Wall clock time and date at job start Mon Mar 30 2020 03:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47214 * 2 1 4 4 C 1.50690 * 109.47465 * 120.00537 * 2 1 3 5 5 H 1.08002 * 120.00210 * 120.00005 * 4 2 1 6 6 C 1.37878 * 119.99820 * 300.00009 * 4 2 1 7 7 N 1.31520 * 119.99971 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00179 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46867 * 90.00012 * 8 6 4 10 10 H 1.48499 * 109.47206 * 210.00316 * 8 6 4 11 11 H 1.48503 * 109.46903 * 330.00345 * 8 6 4 12 12 C 1.50706 * 109.46763 * 240.00605 * 2 1 3 13 13 O 1.21281 * 119.99699 * 239.99570 * 12 2 1 14 14 N 1.34773 * 120.00080 * 60.00061 * 12 2 1 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.04966 * 325.42323 * 15 14 12 17 17 C 1.54384 * 110.07046 * 86.90751 * 15 14 12 18 18 C 1.55011 * 104.17979 * 142.76625 * 17 15 14 19 19 C 1.54993 * 102.84984 * 322.33369 * 18 17 15 20 20 C 1.53483 * 110.06951 * 203.93614 * 15 14 12 21 21 C 1.52568 * 121.05427 * 96.53167 * 20 15 14 22 22 C 1.52548 * 121.08149 * 24.81997 * 20 15 14 23 23 H 1.08995 * 109.46910 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46848 * 299.99518 * 1 2 3 25 25 H 1.09000 * 109.47019 * 59.99173 * 1 2 3 26 26 H 0.97005 * 120.00148 * 179.97438 * 7 6 4 27 27 H 0.97005 * 120.00161 * 359.72088 * 14 12 2 28 28 H 1.09005 * 110.48137 * 261.48214 * 17 15 14 29 29 H 1.09000 * 110.48158 * 24.11657 * 17 15 14 30 30 H 1.09002 * 110.75420 * 203.97757 * 18 17 15 31 31 H 1.08998 * 110.86392 * 80.73676 * 18 17 15 32 32 H 1.09000 * 110.51436 * 278.89661 * 19 18 17 33 33 H 1.09005 * 110.51018 * 156.18274 * 19 18 17 34 34 H 1.09003 * 117.51248 * 356.97876 * 21 20 15 35 35 H 1.09004 * 117.51193 * 142.06418 * 21 20 15 36 36 H 1.09002 * 117.50880 * 217.88720 * 22 20 15 37 37 H 1.08996 * 117.51355 * 2.93546 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6534 -1.5885 1.1311 6 6 1.6994 -0.2395 2.4826 7 7 2.1374 -0.8598 3.5564 8 14 0.6260 1.2797 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9774 1.9951 3.9071 11 1 0.8492 2.1772 1.4923 12 6 2.0323 -0.7103 -1.2306 13 8 2.7296 -1.6964 -1.1194 14 7 1.7067 -0.2497 -2.4546 15 6 2.1945 -0.9406 -3.6509 16 1 3.1908 -1.3438 -3.4695 17 6 1.2251 -2.0781 -4.0381 18 6 1.2174 -2.0593 -5.5881 19 6 1.2844 -0.5456 -5.9148 20 6 2.2267 0.0272 -4.8417 21 6 3.5124 0.7480 -5.2355 22 6 2.3462 1.5331 -4.6296 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5140 -0.8899 26 1 1.9034 -0.5283 4.4375 27 1 1.1457 0.5366 -2.5436 28 1 1.5937 -3.0354 -3.6693 29 1 0.2268 -1.8772 -3.6495 30 1 0.2975 -2.4975 -5.9752 31 1 2.0885 -2.5791 -5.9870 32 1 0.2957 -0.0936 -5.8354 33 1 1.6987 -0.3878 -6.9106 34 1 4.3908 0.5886 -4.6102 35 1 3.7099 0.8804 -6.2993 36 1 1.7766 2.1820 -5.2949 37 1 2.4569 1.8902 -3.6058 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601706113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:37 Heat of formation + Delta-G solvation = -44.986516 kcal Electronic energy + Delta-G solvation = -17330.120167 eV Core-core repulsion = 14685.685536 eV Total energy + Delta-G solvation = -2644.434630 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.21214 -39.52813 -35.81535 -35.30505 -34.48191 -33.14375 -28.72208 -27.13055 -26.50457 -24.45780 -23.39008 -21.83287 -20.91079 -19.94833 -18.81956 -17.74932 -17.22876 -16.47819 -16.24344 -16.02743 -15.71191 -15.15335 -14.72349 -14.25787 -14.14417 -13.87780 -13.51413 -13.43778 -12.85631 -12.78824 -12.55238 -12.36804 -12.13241 -11.96618 -11.86628 -11.61823 -11.46805 -11.23278 -11.15386 -10.82737 -10.76239 -10.36812 -9.92793 -8.27959 -6.35986 1.32266 1.39132 1.50507 1.86452 2.29374 2.33991 2.93833 3.05464 3.41631 3.68508 3.90899 4.02173 4.11505 4.28274 4.30760 4.41207 4.50689 4.59953 4.68179 4.76255 4.79279 4.79924 4.91460 4.99252 5.03149 5.09299 5.13111 5.20236 5.28353 5.30585 5.42956 5.44533 5.52206 5.67541 6.26373 6.68624 6.86246 7.25606 7.52106 8.89951 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.037478 B = 0.006360 C = 0.006100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.925243 B = 4401.574977 C = 4589.224412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.009 4.009 3 H 0.068 0.932 4 C -0.522 4.522 5 H 0.027 0.973 6 C 0.005 3.995 7 N -0.954 5.954 8 Si 0.962 3.038 9 H -0.260 1.260 10 H -0.299 1.299 11 H -0.230 1.230 12 C 0.526 3.474 13 O -0.587 6.587 14 N -0.714 5.714 15 C 0.169 3.831 16 H 0.053 0.947 17 C -0.134 4.134 18 C -0.113 4.113 19 C -0.076 4.076 20 C -0.146 4.146 21 C -0.163 4.163 22 C -0.160 4.160 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.267 0.733 27 H 0.411 0.589 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.919 7.519 -22.161 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.030 4.030 3 H 0.085 0.915 4 C -0.560 4.560 5 H 0.045 0.955 6 C -0.192 4.192 7 N -0.594 5.594 8 Si 0.786 3.214 9 H -0.185 1.185 10 H -0.227 1.227 11 H -0.153 1.153 12 C 0.315 3.685 13 O -0.466 6.466 14 N -0.367 5.367 15 C 0.064 3.936 16 H 0.071 0.929 17 C -0.173 4.173 18 C -0.151 4.151 19 C -0.113 4.113 20 C -0.146 4.146 21 C -0.200 4.200 22 C -0.197 4.197 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.076 0.924 27 H 0.248 0.752 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.405 6.801 -21.911 23.571 hybrid contribution -0.016 0.175 1.153 1.166 sum -5.421 6.976 -20.759 22.561 Atomic orbital electron populations 1.22005 0.94383 1.01584 1.01548 1.19260 0.95475 0.97354 0.90928 0.91471 1.21105 1.31643 1.12818 0.90479 0.95468 1.26071 0.97495 1.00834 0.94754 1.70088 1.47699 1.42843 0.98731 0.85676 0.78738 0.78905 0.78064 1.18550 1.22667 1.15329 1.21091 0.78392 0.83613 0.85449 1.90562 1.39918 1.28751 1.87385 1.46076 1.53787 1.32575 1.04272 1.21041 0.97131 0.92196 0.83233 0.92924 1.22759 0.99284 0.97276 0.97969 1.22439 1.02799 0.97007 0.92849 1.21856 0.98481 0.94244 0.96754 1.21960 1.01823 0.93764 0.97089 1.23035 0.91444 1.03194 1.02340 1.22998 1.02011 0.92172 1.02539 0.93632 0.93537 0.89627 0.92388 0.75179 0.93632 0.91072 0.89609 0.91197 0.89857 0.89527 0.90479 0.86300 0.86043 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.33 8.57 71.98 0.62 -4.72 16 2 C -0.01 -0.40 2.23 -12.29 -0.03 -0.43 16 3 H 0.07 2.93 7.20 -2.39 -0.02 2.91 16 4 C -0.52 -31.99 8.96 25.60 0.23 -31.76 16 5 H 0.03 1.97 7.00 -2.91 -0.02 1.95 16 6 C 0.00 0.28 5.45 84.65 0.46 0.74 16 7 N -0.95 -62.22 13.96 21.45 0.30 -61.92 16 8 Si 0.96 43.61 24.37 68.60 1.67 45.29 16 9 H -0.26 -10.99 6.87 99.48 0.68 -10.30 16 10 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 11 H -0.23 -9.01 6.53 99.48 0.65 -8.36 16 12 C 0.53 23.74 7.14 87.66 0.63 24.36 16 13 O -0.59 -32.79 15.13 -3.03 -0.05 -32.84 16 14 N -0.71 -23.01 4.47 -439.52 -1.96 -24.97 16 15 C 0.17 4.90 3.08 45.62 0.14 5.04 16 16 H 0.05 1.90 7.60 -2.39 -0.02 1.88 16 17 C -0.13 -3.55 6.55 31.75 0.21 -3.34 16 18 C -0.11 -2.02 6.91 31.96 0.22 -1.80 16 19 C -0.08 -1.14 6.58 31.57 0.21 -0.93 16 20 C -0.15 -2.92 2.31 -52.02 -0.12 -3.04 16 21 C -0.16 -3.01 10.23 30.48 0.31 -2.70 16 22 C -0.16 -2.78 9.48 30.47 0.29 -2.49 16 23 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.05 1.82 3.27 -2.39 -0.01 1.82 16 25 H 0.09 2.40 7.56 -2.39 -0.02 2.39 16 26 H 0.27 16.11 8.31 -92.70 -0.77 15.34 16 27 H 0.41 10.44 7.07 -92.70 -0.66 9.78 16 28 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.07 1.87 8.05 -2.39 -0.02 1.85 16 30 H 0.09 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 1.00 8.11 -2.38 -0.02 0.98 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.09 1.74 7.37 -2.39 -0.02 1.72 16 Total: -1.00 -78.43 292.60 3.45 -74.99 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.32 Total: 20.51 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 3.16 Total: -21.06 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -1.67 Total: -86.89 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.05 Total: -32.84 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.67 Total: 45.29 kcal Total: -78.43 3.45 -74.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601706113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.000 kcal (2) G-P(sol) polarization free energy of solvation -78.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds