Wall clock time and date at job start Mon Mar 30 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50690 * 109.47465 * 120.00537 * 2 1 3 5 5 H 1.08002 * 120.00210 * 120.00005 * 4 2 1 6 6 C 1.37878 * 119.99820 * 300.00009 * 4 2 1 7 7 N 1.31520 * 119.99971 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00179 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46867 * 90.00012 * 8 6 4 10 10 H 1.48499 * 109.47206 * 210.00316 * 8 6 4 11 11 H 1.48503 * 109.46903 * 330.00345 * 8 6 4 12 12 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 13 13 O 1.21281 * 119.99699 * 239.99570 * 12 2 1 14 14 N 1.34773 * 120.00080 * 60.00061 * 12 2 1 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.04966 * 325.42323 * 15 14 12 17 17 C 1.54384 * 110.07046 * 86.90751 * 15 14 12 18 18 C 1.55011 * 104.17979 * 142.76625 * 17 15 14 19 19 C 1.54993 * 102.84984 * 322.33369 * 18 17 15 20 20 C 1.53483 * 110.06951 * 203.93614 * 15 14 12 21 21 C 1.52568 * 121.05427 * 96.53167 * 20 15 14 22 22 C 1.52548 * 121.08149 * 24.81997 * 20 15 14 23 23 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 25 25 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 26 26 H 0.97005 * 120.00148 * 179.97438 * 7 6 4 27 27 H 0.97005 * 120.00161 * 359.72088 * 14 12 2 28 28 H 1.09005 * 110.48137 * 261.48214 * 17 15 14 29 29 H 1.09000 * 110.48158 * 24.11657 * 17 15 14 30 30 H 1.09002 * 110.75420 * 203.97757 * 18 17 15 31 31 H 1.08998 * 110.86392 * 80.73676 * 18 17 15 32 32 H 1.09000 * 110.51436 * 278.89661 * 19 18 17 33 33 H 1.09005 * 110.51018 * 156.18274 * 19 18 17 34 34 H 1.09003 * 117.51248 * 356.97876 * 21 20 15 35 35 H 1.09004 * 117.51193 * 142.06418 * 21 20 15 36 36 H 1.09002 * 117.50880 * 217.88720 * 22 20 15 37 37 H 1.08996 * 117.51355 * 2.93546 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6534 -1.5885 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 2.1374 -0.8598 3.5564 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9774 1.9951 3.9071 11 1 0.8492 2.1772 1.4923 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1194 14 7 1.7067 -0.2497 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 1 3.1908 -1.3438 -3.4695 17 6 1.2251 -2.0781 -4.0381 18 6 1.2174 -2.0593 -5.5881 19 6 1.2844 -0.5456 -5.9148 20 6 2.2267 0.0272 -4.8417 21 6 3.5124 0.7480 -5.2355 22 6 2.3462 1.5331 -4.6296 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 1.9034 -0.5283 4.4375 27 1 1.1457 0.5366 -2.5436 28 1 1.5937 -3.0354 -3.6693 29 1 0.2268 -1.8772 -3.6495 30 1 0.2975 -2.4975 -5.9752 31 1 2.0885 -2.5791 -5.9870 32 1 0.2957 -0.0936 -5.8354 33 1 1.6987 -0.3878 -6.9106 34 1 4.3908 0.5886 -4.6102 35 1 3.7099 0.8804 -6.2993 36 1 1.7766 2.1820 -5.2949 37 1 2.4569 1.8902 -3.6058 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601706113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:38 Heat of formation + Delta-G solvation = -22.093053 kcal Electronic energy + Delta-G solvation = -17329.127431 eV Core-core repulsion = 14685.685536 eV Total energy + Delta-G solvation = -2643.441895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90791 -38.08670 -34.27753 -33.76909 -33.05612 -31.13138 -27.59658 -25.45956 -25.10551 -22.82335 -22.42737 -20.77164 -19.31531 -18.83485 -16.74687 -16.22647 -15.77881 -15.15011 -14.93445 -14.65651 -14.10533 -13.69490 -13.12408 -12.82785 -12.67108 -12.56902 -12.28375 -11.84703 -11.57717 -11.40616 -11.11193 -11.00924 -10.89235 -10.59852 -10.56080 -10.31338 -10.26466 -9.87884 -9.61270 -9.07055 -8.63699 -8.54387 -8.45101 -6.02712 -4.02592 3.24663 3.32128 3.37650 3.52055 3.63176 4.02585 4.34096 4.39806 4.59693 4.79248 4.87646 5.17355 5.21387 5.27031 5.53408 5.58203 5.60127 5.67383 5.76772 5.79938 5.89652 5.91837 5.99583 6.08339 6.13029 6.14478 6.27148 6.33797 6.40400 6.49968 6.75896 7.09377 7.19292 7.58406 8.20476 8.59164 9.14042 9.20326 9.56650 11.10341 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037478 B = 0.006360 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.925243 B = 4401.574977 C = 4589.224412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.005 4.005 3 H 0.050 0.950 4 C -0.504 4.504 5 H 0.093 0.907 6 C 0.069 3.931 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.528 3.472 13 O -0.532 6.532 14 N -0.740 5.740 15 C 0.176 3.824 16 H 0.087 0.913 17 C -0.132 4.132 18 C -0.121 4.121 19 C -0.085 4.085 20 C -0.141 4.141 21 C -0.163 4.163 22 C -0.169 4.169 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.032 0.968 26 H 0.264 0.736 27 H 0.394 0.606 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 4.447 -19.170 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.068 0.932 4 C -0.542 4.542 5 H 0.111 0.889 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.206 1.206 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.316 3.684 13 O -0.406 6.406 14 N -0.394 5.394 15 C 0.071 3.929 16 H 0.105 0.895 17 C -0.171 4.171 18 C -0.159 4.159 19 C -0.123 4.123 20 C -0.141 4.141 21 C -0.200 4.200 22 C -0.206 4.206 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.228 0.772 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.910 3.701 -18.847 19.426 hybrid contribution -0.910 1.245 0.226 1.558 sum -3.820 4.946 -18.621 19.642 Atomic orbital electron populations 1.22107 0.97400 1.01460 0.99145 1.19308 0.93156 0.97486 0.92753 0.93195 1.20953 1.31959 1.14057 0.87255 0.88898 1.24991 0.95866 0.96571 0.95781 1.69890 1.45579 1.40194 0.97840 0.86908 0.80695 0.83867 0.77022 1.20568 1.22341 1.19293 1.21263 0.78821 0.84292 0.84024 1.90573 1.37285 1.26270 1.86503 1.46373 1.54990 1.32696 1.05339 1.20876 0.98549 0.90621 0.82845 0.89465 1.22795 1.00120 0.99198 0.94981 1.22452 1.01673 0.95715 0.96042 1.21851 0.98283 0.95559 0.96597 1.22022 1.00273 0.93703 0.98145 1.22957 0.92274 1.03608 1.01146 1.22907 1.02219 0.92881 1.02562 0.92400 0.93363 0.94881 0.92611 0.77167 0.91000 0.91074 0.91512 0.91379 0.91201 0.91711 0.88620 0.88788 0.88755 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.57 37.16 0.32 -2.67 16 2 C -0.01 -0.13 2.23 -92.92 -0.21 -0.33 16 3 H 0.05 1.15 7.20 -51.93 -0.37 0.78 16 4 C -0.50 -14.77 8.96 -34.44 -0.31 -15.08 16 5 H 0.09 3.10 7.00 -52.49 -0.37 2.74 16 6 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 7 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 8 Si 0.88 21.56 24.37 -169.99 -4.14 17.41 16 9 H -0.28 -6.58 6.87 56.52 0.39 -6.19 16 10 H -0.30 -7.26 7.11 56.52 0.40 -6.85 16 11 H -0.27 -6.06 6.53 56.52 0.37 -5.70 16 12 C 0.53 11.67 7.14 -10.98 -0.08 11.59 16 13 O -0.53 -13.90 15.13 5.56 0.08 -13.81 16 14 N -0.74 -12.31 4.47 -52.85 -0.24 -12.54 16 15 C 0.18 2.59 3.08 -66.95 -0.21 2.39 16 16 H 0.09 1.49 7.60 -51.93 -0.39 1.09 16 17 C -0.13 -1.78 6.55 -24.94 -0.16 -1.94 16 18 C -0.12 -1.24 6.91 -24.62 -0.17 -1.41 16 19 C -0.09 -0.82 6.58 -25.23 -0.17 -0.99 16 20 C -0.14 -1.60 2.31 -154.26 -0.36 -1.96 16 21 C -0.16 -1.71 10.23 -26.91 -0.28 -1.99 16 22 C -0.17 -1.77 9.48 -26.92 -0.26 -2.03 16 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 25 H 0.03 0.54 7.56 -51.93 -0.39 0.15 16 26 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 27 H 0.39 5.63 7.07 -40.82 -0.29 5.35 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 34 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.10 1.15 7.37 -51.93 -0.38 0.76 16 LS Contribution 292.60 15.07 4.41 4.41 Total: -1.00 -32.83 292.60 -6.85 -39.68 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.77 Total: 4.59 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.96 Total: -12.49 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.54 Total: -39.78 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.81 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.83 -6.85 -39.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601706113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.582 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds