Wall clock time and date at job start Mon Mar 30 2020 03:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00131 * 2 1 4 4 C 1.50702 * 119.99914 * 179.97438 * 2 1 3 5 5 C 1.52996 * 109.47010 * 95.00284 * 4 2 1 6 6 H 1.09002 * 109.46943 * 55.00222 * 5 4 2 7 7 C 1.53001 * 109.47211 * 294.99886 * 5 4 2 8 8 C 1.50702 * 109.47054 * 174.99697 * 5 4 2 9 9 O 1.21283 * 119.99718 * 35.77121 * 8 5 4 10 10 N 1.34776 * 120.00143 * 215.76252 * 8 5 4 11 11 C 1.47063 * 136.05474 * 176.40760 * 10 8 5 12 12 C 1.53503 * 87.98522 * 207.38329 * 11 10 8 13 13 C 1.50697 * 114.20896 * 220.34736 * 12 11 10 14 14 H 1.07999 * 119.99973 * 93.59549 * 13 12 11 15 15 C 1.37874 * 120.00054 * 273.60401 * 13 12 11 16 16 N 1.31519 * 120.00178 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00266 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47383 * 59.99161 * 17 15 13 19 19 H 1.48497 * 109.47635 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47024 * 299.99648 * 17 15 13 21 21 C 1.47061 * 136.05853 * 356.78904 * 10 8 5 22 22 H 1.08004 * 119.99947 * 0.02562 * 1 2 3 23 23 H 1.07998 * 120.00028 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47527 * 239.99583 * 3 2 1 25 25 H 1.09005 * 109.47182 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.47328 * 119.99680 * 3 2 1 27 27 H 1.09001 * 109.47145 * 335.00164 * 4 2 1 28 28 H 1.09006 * 109.47057 * 215.00118 * 4 2 1 29 29 H 1.08998 * 109.46640 * 66.11755 * 7 5 4 30 30 H 1.08993 * 109.47165 * 186.11558 * 7 5 4 31 31 H 1.08998 * 109.46747 * 306.11514 * 7 5 4 32 32 H 1.08994 * 113.47435 * 322.16669 * 11 10 8 33 33 H 1.09009 * 113.46698 * 92.60789 * 11 10 8 34 34 H 1.08997 * 114.20100 * 87.52083 * 12 11 10 35 35 H 0.96996 * 120.00347 * 180.02562 * 16 15 13 36 36 H 1.09003 * 113.46901 * 267.39733 * 21 10 8 37 37 H 1.09006 * 113.46713 * 37.83458 * 21 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4362 6 1 2.9771 -0.8655 -1.9001 7 6 1.1488 -1.9557 -2.2316 8 6 3.2853 -2.9234 -1.4267 9 8 3.0833 -3.7946 -0.6074 10 7 4.2770 -3.0634 -2.3286 11 6 5.3337 -4.0507 -2.5958 12 6 6.1614 -2.9165 -3.2163 13 6 6.9063 -3.3077 -4.4665 14 1 6.4602 -3.1403 -5.4357 15 6 8.1574 -3.8796 -4.3730 16 7 8.7009 -4.0832 -3.1928 17 14 9.0812 -4.3639 -5.9226 18 1 9.2987 -3.1610 -6.7658 19 1 10.3935 -4.9527 -5.5532 20 1 8.2861 -5.3628 -6.6812 21 6 4.7829 -2.2926 -3.4743 22 1 -0.5400 0.9353 -0.0004 23 1 -0.5400 -0.9353 0.0004 24 1 2.6902 1.3628 -0.8899 25 1 1.3552 2.1336 -0.0005 26 1 2.6901 1.3628 0.8900 27 1 1.4385 -2.0853 0.4352 28 1 2.9742 -1.1986 0.5900 29 1 0.5799 -1.0313 -2.3310 30 1 1.4092 -2.3303 -3.2214 31 1 0.5465 -2.6987 -1.7088 32 1 5.7774 -4.4673 -1.6917 33 1 5.0404 -4.8168 -3.3137 34 1 6.7737 -2.3674 -2.5011 35 1 9.5812 -4.4852 -3.1270 36 1 4.3429 -2.5904 -4.4261 37 1 4.7582 -1.2143 -3.3170 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598022182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:41 Heat of formation + Delta-G solvation = -19.611196 kcal Electronic energy + Delta-G solvation = -16787.649851 eV Core-core repulsion = 14144.315577 eV Total energy + Delta-G solvation = -2643.334274 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29989 -39.20610 -37.53208 -34.67257 -33.72238 -30.83666 -28.10511 -28.05500 -27.22709 -26.70689 -23.99698 -21.77435 -19.63715 -19.32233 -18.67515 -17.92124 -16.90057 -16.54630 -16.20431 -15.79249 -15.41653 -15.04071 -14.55114 -14.13704 -14.11575 -13.86720 -13.42141 -13.25870 -13.09900 -13.05179 -12.73416 -12.58632 -12.46838 -12.30323 -12.12885 -11.96466 -11.81869 -11.44721 -11.05110 -10.58072 -10.53035 -9.88882 -9.57491 -8.16702 -6.29133 1.31567 1.48968 1.49623 1.57410 1.63745 2.04312 2.46093 3.13421 3.46178 3.80824 3.98680 4.08723 4.19428 4.23375 4.31785 4.47229 4.58253 4.65989 4.72423 4.75154 4.80256 4.85777 4.88238 4.89532 4.99827 5.00863 5.07749 5.17164 5.19176 5.23443 5.57747 5.77209 5.80832 6.02748 6.22116 6.81649 6.94121 7.15966 7.41920 8.93387 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.044743 B = 0.004849 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.647070 B = 5772.986045 C = 5897.818126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.131 4.131 3 C -0.120 4.120 4 C -0.066 4.066 5 C -0.087 4.087 6 H 0.102 0.898 7 C -0.131 4.131 8 C 0.527 3.473 9 O -0.604 6.604 10 N -0.646 5.646 11 C 0.103 3.897 12 C 0.022 3.978 13 C -0.526 4.526 14 H 0.075 0.925 15 C 0.015 3.985 16 N -0.925 5.925 17 Si 0.962 3.038 18 H -0.264 1.264 19 H -0.291 1.291 20 H -0.269 1.269 21 C 0.114 3.886 22 H 0.117 0.883 23 H 0.096 0.904 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.093 0.907 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 10.304 0.693 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.131 4.131 3 C -0.177 4.177 4 C -0.104 4.104 5 C -0.108 4.108 6 H 0.120 0.880 7 C -0.188 4.188 8 C 0.319 3.681 9 O -0.487 6.487 10 N -0.379 5.379 11 C -0.020 4.020 12 C 0.003 3.997 13 C -0.564 4.564 14 H 0.093 0.907 15 C -0.185 4.185 16 N -0.563 5.563 17 Si 0.787 3.213 18 H -0.189 1.189 19 H -0.217 1.217 20 H -0.194 1.194 21 C -0.008 4.008 22 H 0.135 0.865 23 H 0.114 0.886 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.669 9.817 1.351 16.883 hybrid contribution 0.989 -0.945 -0.282 1.397 sum -12.679 8.872 1.070 15.512 Atomic orbital electron populations 1.23894 0.94698 1.02658 1.00892 1.21654 0.95791 0.94777 1.00918 1.20912 1.00542 0.93867 1.02356 1.20450 1.00145 0.95730 0.94092 1.21147 0.96878 0.93875 0.98900 0.87962 1.21710 0.94762 1.03392 0.98947 1.21114 0.78585 0.89116 0.79298 1.90605 1.70841 1.45898 1.41330 1.50139 1.30157 1.27452 1.30107 1.23348 0.85825 0.95329 0.97498 1.20239 0.91033 0.92457 0.95957 1.21253 1.01710 1.40702 0.92740 0.90681 1.25876 0.98377 0.95280 0.98919 1.70094 1.17047 1.43953 1.25233 0.85550 0.77345 0.78908 0.79507 1.18856 1.21719 1.19371 1.23282 0.92720 0.97015 0.87781 0.86531 0.88578 0.91405 0.90333 0.91801 0.91609 0.92566 0.88766 0.92429 0.92796 0.95384 0.91162 0.94361 0.92800 0.88865 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 12.68 67.78 0.86 -2.27 16 2 C -0.13 -2.63 4.80 -16.48 -0.08 -2.71 16 3 C -0.12 -2.01 10.12 71.23 0.72 -1.29 16 4 C -0.07 -1.76 4.46 29.85 0.13 -1.63 16 5 C -0.09 -2.45 2.61 -11.54 -0.03 -2.48 16 6 H 0.10 2.58 7.56 -2.39 -0.02 2.56 16 7 C -0.13 -3.05 8.63 71.98 0.62 -2.43 16 8 C 0.53 20.86 7.06 87.66 0.62 21.48 16 9 O -0.60 -28.71 17.17 -3.04 -0.05 -28.76 16 10 N -0.65 -26.57 3.69 -858.35 -3.17 -29.74 16 11 C 0.10 4.91 8.18 83.18 0.68 5.59 16 12 C 0.02 1.06 3.79 -11.21 -0.04 1.02 16 13 C -0.53 -26.49 8.82 25.60 0.23 -26.26 16 14 H 0.08 3.53 7.81 -2.91 -0.02 3.50 16 15 C 0.02 0.80 5.46 84.65 0.46 1.26 16 16 N -0.93 -52.68 13.26 21.45 0.28 -52.39 16 17 Si 0.96 41.04 29.54 68.60 2.03 43.07 16 18 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 C 0.11 4.15 7.80 83.17 0.65 4.80 16 22 H 0.12 1.50 7.83 -2.91 -0.02 1.48 16 23 H 0.10 1.65 7.99 -2.91 -0.02 1.63 16 24 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 1.02 7.78 -2.38 -0.02 1.00 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.90 7.86 -2.39 -0.02 1.88 16 28 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.09 1.71 6.91 -2.39 -0.02 1.69 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 3.30 8.10 -2.38 -0.02 3.28 16 34 H 0.04 2.03 8.11 -2.39 -0.02 2.01 16 35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.09 3.12 8.10 -2.39 -0.02 3.10 16 37 H 0.09 2.69 7.84 -2.38 -0.02 2.67 16 Total: -1.00 -63.66 312.44 4.93 -58.73 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.02 Total: 14.00 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 4.82 Total: -4.91 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -2.88 Total: -82.13 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -63.66 4.93 -58.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598022182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.122 kcal (2) G-P(sol) polarization free energy of solvation -63.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds