Wall clock time and date at job start Mon Mar 30 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47341 * 2 1 4 4 C 1.50710 * 109.47161 * 119.99887 * 2 1 3 5 5 O 1.21276 * 120.00221 * 85.25248 * 4 2 1 6 6 N 1.34779 * 119.99723 * 265.25492 * 4 2 1 7 7 C 1.47062 * 136.05709 * 4.60105 * 6 4 2 8 8 C 1.53756 * 87.89010 * 152.96250 * 7 6 4 9 9 C 1.50694 * 114.08915 * 139.77466 * 8 7 6 10 10 H 1.08005 * 120.00315 * 266.56553 * 9 8 7 11 11 C 1.37881 * 119.99966 * 86.56370 * 9 8 7 12 12 N 1.31512 * 119.99873 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00224 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47153 * 59.99935 * 13 11 9 15 15 H 1.48497 * 109.47425 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47272 * 300.00068 * 13 11 9 17 17 C 1.47060 * 136.05743 * 184.96831 * 6 4 2 18 18 C 1.53000 * 109.47149 * 239.99306 * 2 1 3 19 19 C 1.53781 * 113.61253 * 157.49796 * 18 2 1 20 20 C 1.53786 * 87.07833 * 220.02369 * 19 18 2 21 21 C 1.53778 * 87.08086 * 25.43308 * 20 19 18 22 22 H 1.08996 * 109.47113 * 174.17750 * 1 2 3 23 23 H 1.09002 * 109.46986 * 54.17095 * 1 2 3 24 24 H 1.09002 * 109.46999 * 294.17305 * 1 2 3 25 25 H 1.09007 * 113.46934 * 267.69336 * 7 6 4 26 26 H 1.08994 * 113.47468 * 38.13149 * 7 6 4 27 27 H 1.08994 * 114.57305 * 272.66539 * 8 7 6 28 28 H 0.97003 * 119.99905 * 179.97438 * 12 11 9 29 29 H 1.09003 * 113.47057 * 321.87034 * 17 6 4 30 30 H 1.09007 * 113.46971 * 92.30375 * 17 6 4 31 31 H 1.08994 * 112.85156 * 288.80834 * 18 2 1 32 32 H 1.08994 * 113.61715 * 334.57119 * 19 18 2 33 33 H 1.08998 * 113.61685 * 105.48010 * 19 18 2 34 34 H 1.09003 * 113.61081 * 270.88014 * 20 19 18 35 35 H 1.08999 * 113.68759 * 139.99814 * 20 19 18 36 36 H 1.08999 * 113.61178 * 220.01458 * 21 20 19 37 37 H 1.09002 * 113.68710 * 89.13350 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.1526 -1.9172 1.2275 6 7 2.3480 -0.0046 2.3345 7 6 2.2651 1.4035 2.7506 8 6 2.1701 0.9094 4.2035 9 6 2.9556 1.7374 5.1875 10 1 3.9660 1.4557 5.4451 11 6 2.3846 2.8549 5.7588 12 7 1.1542 3.1977 5.4454 13 14 3.3580 3.8810 6.9790 14 1 4.5838 4.4009 6.3216 15 1 2.5254 5.0193 7.4437 16 1 3.7389 3.0387 8.1412 17 6 2.9329 -0.3024 3.6505 18 6 2.0400 -0.7214 -1.2491 19 6 3.4727 -0.3278 -1.6460 20 6 2.9921 -0.3575 -3.1065 21 6 1.5811 -0.0725 -2.5656 22 1 -0.3633 -1.0223 -0.1042 23 1 -0.3633 0.6016 -0.8332 24 1 -0.3633 0.4208 0.9376 25 1 3.1722 1.9715 2.5438 26 1 1.3634 1.9069 2.4020 27 1 1.1583 0.6846 4.5406 28 1 0.7523 3.9836 5.8477 29 1 2.6002 -1.2525 4.0685 30 1 4.0161 -0.1843 3.6809 31 1 1.8758 -1.7983 -1.2127 32 1 3.7639 0.6646 -1.3023 33 1 4.2152 -1.0917 -1.4151 34 1 3.0897 -1.3352 -3.5784 35 1 3.3970 0.4495 -3.7172 36 1 0.7966 -0.6301 -3.0771 37 1 1.3539 0.9896 -2.4731 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598020644.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:25 Heat of formation + Delta-G solvation = -13.082560 kcal Electronic energy + Delta-G solvation = -17032.067404 eV Core-core repulsion = 14389.016233 eV Total energy + Delta-G solvation = -2643.051171 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.41520 -39.89014 -38.42696 -34.66504 -33.86714 -30.79044 -27.42206 -26.85762 -26.68632 -26.13842 -23.79433 -21.83667 -20.29818 -19.61295 -18.76849 -17.87680 -17.08708 -16.58121 -16.17057 -16.05716 -15.60854 -15.16695 -14.35685 -14.05506 -13.90242 -13.51705 -13.36689 -13.27282 -13.12437 -13.06283 -12.73764 -12.62830 -12.54678 -12.18877 -12.15509 -11.43983 -11.38905 -11.21783 -11.06253 -11.03530 -10.61482 -10.45668 -9.55391 -8.16348 -6.27845 1.49392 1.50081 1.57659 1.63848 2.03509 2.46826 3.13724 3.42915 3.65112 3.73464 3.89392 4.00403 4.21628 4.28500 4.36574 4.38332 4.44623 4.54844 4.68829 4.74955 4.82740 4.84795 4.87020 4.87630 4.94041 5.00524 5.05930 5.11429 5.13975 5.22548 5.39486 5.58454 5.62763 5.80802 6.22930 6.80249 6.93149 7.18931 7.42286 8.93500 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.039385 B = 0.005253 C = 0.005195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.761729 B = 5329.024064 C = 5388.889145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.088 4.088 3 H 0.095 0.905 4 C 0.532 3.468 5 O -0.599 6.599 6 N -0.647 5.647 7 C 0.116 3.884 8 C 0.024 3.976 9 C -0.530 4.530 10 H 0.066 0.934 11 C 0.023 3.977 12 N -0.918 5.918 13 Si 0.959 3.041 14 H -0.267 1.267 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.101 3.899 18 C -0.100 4.100 19 C -0.147 4.147 20 C -0.130 4.130 21 C -0.121 4.121 22 H 0.055 0.945 23 H 0.097 0.903 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.061 0.939 27 H 0.037 0.963 28 H 0.265 0.735 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.102 -1.308 -13.977 14.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 H 0.113 0.887 4 C 0.324 3.676 5 O -0.482 6.482 6 N -0.380 5.380 7 C -0.007 4.007 8 C 0.004 3.996 9 C -0.568 4.568 10 H 0.084 0.916 11 C -0.178 4.178 12 N -0.556 5.556 13 Si 0.784 3.216 14 H -0.192 1.192 15 H -0.212 1.212 16 H -0.198 1.198 17 C -0.022 4.022 18 C -0.119 4.119 19 C -0.184 4.184 20 C -0.168 4.168 21 C -0.158 4.158 22 H 0.074 0.926 23 H 0.115 0.885 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.966 -1.916 -14.138 14.300 hybrid contribution 0.368 0.363 1.112 1.226 sum 1.334 -1.553 -13.027 13.186 Atomic orbital electron populations 1.21647 0.91620 1.02768 1.02940 1.21295 0.98500 1.00025 0.91065 0.88722 1.21023 0.76521 0.86727 0.83358 1.90577 1.57682 1.15996 1.83934 1.50118 1.60746 1.12666 1.14492 1.23372 1.00535 0.81305 0.95480 1.20253 0.95665 0.91742 0.91902 1.21177 1.00266 1.10046 1.25323 0.91587 1.25754 0.95617 0.98558 0.97840 1.70052 1.14583 1.26575 1.44413 0.85596 0.78690 0.78002 0.79291 1.19169 1.21193 1.19763 1.23222 0.98716 0.99478 0.80748 1.22485 0.97185 0.99609 0.92648 1.23040 0.95915 1.01347 0.98142 1.22752 0.96318 1.02675 0.95009 1.22915 0.97461 1.01547 0.93912 0.92569 0.88470 0.93614 0.90092 0.92101 0.94435 0.92598 0.93007 0.89840 0.90147 0.90040 0.93052 0.89769 0.89928 0.90201 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 8.88 71.98 0.64 -2.85 16 2 C -0.09 -2.61 2.36 -11.54 -0.03 -2.64 16 3 H 0.09 2.64 7.66 -2.39 -0.02 2.63 16 4 C 0.53 21.20 7.07 87.66 0.62 21.82 16 5 O -0.60 -27.71 16.92 -3.02 -0.05 -27.76 16 6 N -0.65 -26.95 3.69 -857.87 -3.16 -30.11 16 7 C 0.12 4.86 7.78 83.26 0.65 5.51 16 8 C 0.02 1.14 3.80 -11.12 -0.04 1.09 16 9 C -0.53 -27.00 8.82 25.60 0.23 -26.77 16 10 H 0.07 3.25 7.81 -2.91 -0.02 3.22 16 11 C 0.02 1.17 5.46 84.66 0.46 1.63 16 12 N -0.92 -50.14 13.26 21.45 0.28 -49.86 16 13 Si 0.96 40.60 29.54 68.60 2.03 42.62 16 14 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 15 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 C 0.10 4.35 8.18 83.17 0.68 5.03 16 18 C -0.10 -2.59 2.90 -10.27 -0.03 -2.62 16 19 C -0.15 -3.50 7.62 31.12 0.24 -3.27 16 20 C -0.13 -2.31 8.08 31.12 0.25 -2.06 16 21 C -0.12 -2.20 6.80 31.12 0.21 -1.99 16 22 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.10 1.92 7.66 -2.39 -0.02 1.90 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.08 3.27 8.10 -2.38 -0.02 3.25 16 26 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.04 2.01 8.11 -2.39 -0.02 2.00 16 28 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 3.39 8.10 -2.38 -0.02 3.37 16 31 H 0.08 2.40 7.64 -2.39 -0.02 2.38 16 32 H 0.08 1.90 7.96 -2.39 -0.02 1.89 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.51 8.10 -2.39 -0.02 1.49 16 Total: -1.00 -60.45 307.05 3.99 -56.46 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 1.02 Total: 15.74 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 3.87 Total: -7.11 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -2.88 Total: -79.97 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Total: -60.45 3.99 -56.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598020644.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.379 kcal (2) G-P(sol) polarization free energy of solvation -60.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds