Wall clock time and date at job start Mon Mar 30 2020 03:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00131 * 2 1 4 4 C 1.50702 * 119.99914 * 179.97438 * 2 1 3 5 5 C 1.52996 * 109.47010 * 95.00284 * 4 2 1 6 6 H 1.09002 * 109.46943 * 55.00222 * 5 4 2 7 7 C 1.53001 * 109.47211 * 294.99886 * 5 4 2 8 8 C 1.50702 * 109.47054 * 174.99697 * 5 4 2 9 9 O 1.21283 * 119.99718 * 35.77121 * 8 5 4 10 10 N 1.34776 * 120.00143 * 215.76252 * 8 5 4 11 11 C 1.47063 * 136.05474 * 176.40760 * 10 8 5 12 12 C 1.53503 * 87.98522 * 207.38329 * 11 10 8 13 13 C 1.50697 * 114.20896 * 220.34736 * 12 11 10 14 14 H 1.07999 * 119.99973 * 93.59549 * 13 12 11 15 15 C 1.37874 * 120.00054 * 273.60401 * 13 12 11 16 16 N 1.31519 * 120.00178 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00266 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47383 * 59.99161 * 17 15 13 19 19 H 1.48497 * 109.47635 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47024 * 299.99648 * 17 15 13 21 21 C 1.47061 * 136.05853 * 356.78904 * 10 8 5 22 22 H 1.08004 * 119.99947 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00028 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47527 * 239.99583 * 3 2 1 25 25 H 1.09005 * 109.47182 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47328 * 119.99680 * 3 2 1 27 27 H 1.09001 * 109.47145 * 335.00164 * 4 2 1 28 28 H 1.09006 * 109.47057 * 215.00118 * 4 2 1 29 29 H 1.08998 * 109.46640 * 66.11755 * 7 5 4 30 30 H 1.08993 * 109.47165 * 186.11558 * 7 5 4 31 31 H 1.08998 * 109.46747 * 306.11514 * 7 5 4 32 32 H 1.08994 * 113.47435 * 322.16669 * 11 10 8 33 33 H 1.09009 * 113.46698 * 92.60789 * 11 10 8 34 34 H 1.08997 * 114.20100 * 87.52083 * 12 11 10 35 35 H 0.96996 * 120.00347 * 180.02562 * 16 15 13 36 36 H 1.09003 * 113.46901 * 267.39733 * 21 10 8 37 37 H 1.09006 * 113.46713 * 37.83458 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4362 6 1 2.9771 -0.8655 -1.9001 7 6 1.1488 -1.9557 -2.2316 8 6 3.2853 -2.9234 -1.4267 9 8 3.0833 -3.7946 -0.6074 10 7 4.2770 -3.0634 -2.3286 11 6 5.3337 -4.0507 -2.5958 12 6 6.1614 -2.9165 -3.2163 13 6 6.9063 -3.3077 -4.4665 14 1 6.4602 -3.1403 -5.4357 15 6 8.1574 -3.8796 -4.3730 16 7 8.7009 -4.0832 -3.1928 17 14 9.0812 -4.3639 -5.9226 18 1 9.2987 -3.1610 -6.7658 19 1 10.3935 -4.9527 -5.5532 20 1 8.2861 -5.3628 -6.6812 21 6 4.7829 -2.2926 -3.4743 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 2.6902 1.3628 -0.8899 25 1 1.3552 2.1336 -0.0005 26 1 2.6901 1.3628 0.8900 27 1 1.4385 -2.0853 0.4352 28 1 2.9742 -1.1986 0.5900 29 1 0.5799 -1.0313 -2.3310 30 1 1.4092 -2.3303 -3.2214 31 1 0.5465 -2.6987 -1.7088 32 1 5.7774 -4.4673 -1.6917 33 1 5.0404 -4.8168 -3.3137 34 1 6.7737 -2.3674 -2.5011 35 1 9.5812 -4.4852 -3.1270 36 1 4.3429 -2.5904 -4.4261 37 1 4.7582 -1.2143 -3.3170 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598022182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:42 Heat of formation + Delta-G solvation = -3.346473 kcal Electronic energy + Delta-G solvation = -16786.944559 eV Core-core repulsion = 14144.315577 eV Total energy + Delta-G solvation = -2642.628983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.68140 -37.68166 -36.29719 -32.79923 -32.50665 -29.09251 -27.33020 -27.02621 -25.39939 -24.97696 -22.58260 -20.08178 -18.39577 -18.02828 -16.84995 -16.34208 -15.31751 -15.03791 -14.59549 -14.49398 -14.29009 -13.58170 -13.43913 -13.03998 -12.64741 -12.28360 -12.13946 -11.89400 -11.68939 -11.55851 -11.31075 -11.19190 -10.99823 -10.90982 -10.80334 -10.74849 -10.28165 -9.67861 -9.15833 -9.08104 -8.86144 -8.57875 -7.84619 -6.17142 -4.23718 2.16603 3.20329 3.25377 3.31371 3.32524 3.62578 4.33175 4.72060 4.84069 5.02977 5.08128 5.14895 5.24336 5.46145 5.47778 5.62997 5.79886 5.82524 5.87155 5.88993 5.90693 5.92710 6.16395 6.19375 6.24855 6.28761 6.44880 6.57079 6.59892 6.78447 6.85163 6.90797 7.53452 7.79707 8.17553 8.55992 8.79604 8.80499 9.43107 10.92524 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.044743 B = 0.004849 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.647070 B = 5772.986045 C = 5897.818126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 C -0.121 4.121 4 C -0.070 4.070 5 C -0.097 4.097 6 H 0.086 0.914 7 C -0.137 4.137 8 C 0.534 3.466 9 O -0.564 6.564 10 N -0.643 5.643 11 C 0.104 3.896 12 C 0.035 3.965 13 C -0.520 4.520 14 H 0.063 0.937 15 C 0.069 3.931 16 N -0.884 5.884 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.094 3.906 22 H 0.095 0.905 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.265 0.735 36 H 0.075 0.925 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.910 8.487 2.241 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.117 4.117 3 C -0.178 4.178 4 C -0.108 4.108 5 C -0.118 4.118 6 H 0.105 0.895 7 C -0.194 4.194 8 C 0.324 3.676 9 O -0.444 6.444 10 N -0.376 5.376 11 C -0.018 4.018 12 C 0.016 3.984 13 C -0.558 4.558 14 H 0.081 0.919 15 C -0.135 4.135 16 N -0.521 5.521 17 Si 0.724 3.276 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.201 1.201 21 C -0.029 4.029 22 H 0.113 0.887 23 H 0.115 0.885 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.008 7.972 2.920 14.706 hybrid contribution 0.527 -0.355 -0.833 1.048 sum -11.481 7.617 2.086 13.935 Atomic orbital electron populations 1.23697 0.95134 1.01619 1.03237 1.21759 0.95459 0.95630 0.98888 1.20898 1.00244 0.94190 1.02450 1.20522 1.00635 0.94362 0.95231 1.21100 0.96843 0.96427 0.97460 0.89545 1.21714 0.95878 1.02190 0.99636 1.20083 0.78899 0.87998 0.80653 1.90630 1.69743 1.44014 1.39975 1.50077 1.30270 1.28042 1.29251 1.23551 0.84474 0.94924 0.98873 1.20345 0.89321 0.91815 0.96912 1.20852 1.01556 1.41648 0.91745 0.91879 1.25038 0.97201 0.95108 0.96169 1.69950 1.16703 1.42469 1.22967 0.86592 0.78992 0.78943 0.83113 1.20039 1.21212 1.20065 1.23403 0.96243 0.95578 0.87686 0.88712 0.88492 0.91378 0.92169 0.91540 0.90235 0.91035 0.91484 0.92416 0.92150 0.92325 0.91124 0.91414 0.92525 0.90715 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.02 12.68 29.02 0.37 -1.65 16 2 C -0.12 -1.32 4.80 -101.07 -0.48 -1.80 16 3 C -0.12 -1.18 10.12 36.00 0.36 -0.81 16 4 C -0.07 -0.96 4.46 -27.88 -0.12 -1.08 16 5 C -0.10 -1.45 2.61 -91.77 -0.24 -1.69 16 6 H 0.09 1.22 7.56 -51.93 -0.39 0.82 16 7 C -0.14 -1.77 8.63 37.16 0.32 -1.45 16 8 C 0.53 10.61 7.06 -10.98 -0.08 10.53 16 9 O -0.56 -13.08 17.17 5.55 0.10 -12.98 16 10 N -0.64 -13.31 3.69 -185.24 -0.68 -13.99 16 11 C 0.10 2.40 8.18 -8.51 -0.07 2.33 16 12 C 0.04 0.83 3.79 -91.26 -0.35 0.48 16 13 C -0.52 -13.20 8.82 -34.44 -0.30 -13.50 16 14 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 15 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 16 N -0.88 -24.56 13.26 55.43 0.74 -23.82 16 17 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.09 1.80 7.80 -8.52 -0.07 1.73 16 22 H 0.09 0.81 7.83 -52.48 -0.41 0.40 16 23 H 0.10 0.97 7.99 -52.49 -0.42 0.55 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.50 7.78 -51.93 -0.40 0.09 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.16 7.86 -51.93 -0.41 0.75 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 0.74 6.91 -51.93 -0.36 0.38 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 33 H 0.07 1.62 8.10 -51.92 -0.42 1.20 16 34 H 0.07 1.73 8.11 -51.93 -0.42 1.31 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 37 H 0.06 0.96 7.84 -51.93 -0.41 0.55 16 LS Contribution 312.44 15.07 4.71 4.71 Total: -1.00 -28.96 312.44 -7.07 -36.02 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.14 Total: 0.18 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -0.76 Total: -5.21 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.05 Total: -37.81 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.10 Total: -12.98 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.96 -7.07 -36.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.678 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds