Wall clock time and date at job start Mon Mar 30 2020 03:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50698 * 120.00254 * 2 1 4 4 C 1.52997 * 109.47141 * 124.99425 * 3 2 1 5 5 H 1.09004 * 110.88322 * 54.29989 * 4 3 2 6 6 C 1.55147 * 111.00931 * 290.41978 * 4 3 2 7 7 C 1.54321 * 102.94698 * 206.38658 * 6 4 3 8 8 N 1.47022 * 107.26741 * 22.18888 * 7 6 4 9 9 C 1.34777 * 125.65006 * 181.10815 * 8 7 6 10 10 O 1.21278 * 120.00413 * 174.64631 * 9 8 7 11 11 C 1.50710 * 119.99634 * 354.64385 * 9 8 7 12 12 H 1.09001 * 109.47193 * 334.22634 * 11 9 8 13 13 C 1.53001 * 109.47116 * 214.22701 * 11 9 8 14 14 C 1.50702 * 109.46907 * 94.22706 * 11 9 8 15 15 H 1.07994 * 119.99978 * 359.97438 * 14 11 9 16 16 C 1.37875 * 119.99839 * 179.97438 * 14 11 9 17 17 N 1.31514 * 119.99980 * 0.02562 * 16 14 11 18 18 Si 1.86799 * 120.00178 * 180.02562 * 16 14 11 19 19 H 1.48498 * 109.47248 * 89.99908 * 18 16 14 20 20 H 1.48504 * 109.47336 * 210.00705 * 18 16 14 21 21 H 1.48501 * 109.47060 * 330.00173 * 18 16 14 22 22 C 1.47423 * 108.70477 * 1.06306 * 8 7 6 23 23 H 1.07988 * 120.00418 * 180.02562 * 1 2 3 24 24 H 1.08005 * 119.99479 * 0.02562 * 1 2 3 25 25 H 1.07995 * 119.99427 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.46933 * 4.99598 * 3 2 1 27 27 H 1.09001 * 109.46884 * 245.00158 * 3 2 1 28 28 H 1.09007 * 110.72149 * 324.74817 * 6 4 3 29 29 H 1.09001 * 110.72093 * 88.01733 * 6 4 3 30 30 H 1.08991 * 109.88659 * 141.60683 * 7 6 4 31 31 H 1.09005 * 109.88233 * 262.77740 * 7 6 4 32 32 H 1.09003 * 109.46874 * 303.46069 * 13 11 9 33 33 H 1.09002 * 109.46973 * 63.45767 * 13 11 9 34 34 H 1.09000 * 109.47454 * 183.46227 * 13 11 9 35 35 H 0.97004 * 120.00114 * 179.97438 * 17 16 14 36 36 H 1.08997 * 110.36841 * 217.03000 * 22 8 7 37 37 H 1.09003 * 110.36821 * 94.71183 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 1 3.6867 0.4593 1.1698 6 6 2.2707 1.4384 2.5277 7 6 3.2978 2.1200 3.4561 8 7 4.2580 2.8296 2.5983 9 6 5.3241 3.5336 3.0277 10 8 6.1063 3.9990 2.2262 11 6 5.5441 3.7425 4.5039 12 1 4.5887 3.6846 5.0254 13 6 6.1694 5.1194 4.7365 14 6 6.4691 2.6754 5.0299 15 1 6.8583 1.9211 4.3622 16 6 6.8184 2.6620 6.3636 17 7 6.3439 3.5803 7.1768 18 14 7.9655 1.3397 7.0155 19 1 9.3710 1.8067 6.9080 20 1 7.6434 1.0625 8.4385 21 1 7.7939 0.0986 6.2184 22 6 3.8624 2.6427 1.1905 23 1 -0.5400 -0.9352 0.0004 24 1 -0.5399 0.9354 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3587 2.1316 0.0895 27 1 2.6214 1.4025 -0.9314 28 1 1.3799 2.0570 2.4180 29 1 2.0102 0.4482 2.9017 30 1 2.7920 2.8288 4.1116 31 1 3.8169 1.3678 4.0503 32 1 7.0945 5.1995 4.1656 33 1 5.4741 5.8937 4.4122 34 1 6.3851 5.2460 5.7974 35 1 6.5894 3.5707 8.1152 36 1 4.7447 2.5383 0.5591 37 1 3.2509 3.4799 0.8539 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600213883.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:23 Heat of formation + Delta-G solvation = -50.446398 kcal Electronic energy + Delta-G solvation = -17027.619414 eV Core-core repulsion = 14382.948025 eV Total energy + Delta-G solvation = -2644.671389 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01198 -38.83599 -35.86630 -35.76176 -32.77761 -31.95579 -30.34497 -27.51443 -27.09287 -24.63652 -23.23259 -21.34010 -20.68458 -19.94088 -18.56405 -18.05383 -17.08421 -16.59624 -15.96763 -15.79299 -15.38963 -14.82396 -14.53691 -14.26945 -13.94245 -13.77551 -13.53028 -13.31686 -12.91783 -12.77377 -12.71606 -12.60735 -12.30676 -12.19066 -12.11850 -11.92506 -11.56704 -11.48669 -11.12905 -10.65239 -10.39021 -10.08739 -9.53717 -8.18732 -6.34533 1.40563 1.42506 1.50175 1.52142 1.85109 2.23534 2.43525 3.09653 3.49873 3.71536 3.84373 4.17963 4.32771 4.34750 4.43988 4.48546 4.64335 4.67881 4.70764 4.82694 4.88586 4.94409 4.99085 5.07221 5.12374 5.13674 5.19068 5.37975 5.41897 5.53828 5.69435 5.83730 5.86366 5.99178 6.12756 6.62466 6.68485 7.30329 7.40998 8.86730 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.031121 B = 0.005936 C = 0.005437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.484022 B = 4716.027374 C = 5148.991464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C -0.076 4.076 4 C -0.085 4.085 5 H 0.080 0.920 6 C -0.109 4.109 7 C 0.100 3.900 8 N -0.627 5.627 9 C 0.537 3.463 10 O -0.601 6.601 11 C 0.032 3.968 12 H 0.039 0.961 13 C -0.118 4.118 14 C -0.528 4.528 15 H 0.041 0.959 16 C 0.026 3.974 17 N -0.907 5.907 18 Si 0.961 3.039 19 H -0.278 1.278 20 H -0.272 1.272 21 H -0.270 1.270 22 C 0.101 3.899 23 H 0.104 0.896 24 H 0.100 0.900 25 H 0.110 0.890 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.022 0.978 33 H 0.025 0.975 34 H 0.076 0.924 35 H 0.268 0.732 36 H 0.055 0.945 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.871 -7.198 -9.759 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C -0.113 4.113 4 C -0.104 4.104 5 H 0.099 0.901 6 C -0.147 4.147 7 C -0.023 4.023 8 N -0.360 5.360 9 C 0.329 3.671 10 O -0.483 6.483 11 C 0.011 3.989 12 H 0.057 0.943 13 C -0.176 4.176 14 C -0.566 4.566 15 H 0.060 0.940 16 C -0.174 4.174 17 N -0.545 5.545 18 Si 0.786 3.214 19 H -0.204 1.204 20 H -0.197 1.197 21 H -0.195 1.195 22 C -0.021 4.021 23 H 0.123 0.877 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.041 0.959 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.414 -6.849 -9.948 17.320 hybrid contribution 0.956 -0.340 0.536 1.147 sum -11.458 -7.189 -9.411 16.479 Atomic orbital electron populations 1.23984 0.95755 1.02485 1.00699 1.22912 0.96241 0.98119 1.00265 1.20635 0.97296 0.96452 0.96937 1.22271 0.96476 0.95914 0.95755 0.90131 1.22688 0.96762 1.01898 0.93327 1.22135 0.90283 0.95793 0.94055 1.48621 1.27010 1.51729 1.08642 1.21395 0.78131 0.75192 0.92408 1.90491 1.46074 1.53257 1.58453 1.18795 0.97849 0.95852 0.86366 0.94333 1.21510 0.98214 0.95202 1.02660 1.20856 1.29730 1.11684 0.94318 0.94029 1.25621 0.97193 0.98037 0.96553 1.69962 1.44789 1.34618 1.05087 0.85511 0.78867 0.79222 0.77806 1.20407 1.19690 1.19484 1.22398 0.98485 0.98582 0.82640 0.87735 0.88129 0.87170 0.90353 0.90206 0.89017 0.88424 0.91706 0.92422 0.95858 0.95637 0.90568 0.92258 0.92608 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.56 14.32 67.77 0.97 -1.59 16 2 C -0.16 -2.36 9.18 25.64 0.24 -2.12 16 3 C -0.08 -1.26 5.17 29.85 0.15 -1.10 16 4 C -0.09 -1.91 3.02 -9.41 -0.03 -1.94 16 5 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 6 C -0.11 -2.40 6.08 31.78 0.19 -2.20 16 7 C 0.10 3.25 6.17 86.73 0.54 3.79 16 8 N -0.63 -24.86 3.33 -811.80 -2.70 -27.56 16 9 C 0.54 26.91 6.78 87.66 0.59 27.51 16 10 O -0.60 -33.51 16.41 -3.02 -0.05 -33.56 16 11 C 0.03 1.73 2.25 -12.28 -0.03 1.70 16 12 H 0.04 2.06 6.99 -2.39 -0.02 2.04 16 13 C -0.12 -6.26 8.73 71.98 0.63 -5.63 16 14 C -0.53 -29.95 8.55 25.60 0.22 -29.73 16 15 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 16 C 0.03 1.45 5.30 84.65 0.45 1.89 16 17 N -0.91 -50.75 11.30 21.45 0.24 -50.51 16 18 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 C 0.10 3.13 6.40 86.85 0.56 3.69 16 23 H 0.10 1.18 8.06 -2.92 -0.02 1.16 16 24 H 0.10 1.23 7.84 -2.91 -0.02 1.20 16 25 H 0.11 1.59 8.06 -2.91 -0.02 1.56 16 26 H 0.08 1.19 7.70 -2.38 -0.02 1.17 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.09 1.70 7.97 -2.38 -0.02 1.68 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 2.11 7.72 -2.39 -0.02 2.09 16 31 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.02 1.25 7.73 -2.39 -0.02 1.23 16 33 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.08 4.24 5.98 -2.39 -0.01 4.22 16 35 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 36 H 0.06 1.90 7.99 -2.39 -0.02 1.88 16 37 H 0.07 2.05 8.04 -2.39 -0.02 2.03 16 Total: -1.00 -66.78 304.68 5.01 -61.76 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.02 Total: 10.26 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 4.48 Total: -5.74 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -2.46 Total: -78.07 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.05 Total: -33.56 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -66.78 5.01 -61.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600213883.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.316 kcal (2) G-P(sol) polarization free energy of solvation -66.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds