Wall clock time and date at job start Mon Mar 30 2020 03:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01680 * 2 1 4 4 C 1.54274 * 110.03394 * 238.56224 * 2 1 3 5 5 C 1.54884 * 104.19349 * 217.10315 * 4 2 1 6 6 C 1.54884 * 102.75052 * 37.94246 * 5 4 2 7 7 H 1.09003 * 110.48805 * 80.73278 * 6 5 4 8 8 C 1.50700 * 110.60044 * 203.31849 * 6 5 4 9 9 O 1.21282 * 119.99820 * 114.83402 * 8 6 5 10 10 N 1.34774 * 120.00216 * 294.84299 * 8 6 5 11 11 C 1.47068 * 136.05653 * 359.62272 * 10 8 6 12 12 C 1.53759 * 87.88559 * 152.96330 * 11 10 8 13 13 C 1.50700 * 114.08315 * 139.77844 * 12 11 10 14 14 H 1.08001 * 120.00608 * 266.56416 * 13 12 11 15 15 C 1.37881 * 120.00012 * 86.56567 * 13 12 11 16 16 N 1.31515 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00149 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47135 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47096 * 119.99860 * 17 15 13 20 20 H 1.48501 * 109.46813 * 239.99837 * 17 15 13 21 21 C 1.47066 * 136.05546 * 179.97438 * 10 8 6 22 22 C 1.53875 * 110.03442 * 121.39232 * 2 1 3 23 23 H 1.09002 * 109.47153 * 298.60541 * 1 2 3 24 24 H 1.09001 * 109.46832 * 178.60732 * 1 2 3 25 25 H 1.09004 * 109.47261 * 58.60714 * 1 2 3 26 26 H 1.09002 * 110.48341 * 335.78333 * 4 2 1 27 27 H 1.08997 * 110.48562 * 98.42608 * 4 2 1 28 28 H 1.09001 * 110.75954 * 279.62316 * 5 4 2 29 29 H 1.09005 * 110.91237 * 156.32637 * 5 4 2 30 30 H 1.08991 * 113.46854 * 267.69311 * 11 10 8 31 31 H 1.08999 * 113.46389 * 38.14120 * 11 10 8 32 32 H 1.08994 * 114.39686 * 272.67407 * 12 11 10 33 33 H 0.96995 * 120.00129 * 180.02562 * 16 15 13 34 34 H 1.09001 * 113.47176 * 321.86427 * 21 10 8 35 35 H 1.09005 * 113.46989 * 92.25158 * 21 10 8 36 36 H 1.09004 * 110.03213 * 238.56758 * 22 2 1 37 37 H 1.09000 * 110.03418 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7560 -1.2366 5 6 3.3137 -1.5009 -0.7186 6 6 2.8875 -1.9403 0.7042 7 1 2.2772 -2.8423 0.6582 8 6 4.0973 -2.1675 1.5736 9 8 4.2956 -1.4550 2.5349 10 7 4.9588 -3.1623 1.2830 11 6 5.0629 -4.2054 0.2515 12 6 6.5863 -4.1777 0.4581 13 6 7.2349 -5.5378 0.4345 14 1 7.3936 -6.0766 1.3570 15 6 7.6257 -6.0945 -0.7648 16 7 7.4320 -5.4388 -1.8883 17 14 8.4303 -7.7802 -0.7941 18 1 8.5340 -8.3033 0.5919 19 1 7.6084 -8.7068 -1.6132 20 1 9.7886 -7.6701 -1.3840 21 6 6.2053 -3.6863 1.8613 22 6 2.0571 -0.7530 1.2340 23 1 -0.3633 0.4920 0.9022 24 1 -0.3633 -1.0274 -0.0250 25 1 -0.3634 0.5353 -0.8773 26 1 1.3143 -1.4666 -1.5961 27 1 2.3297 -0.0544 -2.0255 28 1 4.1710 -0.8292 -0.6749 29 1 3.5357 -2.3683 -1.3404 30 1 4.6027 -5.1499 0.5413 31 1 4.7515 -3.8700 -0.7378 32 1 7.1095 -3.4379 -0.1476 33 1 7.7066 -5.8305 -2.7320 34 1 6.8671 -2.9089 2.2434 35 1 6.0464 -4.4933 2.5766 36 1 2.6868 -0.0945 1.8325 37 1 1.2230 -1.1189 1.8327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598029759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:49 Heat of formation + Delta-G solvation = -26.345442 kcal Electronic energy + Delta-G solvation = -17036.712239 eV Core-core repulsion = 14393.085946 eV Total energy + Delta-G solvation = -2643.626293 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82741 -38.08700 -36.59484 -32.70818 -31.49844 -29.17751 -28.56877 -25.73532 -24.97942 -24.41642 -21.53610 -20.22687 -19.38682 -18.00124 -17.03032 -16.41340 -15.49306 -15.02045 -14.76383 -14.38758 -14.13593 -13.40565 -13.27125 -13.05238 -12.51072 -12.24954 -12.08516 -11.56203 -11.43054 -11.27565 -11.02718 -10.95299 -10.82716 -10.68466 -10.62841 -10.58834 -10.37129 -10.26541 -9.53837 -9.18922 -8.91886 -8.58931 -7.83017 -6.19403 -4.24693 3.21302 3.22107 3.31051 3.34548 3.63214 4.32643 4.63503 4.65530 4.82514 5.09774 5.22609 5.34940 5.37661 5.55422 5.59801 5.66410 5.71251 5.84818 5.96335 6.00318 6.08755 6.09731 6.13448 6.22178 6.28048 6.35091 6.44358 6.46986 6.51821 6.59195 6.73656 6.83382 7.55104 7.78719 8.17922 8.57432 8.79416 8.81970 9.42198 10.90409 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041220 B = 0.005415 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.112909 B = 5169.495733 C = 5631.160309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.070 0.930 4 C -0.118 4.118 5 C -0.112 4.112 6 C -0.106 4.106 7 H 0.093 0.907 8 C 0.537 3.463 9 O -0.568 6.568 10 N -0.642 5.642 11 C 0.098 3.902 12 C 0.035 3.965 13 C -0.517 4.517 14 H 0.064 0.936 15 C 0.069 3.931 16 N -0.886 5.886 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.098 3.902 22 C -0.107 4.107 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.263 0.737 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.578 6.155 0.129 12.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.089 0.911 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.127 4.127 7 H 0.111 0.889 8 C 0.327 3.673 9 O -0.449 6.449 10 N -0.375 5.375 11 C -0.025 4.025 12 C 0.016 3.984 13 C -0.555 4.555 14 H 0.082 0.918 15 C -0.135 4.135 16 N -0.523 5.523 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.024 4.024 22 C -0.145 4.145 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.599 6.684 0.483 12.540 hybrid contribution 0.320 -1.052 -0.146 1.109 sum -10.279 5.632 0.338 11.726 Atomic orbital electron populations 1.21884 0.95222 1.01669 1.01275 1.21769 0.95407 0.99523 0.94961 0.91110 1.22445 0.97163 0.98881 0.97066 1.22458 0.97932 1.00613 0.93961 1.22026 0.94876 1.00074 0.95721 0.88928 1.20039 0.82840 0.79760 0.84682 1.90602 1.75658 1.48075 1.30518 1.50000 1.25249 1.29793 1.32445 1.23679 1.01252 0.87844 0.89697 1.20388 0.90666 0.97537 0.89852 1.20963 1.40009 1.01220 0.93292 0.91813 1.25024 0.95041 0.97833 0.95589 1.69958 1.46587 1.37840 0.97891 0.86492 0.79148 0.83836 0.78299 1.19562 1.20899 1.20863 1.23327 0.83092 0.95954 1.00063 1.22156 0.98879 0.96290 0.97151 0.92861 0.92639 0.92937 0.91398 0.91599 0.91127 0.90435 0.90969 0.92046 0.91370 0.92699 0.92592 0.91020 0.89950 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.85 37.16 0.33 -1.04 16 2 C -0.10 -1.13 3.50 -89.50 -0.31 -1.44 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.12 -1.37 6.36 -25.07 -0.16 -1.53 16 5 C -0.11 -1.62 6.05 -24.74 -0.15 -1.77 16 6 C -0.11 -1.65 3.08 -90.11 -0.28 -1.93 16 7 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 8 C 0.54 10.74 7.38 -10.99 -0.08 10.65 16 9 O -0.57 -12.96 16.20 5.56 0.09 -12.87 16 10 N -0.64 -13.27 3.68 -185.04 -0.68 -13.95 16 11 C 0.10 2.05 7.85 -8.36 -0.07 1.98 16 12 C 0.03 0.82 3.80 -91.13 -0.35 0.47 16 13 C -0.52 -13.12 8.82 -34.44 -0.30 -13.43 16 14 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 15 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -23.92 13.26 55.43 0.74 -23.18 16 17 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.10 2.08 8.17 -8.51 -0.07 2.01 16 22 C -0.11 -1.49 5.84 -25.61 -0.15 -1.64 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 29 H 0.08 1.15 6.79 -51.93 -0.35 0.80 16 30 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 31 H 0.06 1.26 6.65 -51.93 -0.35 0.91 16 32 H 0.07 1.75 8.11 -51.93 -0.42 1.33 16 33 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 36 H 0.08 1.32 6.85 -51.93 -0.36 0.96 16 37 H 0.06 0.83 7.67 -51.93 -0.40 0.43 16 LS Contribution 300.39 15.07 4.53 4.53 Total: -1.00 -28.13 300.39 -8.08 -36.21 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -6.04 Total: 0.32 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.68 Total: -5.98 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.05 Total: -37.13 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.09 Total: -12.87 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.13 -8.08 -36.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598029759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.864 kcal (2) G-P(sol) polarization free energy of solvation -28.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds