Wall clock time and date at job start Mon Mar 30 2020 04:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.45504 * 2 1 4 4 C 1.53036 * 109.46303 * 119.97938 * 2 1 3 5 5 C 1.53118 * 109.27871 * 179.19655 * 4 2 1 6 6 H 1.08998 * 109.52482 * 62.30993 * 5 4 2 7 7 N 1.46497 * 109.52201 * 182.44069 * 5 4 2 8 8 C 1.36934 * 120.00418 * 59.99693 * 7 5 4 9 9 H 1.07997 * 119.99809 * 343.28458 * 8 7 5 10 10 C 1.38809 * 120.00097 * 163.00188 * 8 7 5 11 11 N 1.31617 * 120.00533 * 337.91555 * 10 8 7 12 12 Si 1.86806 * 119.99730 * 157.90942 * 10 8 7 13 13 H 1.48495 * 109.46851 * 93.92329 * 12 10 8 14 14 H 1.48505 * 109.47029 * 213.92031 * 12 10 8 15 15 H 1.48497 * 109.47366 * 333.92160 * 12 10 8 16 16 C 1.46500 * 119.99804 * 239.99568 * 7 5 4 17 17 C 1.47206 * 109.47319 * 275.97982 * 16 7 5 18 18 N 6.46053 * 155.24934 * 108.85904 * 2 1 3 19 19 C 1.53122 * 109.15908 * 302.34243 * 5 4 2 20 20 C 1.53039 * 109.27778 * 57.65562 * 19 5 4 21 21 N 1.46847 * 109.52287 * 300.81738 * 20 19 5 22 22 H 1.08998 * 109.46960 * 300.02035 * 1 2 3 23 23 H 1.08997 * 109.47191 * 60.02188 * 1 2 3 24 24 H 1.09003 * 109.47145 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47499 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47398 * 299.97731 * 3 2 1 27 27 H 1.08998 * 109.46683 * 59.97897 * 3 2 1 28 28 H 1.09000 * 109.50356 * 59.25171 * 4 2 1 29 29 H 1.08998 * 109.53142 * 299.15268 * 4 2 1 30 30 H 0.97000 * 120.00332 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.47116 * 35.97586 * 16 7 5 32 32 H 1.08999 * 109.47406 * 155.97956 * 16 7 5 33 33 H 1.08998 * 109.50558 * 177.59985 * 19 5 4 34 34 H 1.09002 * 109.50688 * 297.71727 * 19 5 4 35 35 H 1.09005 * 109.46005 * 180.80731 * 20 19 5 36 36 H 1.08999 * 109.46366 * 60.83670 * 20 19 5 37 37 H 1.00899 * 111.00304 * 185.83428 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0396 1.4426 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5710 -0.7361 1.2355 6 1 3.9457 0.2869 1.2683 7 7 4.0642 -1.4758 2.3999 8 6 3.7227 -2.7908 2.5707 9 1 2.8933 -3.2092 2.0199 10 6 4.4463 -3.5876 3.4472 11 7 5.6760 -3.2543 3.7773 12 14 3.6745 -5.1329 4.1586 13 1 4.0406 -6.3010 3.3180 14 1 4.1724 -5.3431 5.5419 15 1 2.1973 -4.9830 4.1816 16 6 4.9228 -0.8086 3.3816 17 6 6.3194 -0.8456 2.9177 18 7 7.3971 -0.8743 2.5596 19 6 4.0548 -1.4188 -0.0469 20 6 3.4865 -0.6776 -1.2592 21 7 2.0193 -0.6917 -1.1995 22 1 -0.3633 0.5141 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 -0.3633 -1.0277 0.0005 25 1 3.1297 1.4430 0.0005 26 1 1.6765 1.9562 -0.8901 27 1 1.6758 1.9564 0.8898 28 1 1.6659 -1.7448 1.2574 29 1 1.6895 -0.1989 2.1402 30 1 6.1815 -3.8110 4.3902 31 1 4.6057 0.2279 3.4967 32 1 4.8448 -1.3211 4.3404 33 1 5.1439 -1.3948 -0.0833 34 1 3.7125 -2.4536 -0.0598 35 1 3.8175 -1.1698 -2.1737 36 1 3.8403 0.3534 -1.2532 37 1 1.6195 -0.2924 -2.0354 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691727888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:16 Heat of formation + Delta-G solvation = 46.357493 kcal Electronic energy + Delta-G solvation = -17848.774220 eV Core-core repulsion = 15240.593314 eV Total energy + Delta-G solvation = -2608.180906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.27980 -36.18690 -34.30267 -32.53767 -31.72632 -29.71602 -27.30219 -26.74107 -26.37755 -23.88014 -21.90040 -20.26807 -18.41194 -16.98815 -16.10398 -15.56296 -15.16813 -14.84799 -14.19246 -13.82839 -13.38858 -13.29433 -12.89265 -12.43791 -12.26027 -11.95235 -11.89716 -11.60851 -11.35228 -11.29263 -11.20049 -10.98179 -10.82342 -10.64200 -10.38467 -10.33381 -10.15405 -9.87380 -9.76149 -9.37320 -8.61160 -8.09401 -7.08845 -5.90681 -3.26734 3.36392 3.45137 3.46800 4.13510 4.40377 4.43972 4.53492 5.07200 5.14942 5.29565 5.31490 5.46812 5.60880 5.65958 5.70476 5.73455 5.90476 5.91190 6.01755 6.06613 6.13685 6.23306 6.29243 6.34651 6.49477 6.56713 6.73752 6.76667 7.04178 7.08151 7.18381 7.44855 7.70212 7.76034 8.21272 9.03561 9.22281 9.70064 10.14249 11.18253 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023632 B = 0.009145 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.532234 B = 3061.084941 C = 3689.511134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.108 3.892 3 C -0.181 4.181 4 C -0.107 4.107 5 C 0.174 3.826 6 H 0.051 0.949 7 N -0.579 5.579 8 C -0.253 4.253 9 H 0.082 0.918 10 C 0.001 3.999 11 N -0.903 5.903 12 Si 0.903 3.097 13 H -0.290 1.290 14 H -0.290 1.290 15 H -0.278 1.278 16 C 0.257 3.743 17 C 0.249 3.751 18 N -0.511 5.511 19 C -0.122 4.122 20 C 0.059 3.941 21 N -0.676 5.676 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.060 0.940 30 H 0.257 0.743 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.026 0.974 37 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.777 8.126 -5.494 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.017 3.983 3 C -0.240 4.240 4 C -0.146 4.146 5 C 0.067 3.933 6 H 0.069 0.931 7 N -0.299 5.299 8 C -0.382 4.382 9 H 0.099 0.901 10 C -0.197 4.197 11 N -0.548 5.548 12 Si 0.732 3.268 13 H -0.217 1.217 14 H -0.216 1.216 15 H -0.203 1.203 16 C 0.127 3.873 17 C -0.070 4.070 18 N -0.192 5.192 19 C -0.162 4.162 20 C -0.071 4.071 21 N -0.307 5.307 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.044 0.956 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.119 7.348 -5.594 12.296 hybrid contribution -0.342 -0.154 0.172 0.413 sum -8.461 7.193 -5.422 12.359 Atomic orbital electron populations 1.21807 0.94386 1.02249 1.00945 1.20981 0.94340 0.91050 0.91932 1.22586 1.02188 0.97838 1.01420 1.21971 0.97369 1.01111 0.94183 1.20478 0.92309 0.93820 0.86685 0.93071 1.44198 1.54533 1.09418 1.21730 1.19182 1.10425 0.85889 1.22669 0.90071 1.24857 0.94887 0.98141 1.01796 1.69929 1.07434 1.40115 1.37300 0.86270 0.79005 0.82939 0.78536 1.21711 1.21621 1.20314 1.18351 0.78563 0.95261 0.95115 1.30647 0.95596 0.88945 0.91763 1.80801 1.14151 1.13308 1.10988 1.21997 0.99368 1.01221 0.93614 1.21975 0.87411 0.98340 0.99383 1.60502 1.07520 1.58618 1.04036 0.92341 0.93483 0.91876 0.91896 0.93580 0.92192 0.90685 0.92126 0.93218 0.92667 0.86918 0.92603 0.90625 0.91803 0.95581 0.85247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.71 37.16 0.32 -1.25 16 2 C 0.11 1.45 0.95 -131.61 -0.12 1.33 16 3 C -0.18 -2.20 7.86 37.16 0.29 -1.91 16 4 C -0.11 -1.75 4.18 -26.65 -0.11 -1.87 16 5 C 0.17 3.24 2.38 -67.81 -0.16 3.07 16 6 H 0.05 0.91 6.29 -51.93 -0.33 0.58 16 7 N -0.58 -12.77 2.44 -168.83 -0.41 -13.18 16 8 C -0.25 -6.22 8.32 -15.06 -0.13 -6.35 16 9 H 0.08 2.01 6.85 -52.49 -0.36 1.65 16 10 C 0.00 0.03 4.85 -17.43 -0.08 -0.05 16 11 N -0.90 -24.69 9.51 55.49 0.53 -24.16 16 12 Si 0.90 20.80 29.61 -169.99 -5.03 15.77 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 16 C 0.26 5.49 5.35 -6.83 -0.04 5.45 16 17 C 0.25 5.99 13.70 -20.76 -0.28 5.71 16 18 N -0.51 -13.23 18.54 42.15 0.78 -12.45 16 19 C -0.12 -2.31 5.38 -26.65 -0.14 -2.45 16 20 C 0.06 0.87 6.25 -3.83 -0.02 0.85 16 21 N -0.68 -9.32 6.31 -99.99 -0.63 -9.95 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.06 0.83 4.80 -51.93 -0.25 0.58 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.06 0.97 8.05 -51.93 -0.42 0.55 16 32 H 0.11 2.58 6.41 -51.93 -0.33 2.25 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.08 1.60 7.54 -51.93 -0.39 1.21 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.37 6.19 -51.93 -0.32 0.05 16 37 H 0.33 3.85 8.79 -39.29 -0.35 3.50 16 LS Contribution 290.98 15.07 4.39 4.39 Total: -1.00 -28.46 290.98 -6.48 -34.95 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.62 Total: 2.10 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.48 Total: 2.54 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: 0.27 Total: -59.75 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.46 -6.48 -34.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691727888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.306 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds