Wall clock time and date at job start Mon Mar 30 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.01680 * 2 1 4 4 C 1.54274 * 110.03394 * 238.56224 * 2 1 3 5 5 C 1.54884 * 104.19349 * 217.10315 * 4 2 1 6 6 C 1.54884 * 102.75052 * 37.94246 * 5 4 2 7 7 H 1.09003 * 110.48805 * 80.73278 * 6 5 4 8 8 C 1.50700 * 110.60044 * 203.31849 * 6 5 4 9 9 O 1.21282 * 119.99820 * 114.83402 * 8 6 5 10 10 N 1.34774 * 120.00216 * 294.84299 * 8 6 5 11 11 C 1.47068 * 136.05653 * 359.62272 * 10 8 6 12 12 C 1.53759 * 87.88559 * 152.96330 * 11 10 8 13 13 C 1.50700 * 114.08315 * 139.77844 * 12 11 10 14 14 H 1.08001 * 120.00608 * 266.56416 * 13 12 11 15 15 C 1.37881 * 120.00012 * 86.56567 * 13 12 11 16 16 N 1.31515 * 119.99932 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00149 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47135 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47096 * 119.99860 * 17 15 13 20 20 H 1.48501 * 109.46813 * 239.99837 * 17 15 13 21 21 C 1.47066 * 136.05546 * 179.97438 * 10 8 6 22 22 C 1.53875 * 110.03442 * 121.39232 * 2 1 3 23 23 H 1.09002 * 109.47153 * 298.60541 * 1 2 3 24 24 H 1.09001 * 109.46832 * 178.60732 * 1 2 3 25 25 H 1.09004 * 109.47261 * 58.60714 * 1 2 3 26 26 H 1.09002 * 110.48341 * 335.78333 * 4 2 1 27 27 H 1.08997 * 110.48562 * 98.42608 * 4 2 1 28 28 H 1.09001 * 110.75954 * 279.62316 * 5 4 2 29 29 H 1.09005 * 110.91237 * 156.32637 * 5 4 2 30 30 H 1.08991 * 113.46854 * 267.69311 * 11 10 8 31 31 H 1.08999 * 113.46389 * 38.14120 * 11 10 8 32 32 H 1.08994 * 114.39686 * 272.67407 * 12 11 10 33 33 H 0.96995 * 120.00129 * 180.02562 * 16 15 13 34 34 H 1.09001 * 113.47176 * 321.86427 * 21 10 8 35 35 H 1.09005 * 113.46989 * 92.25158 * 21 10 8 36 36 H 1.09004 * 110.03213 * 238.56758 * 22 2 1 37 37 H 1.09000 * 110.03418 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7560 -1.2366 5 6 3.3137 -1.5009 -0.7186 6 6 2.8875 -1.9403 0.7042 7 1 2.2772 -2.8423 0.6582 8 6 4.0973 -2.1675 1.5736 9 8 4.2956 -1.4550 2.5349 10 7 4.9588 -3.1623 1.2830 11 6 5.0629 -4.2054 0.2515 12 6 6.5863 -4.1777 0.4581 13 6 7.2349 -5.5378 0.4345 14 1 7.3936 -6.0766 1.3570 15 6 7.6257 -6.0945 -0.7648 16 7 7.4320 -5.4388 -1.8883 17 14 8.4303 -7.7802 -0.7941 18 1 8.5340 -8.3033 0.5919 19 1 7.6084 -8.7068 -1.6132 20 1 9.7886 -7.6701 -1.3840 21 6 6.2053 -3.6863 1.8613 22 6 2.0571 -0.7530 1.2340 23 1 -0.3633 0.4920 0.9022 24 1 -0.3633 -1.0274 -0.0250 25 1 -0.3634 0.5353 -0.8773 26 1 1.3143 -1.4666 -1.5961 27 1 2.3297 -0.0544 -2.0255 28 1 4.1710 -0.8292 -0.6749 29 1 3.5357 -2.3683 -1.3404 30 1 4.6027 -5.1499 0.5413 31 1 4.7515 -3.8700 -0.7378 32 1 7.1095 -3.4379 -0.1476 33 1 7.7066 -5.8305 -2.7320 34 1 6.8671 -2.9089 2.2434 35 1 6.0464 -4.4933 2.5766 36 1 2.6868 -0.0945 1.8325 37 1 1.2230 -1.1189 1.8327 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598029759.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:48 Heat of formation + Delta-G solvation = -41.412585 kcal Electronic energy + Delta-G solvation = -17037.365599 eV Core-core repulsion = 14393.085946 eV Total energy + Delta-G solvation = -2644.279653 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.38952 -39.50526 -38.10873 -34.65331 -32.64606 -30.75312 -29.76752 -27.31714 -26.72839 -25.69400 -22.97575 -21.67773 -20.52900 -19.54827 -18.82283 -18.05324 -16.99457 -16.60866 -16.36824 -15.85145 -15.48250 -14.82432 -14.36078 -14.33682 -14.00648 -13.85081 -13.27792 -13.18486 -12.96711 -12.79904 -12.67327 -12.58677 -12.19627 -12.07684 -11.74837 -11.65149 -11.56675 -11.34256 -11.30513 -11.03323 -10.67441 -10.49871 -9.56084 -8.16522 -6.27576 1.46355 1.50057 1.60153 1.62082 2.02089 2.46716 3.13738 3.43220 3.55631 3.73114 4.02265 4.25932 4.33964 4.37354 4.39185 4.50128 4.52789 4.55007 4.67695 4.68591 4.73229 4.82583 4.88913 4.99158 4.99615 5.07662 5.15282 5.17250 5.28296 5.35323 5.39595 5.57200 5.59146 5.81470 6.23385 6.80926 6.91948 7.16719 7.42560 8.93702 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041220 B = 0.005415 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.112909 B = 5169.495733 C = 5631.160309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.103 4.103 7 H 0.109 0.891 8 C 0.531 3.469 9 O -0.599 6.599 10 N -0.644 5.644 11 C 0.115 3.885 12 C 0.023 3.977 13 C -0.529 4.529 14 H 0.065 0.935 15 C 0.023 3.977 16 N -0.917 5.917 17 Si 0.958 3.042 18 H -0.265 1.265 19 H -0.279 1.279 20 H -0.284 1.284 21 C 0.101 3.899 22 C -0.104 4.104 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.051 0.949 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.265 0.735 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.056 0.944 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.108 5.661 -0.283 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.090 0.910 4 C -0.147 4.147 5 C -0.150 4.150 6 C -0.124 4.124 7 H 0.127 0.873 8 C 0.323 3.677 9 O -0.482 6.482 10 N -0.376 5.376 11 C -0.008 4.008 12 C 0.004 3.996 13 C -0.567 4.567 14 H 0.083 0.917 15 C -0.177 4.177 16 N -0.555 5.555 17 Si 0.784 3.216 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.210 1.210 21 C -0.021 4.021 22 C -0.142 4.142 23 H 0.076 0.924 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.075 0.925 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.139 6.192 0.076 13.627 hybrid contribution 0.842 -0.847 0.027 1.195 sum -11.297 5.345 0.103 12.498 Atomic orbital electron populations 1.21854 0.93268 1.02299 1.02240 1.21748 0.96964 0.99091 0.93431 0.90988 1.22435 0.95811 0.99113 0.97327 1.22447 0.98862 1.00408 0.93266 1.22129 0.93152 1.01594 0.95481 0.87253 1.20882 0.83555 0.78617 0.84687 1.90583 1.76635 1.48893 1.32113 1.50035 1.25268 1.30074 1.32270 1.23420 0.99165 0.88213 0.89967 1.20263 0.92042 0.96316 0.90956 1.21234 1.40133 1.01854 0.93450 0.91651 1.25739 0.95590 1.01151 0.95239 1.70058 1.47691 1.39400 0.98396 0.85504 0.77974 0.79736 0.78423 1.18919 1.20447 1.20964 1.23233 0.83615 0.96186 0.99114 1.22158 0.98518 0.95349 0.98201 0.92425 0.92196 0.91503 0.89798 0.90325 0.93045 0.90916 0.90204 0.91707 0.94325 0.92606 0.92919 0.89925 0.92508 0.90555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 8.85 71.98 0.64 -1.57 16 2 C -0.09 -1.94 3.50 -10.07 -0.04 -1.97 16 3 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -2.26 6.36 31.67 0.20 -2.06 16 5 C -0.11 -3.12 6.05 31.88 0.19 -2.93 16 6 C -0.10 -3.10 3.08 -10.47 -0.03 -3.13 16 7 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 8 C 0.53 21.18 7.38 87.66 0.65 21.83 16 9 O -0.60 -27.66 16.20 -3.04 -0.05 -27.71 16 10 N -0.64 -26.60 3.68 -857.74 -3.15 -29.75 16 11 C 0.11 4.77 7.85 83.27 0.65 5.43 16 12 C 0.02 1.12 3.80 -11.12 -0.04 1.08 16 13 C -0.53 -26.83 8.82 25.60 0.23 -26.61 16 14 H 0.07 3.23 7.81 -2.91 -0.02 3.21 16 15 C 0.02 1.19 5.46 84.66 0.46 1.65 16 16 N -0.92 -49.74 13.26 21.45 0.28 -49.46 16 17 Si 0.96 40.55 29.54 68.60 2.03 42.57 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 19 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 C 0.10 4.33 8.17 83.18 0.68 5.01 16 22 C -0.10 -2.78 5.84 31.32 0.18 -2.59 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 25 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.08 1.50 7.84 -2.39 -0.02 1.49 16 27 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.61 8.05 -2.39 -0.02 1.59 16 29 H 0.07 2.09 6.79 -2.38 -0.02 2.07 16 30 H 0.08 3.21 8.10 -2.39 -0.02 3.20 16 31 H 0.06 2.64 6.65 -2.39 -0.02 2.63 16 32 H 0.04 2.05 8.11 -2.39 -0.02 2.03 16 33 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 34 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 3.35 8.10 -2.38 -0.02 3.33 16 36 H 0.06 1.81 6.85 -2.39 -0.02 1.80 16 37 H 0.08 1.83 7.67 -2.39 -0.02 1.81 16 Total: -1.00 -59.68 300.39 3.91 -55.77 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.03 Total: 14.44 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 3.77 Total: -5.87 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -2.87 Total: -79.21 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.05 Total: -27.71 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.57 kcal Total: -59.68 3.91 -55.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598029759.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.362 kcal (2) G-P(sol) polarization free energy of solvation -59.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds