36 36 H 1.08999 * 113.61178 * 220.01458 * 21 20 19 37 37 H 1.09002 * 113.68710 * 89.13350 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.1526 -1.9172 1.2275 6 7 2.3480 -0.0046 2.3345 7 6 2.2651 1.4035 2.7506 8 6 2.1701 0.9094 4.2035 9 6 2.9556 1.7374 5.1875 10 1 3.9660 1.4557 5.4451 11 6 2.3846 2.8549 5.7588 12 7 1.1542 3.1977 5.4454 13 14 3.3580 3.8810 6.9790 14 1 4.5838 4.4009 6.3216 15 1 2.5254 5.0193 7.4437 16 1 3.7389 3.0387 8.1412 17 6 2.9329 -0.3024 3.6505 18 6 2.0400 -0.7214 -1.2491 19 6 3.4727 -0.3278 -1.6460 20 6 2.9921 -0.3575 -3.1065 21 6 1.5811 -0.0725 -2.5656 22 1 -0.3633 -1.0223 -0.1042 23 1 -0.3633 0.6016 -0.8332 24 1 -0.3633 0.4208 0.9376 25 1 3.1722 1.9715 2.5438 26 1 1.3634 1.9069 2.4020 27 1 1.1583 0.6846 4.5406 28 1 0.7523 3.9836 5.8477 29 1 2.6002 -1.2525 4.0685 30 1 4.0161 -0.1843 3.6809 31 1 1.8758 -1.7983 -1.2127 32 1 3.7639 0.6646 -1.3023 33 1 4.2152 -1.0917 -1.4151 34 1 3.0897 -1.3352 -3.5784 35 1 3.3970 0.4495 -3.7172 36 1 0.7966 -0.6301 -3.0771 37 1 1.3539 0.9896 -2.4731 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598020644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:25 Heat of formation + Delta-G solvation = 2.078477 kcal Electronic energy + Delta-G solvation = -17031.409972 eV Core-core repulsion = 14389.016233 eV Total energy + Delta-G solvation = -2642.393739 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.93026 -38.57578 -36.82858 -32.80467 -32.51638 -29.03278 -26.16640 -25.28698 -25.14835 -24.93128 -22.43728 -20.19133 -19.28273 -18.00897 -16.91115 -16.25582 -15.68723 -15.08579 -14.68887 -14.47035 -14.38504 -13.57958 -12.79620 -12.68736 -12.47531 -12.34497 -12.23846 -11.79991 -11.54983 -11.50531 -11.29145 -11.06268 -10.95006 -10.81300 -10.44872 -10.34865 -10.26762 -10.04678 -9.52721 -9.19541 -8.87914 -8.57646 -7.81600 -6.18566 -4.24175 3.22544 3.24966 3.30425 3.32471 3.64092 4.32975 4.60010 4.67293 4.74891 4.87897 5.09876 5.16618 5.31227 5.53308 5.56071 5.72158 5.75258 5.82295 5.86348 5.95519 6.03755 6.06175 6.09004 6.19550 6.25189 6.30743 6.35362 6.46586 6.58267 6.60798 6.70226 6.83838 7.55439 7.79194 8.18362 8.58828 8.79438 8.83716 9.42558 10.91161 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.039385 B = 0.005253 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.761729 B = 5329.024064 C = 5388.889145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 H 0.085 0.915 4 C 0.538 3.462 5 O -0.567 6.567 6 N -0.644 5.644 7 C 0.098 3.902 8 C 0.035 3.965 9 C -0.518 4.518 10 H 0.063 0.937 11 C 0.069 3.931 12 N -0.886 5.886 13 Si 0.896 3.104 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.097 3.903 18 C -0.092 4.092 19 C -0.139 4.139 20 C -0.141 4.141 21 C -0.134 4.134 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.264 0.736 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.619 -2.320 -12.539 12.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 H 0.103 0.897 4 C 0.328 3.672 5 O -0.447 6.447 6 N -0.377 5.377 7 C -0.024 4.024 8 C 0.016 3.984 9 C -0.556 4.556 10 H 0.081 0.919 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.723 3.277 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.025 4.025 18 C -0.111 4.111 19 C -0.177 4.177 20 C -0.179 4.179 21 C -0.171 4.171 22 H 0.078 0.922 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.476 -2.924 -12.690 13.031 hybrid contribution 0.525 0.759 0.640 1.123 sum 1.001 -2.165 -12.050 12.284 Atomic orbital electron populations 1.21640 0.92901 1.02444 1.02399 1.21202 0.97566 1.00039 0.92734 0.89665 1.20101 0.77555 0.86917 0.82635 1.90599 1.56434 1.14420 1.83294 1.50059 1.60546 1.12841 1.14284 1.23639 1.00122 0.81198 0.97457 1.20373 0.97097 0.90295 0.90614 1.20884 0.99993 1.09826 1.24907 0.91920 1.25023 0.94800 0.97452 0.96198 1.69943 1.13165 1.26014 1.43183 0.86596 0.79914 0.79674 0.81496 1.20080 1.21214 1.20035 1.23320 0.98314 1.00603 0.80233 1.22454 0.95920 1.00632 0.92078 1.22973 0.96873 1.01814 0.95999 1.22782 0.96978 1.01616 0.96487 1.22934 0.96799 1.01006 0.96386 0.92161 0.91804 0.92010 0.90956 0.92262 0.91379 0.92583 0.92591 0.91005 0.88212 0.90184 0.91599 0.90394 0.91643 0.91566 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.88 37.16 0.33 -1.57 16 2 C -0.09 -1.46 2.36 -91.77 -0.22 -1.67 16 3 H 0.09 1.27 7.66 -51.93 -0.40 0.88 16 4 C 0.54 10.74 7.07 -10.98 -0.08 10.67 16 5 O -0.57 -12.94 16.92 5.56 0.09 -12.85 16 6 N -0.64 -13.40 3.69 -185.08 -0.68 -14.09 16 7 C 0.10 2.08 7.78 -8.38 -0.07 2.02 16 8 C 0.04 0.84 3.80 -91.12 -0.35 0.49 16 9 C -0.52 -13.20 8.82 -34.44 -0.30 -13.50 16 10 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 11 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.89 -24.07 13.26 55.43 0.74 -23.33 16 13 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 C 0.10 2.09 8.18 -8.52 -0.07 2.02 16 18 C -0.09 -1.26 2.90 -89.81 -0.26 -1.52 16 19 C -0.14 -1.76 7.62 -25.92 -0.20 -1.96 16 20 C -0.14 -1.46 8.08 -25.92 -0.21 -1.67 16 21 C -0.13 -1.43 6.80 -25.92 -0.18 -1.61 16 22 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 26 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.07 1.76 8.11 -51.93 -0.42 1.34 16 28 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 31 H 0.10 1.51 7.64 -51.93 -0.40 1.11 16 32 H 0.08 1.01 7.96 -51.93 -0.41 0.59 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -28.33 307.05 -8.15 -36.49 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.22 Total: 0.80 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.69 Total: -6.63 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.05 Total: -37.42 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.33 -8.15 -36.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598020644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.566 kcal (2) G-P(sol) polarization free energy of solvation -28.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds