Wall clock time and date at job start Mon Mar 30 2020 03:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50698 * 120.00254 * 2 1 4 4 C 1.52997 * 109.47141 * 124.99425 * 3 2 1 5 5 H 1.09004 * 110.88322 * 54.29989 * 4 3 2 6 6 C 1.55147 * 111.00931 * 290.41978 * 4 3 2 7 7 C 1.54321 * 102.94698 * 206.38658 * 6 4 3 8 8 N 1.47022 * 107.26741 * 22.18888 * 7 6 4 9 9 C 1.34777 * 125.65006 * 181.10815 * 8 7 6 10 10 O 1.21278 * 120.00413 * 174.64631 * 9 8 7 11 11 C 1.50710 * 119.99634 * 354.64385 * 9 8 7 12 12 H 1.09001 * 109.47193 * 334.22634 * 11 9 8 13 13 C 1.53001 * 109.47116 * 214.22701 * 11 9 8 14 14 C 1.50702 * 109.46907 * 94.22706 * 11 9 8 15 15 H 1.07994 * 119.99978 * 359.97438 * 14 11 9 16 16 C 1.37875 * 119.99839 * 179.97438 * 14 11 9 17 17 N 1.31514 * 119.99980 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00178 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47248 * 89.99908 * 18 16 14 20 20 H 1.48504 * 109.47336 * 210.00705 * 18 16 14 21 21 H 1.48501 * 109.47060 * 330.00173 * 18 16 14 22 22 C 1.47423 * 108.70477 * 1.06306 * 8 7 6 23 23 H 1.07988 * 120.00418 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99479 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99427 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46933 * 4.99598 * 3 2 1 27 27 H 1.09001 * 109.46884 * 245.00158 * 3 2 1 28 28 H 1.09007 * 110.72149 * 324.74817 * 6 4 3 29 29 H 1.09001 * 110.72093 * 88.01733 * 6 4 3 30 30 H 1.08991 * 109.88659 * 141.60683 * 7 6 4 31 31 H 1.09005 * 109.88233 * 262.77740 * 7 6 4 32 32 H 1.09003 * 109.46874 * 303.46069 * 13 11 9 33 33 H 1.09002 * 109.46973 * 63.45767 * 13 11 9 34 34 H 1.09000 * 109.47454 * 183.46227 * 13 11 9 35 35 H 0.97004 * 120.00114 * 179.97438 * 17 16 14 36 36 H 1.08997 * 110.36841 * 217.03000 * 22 8 7 37 37 H 1.09003 * 110.36821 * 94.71183 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 1 3.6867 0.4593 1.1698 6 6 2.2707 1.4384 2.5277 7 6 3.2978 2.1200 3.4561 8 7 4.2580 2.8296 2.5983 9 6 5.3241 3.5336 3.0277 10 8 6.1063 3.9990 2.2262 11 6 5.5441 3.7425 4.5039 12 1 4.5887 3.6846 5.0254 13 6 6.1694 5.1194 4.7365 14 6 6.4691 2.6754 5.0299 15 1 6.8583 1.9211 4.3622 16 6 6.8184 2.6620 6.3636 17 7 6.3439 3.5803 7.1768 18 14 7.9655 1.3397 7.0155 19 1 9.3710 1.8067 6.9080 20 1 7.6434 1.0625 8.4385 21 1 7.7939 0.0986 6.2184 22 6 3.8624 2.6427 1.1905 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5399 0.9354 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3587 2.1316 0.0895 27 1 2.6214 1.4025 -0.9314 28 1 1.3799 2.0570 2.4180 29 1 2.0102 0.4482 2.9017 30 1 2.7920 2.8288 4.1116 31 1 3.8169 1.3678 4.0503 32 1 7.0945 5.1995 4.1656 33 1 5.4741 5.8937 4.4122 34 1 6.3851 5.2460 5.7974 35 1 6.5894 3.5707 8.1152 36 1 4.7447 2.5383 0.5591 37 1 3.2509 3.4799 0.8539 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600213883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:24 Heat of formation + Delta-G solvation = -32.689649 kcal Electronic energy + Delta-G solvation = -17026.849423 eV Core-core repulsion = 14382.948025 eV Total energy + Delta-G solvation = -2643.901398 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42924 -37.32955 -34.78596 -33.74292 -31.27540 -30.18442 -29.12547 -26.15423 -25.13598 -23.11830 -21.57136 -20.24271 -19.94514 -18.25871 -16.59813 -16.21172 -15.67367 -15.07651 -14.73680 -14.32082 -13.79212 -13.44675 -13.37209 -12.78165 -12.63880 -12.23334 -11.89804 -11.68629 -11.49554 -11.33060 -11.00956 -10.98078 -10.78170 -10.62934 -10.49823 -10.42171 -10.21333 -10.10404 -9.42821 -9.01793 -8.61497 -8.34746 -7.91779 -6.08522 -4.16220 2.15449 3.28190 3.34356 3.37097 3.74676 3.81975 4.41076 4.55847 4.73103 4.84660 5.11871 5.15569 5.22898 5.48477 5.51421 5.56259 5.67012 5.80000 5.86053 5.96728 5.98734 6.23983 6.27015 6.30602 6.45858 6.50078 6.64493 6.81595 7.01342 7.04705 7.16761 7.58872 7.77378 7.98154 8.21518 8.40234 8.83859 9.24486 9.48922 10.97383 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031121 B = 0.005936 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.484022 B = 4716.027374 C = 5148.991464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C -0.084 4.084 4 C -0.098 4.098 5 H 0.084 0.916 6 C -0.124 4.124 7 C 0.108 3.892 8 N -0.628 5.628 9 C 0.543 3.457 10 O -0.564 6.564 11 C 0.035 3.965 12 H 0.044 0.956 13 C -0.127 4.127 14 C -0.506 4.506 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.886 5.886 18 Si 0.899 3.101 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.109 3.891 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.038 0.962 33 H 0.008 0.992 34 H 0.090 0.910 35 H 0.263 0.737 36 H 0.071 0.929 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.286 -5.808 -9.378 15.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.163 4.163 3 C -0.121 4.121 4 C -0.117 4.117 5 H 0.102 0.898 6 C -0.162 4.162 7 C -0.015 4.015 8 N -0.363 5.363 9 C 0.336 3.664 10 O -0.442 6.442 11 C 0.014 3.986 12 H 0.062 0.938 13 C -0.185 4.185 14 C -0.544 4.544 15 H 0.075 0.925 16 C -0.136 4.136 17 N -0.525 5.525 18 Si 0.726 3.274 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.015 4.015 23 H 0.112 0.888 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.088 0.912 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.027 0.973 34 H 0.108 0.892 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.777 -5.435 -9.560 15.397 hybrid contribution 0.528 -0.788 0.424 1.039 sum -10.249 -6.223 -9.136 15.074 Atomic orbital electron populations 1.23809 0.95944 1.01644 1.02305 1.22945 0.95967 0.98489 0.98856 1.20705 0.97767 0.95505 0.98146 1.22338 0.96560 0.98400 0.94437 0.89756 1.22707 0.97700 1.01033 0.94786 1.21911 0.90066 0.96208 0.93340 1.48647 1.28131 1.53477 1.06094 1.21765 0.77042 0.74375 0.93252 1.90527 1.44365 1.51274 1.58025 1.18871 0.98483 0.96337 0.84915 0.93826 1.21650 0.98533 0.94298 1.04010 1.20750 1.28622 1.11194 0.93862 0.92507 1.24903 0.96030 0.96064 0.96617 1.69882 1.44265 1.33604 1.04709 0.86478 0.81111 0.81816 0.77949 1.20471 1.21066 1.19868 1.22105 0.98258 0.95780 0.85331 0.88757 0.88700 0.87473 0.91202 0.90693 0.91037 0.90438 0.91688 0.90676 0.94241 0.97264 0.89160 0.92717 0.91061 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.67 14.32 29.01 0.42 -1.26 16 2 C -0.14 -1.31 9.18 -36.03 -0.33 -1.64 16 3 C -0.08 -0.82 5.17 -27.89 -0.14 -0.96 16 4 C -0.10 -1.21 3.02 -88.48 -0.27 -1.47 16 5 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 6 C -0.12 -1.53 6.08 -24.90 -0.15 -1.68 16 7 C 0.11 1.80 6.17 -3.07 -0.02 1.78 16 8 N -0.63 -12.43 3.33 -170.52 -0.57 -13.00 16 9 C 0.54 13.30 6.78 -10.98 -0.07 13.23 16 10 O -0.56 -15.28 16.41 5.56 0.09 -15.19 16 11 C 0.03 0.91 2.25 -92.92 -0.21 0.70 16 12 H 0.04 1.14 6.99 -51.93 -0.36 0.78 16 13 C -0.13 -3.29 8.73 37.16 0.32 -2.97 16 14 C -0.51 -14.07 8.55 -34.44 -0.29 -14.36 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.89 -24.74 11.30 55.43 0.63 -24.11 16 18 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.11 1.73 6.40 -2.53 -0.02 1.71 16 23 H 0.09 0.69 8.06 -52.49 -0.42 0.27 16 24 H 0.09 0.75 7.84 -52.48 -0.41 0.34 16 25 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 26 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.80 7.97 -51.93 -0.41 0.39 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.07 7.72 -51.93 -0.40 0.67 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.04 1.04 7.73 -51.93 -0.40 0.64 16 33 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 2.46 5.98 -51.93 -0.31 2.15 16 35 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.07 1.21 7.99 -51.93 -0.41 0.80 16 37 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 LS Contribution 304.68 15.07 4.59 4.59 Total: -1.00 -30.83 304.68 -7.17 -38.01 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.03 Total: -1.22 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -0.86 Total: -5.22 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.06 Total: -37.11 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.09 Total: -15.19 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.83 -7.17 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600213883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.317 kcal (2) G-P(sol) polarization free energy of solvation -30.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds