Wall clock time and date at job start Mon Mar 30 2020 04:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.45504 * 2 1 4 4 C 1.53036 * 109.46303 * 119.97938 * 2 1 3 5 5 C 1.53118 * 109.27871 * 179.19655 * 4 2 1 6 6 H 1.08998 * 109.52482 * 62.30993 * 5 4 2 7 7 N 1.46497 * 109.52201 * 182.44069 * 5 4 2 8 8 C 1.36934 * 120.00418 * 59.99693 * 7 5 4 9 9 H 1.07997 * 119.99809 * 343.28458 * 8 7 5 10 10 C 1.38809 * 120.00097 * 163.00188 * 8 7 5 11 11 N 1.31617 * 120.00533 * 337.91555 * 10 8 7 12 12 Si 1.86806 * 119.99730 * 157.90942 * 10 8 7 13 13 H 1.48495 * 109.46851 * 93.92329 * 12 10 8 14 14 H 1.48505 * 109.47029 * 213.92031 * 12 10 8 15 15 H 1.48497 * 109.47366 * 333.92160 * 12 10 8 16 16 C 1.46500 * 119.99804 * 239.99568 * 7 5 4 17 17 C 1.47206 * 109.47319 * 275.97982 * 16 7 5 18 18 N 6.46053 * 155.24934 * 108.85904 * 2 1 3 19 19 C 1.53122 * 109.15908 * 302.34243 * 5 4 2 20 20 C 1.53039 * 109.27778 * 57.65562 * 19 5 4 21 21 N 1.46847 * 109.52287 * 300.81738 * 20 19 5 22 22 H 1.08998 * 109.46960 * 300.02035 * 1 2 3 23 23 H 1.08997 * 109.47191 * 60.02188 * 1 2 3 24 24 H 1.09003 * 109.47145 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47499 * 179.97438 * 3 2 1 26 26 H 1.08993 * 109.47398 * 299.97731 * 3 2 1 27 27 H 1.08998 * 109.46683 * 59.97897 * 3 2 1 28 28 H 1.09000 * 109.50356 * 59.25171 * 4 2 1 29 29 H 1.08998 * 109.53142 * 299.15268 * 4 2 1 30 30 H 0.97000 * 120.00332 * 179.97438 * 11 10 8 31 31 H 1.09002 * 109.47116 * 35.97586 * 16 7 5 32 32 H 1.08999 * 109.47406 * 155.97956 * 16 7 5 33 33 H 1.08998 * 109.50558 * 177.59985 * 19 5 4 34 34 H 1.09002 * 109.50688 * 297.71727 * 19 5 4 35 35 H 1.09005 * 109.46005 * 180.80731 * 20 19 5 36 36 H 1.08999 * 109.46366 * 60.83670 * 20 19 5 37 37 H 1.00899 * 111.00304 * 185.83428 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0396 1.4426 0.0000 4 6 2.0399 -0.7210 1.2499 5 6 3.5710 -0.7361 1.2355 6 1 3.9457 0.2869 1.2683 7 7 4.0642 -1.4758 2.3999 8 6 3.7227 -2.7908 2.5707 9 1 2.8933 -3.2092 2.0199 10 6 4.4463 -3.5876 3.4472 11 7 5.6760 -3.2543 3.7773 12 14 3.6745 -5.1329 4.1586 13 1 4.0406 -6.3010 3.3180 14 1 4.1724 -5.3431 5.5419 15 1 2.1973 -4.9830 4.1816 16 6 4.9228 -0.8086 3.3816 17 6 6.3194 -0.8456 2.9177 18 7 7.3971 -0.8743 2.5596 19 6 4.0548 -1.4188 -0.0469 20 6 3.4865 -0.6776 -1.2592 21 7 2.0193 -0.6917 -1.1995 22 1 -0.3633 0.5141 0.8898 23 1 -0.3633 0.5135 -0.8902 24 1 -0.3633 -1.0277 0.0005 25 1 3.1297 1.4430 0.0005 26 1 1.6765 1.9562 -0.8901 27 1 1.6758 1.9564 0.8898 28 1 1.6659 -1.7448 1.2574 29 1 1.6895 -0.1989 2.1402 30 1 6.1815 -3.8110 4.3902 31 1 4.6057 0.2279 3.4967 32 1 4.8448 -1.3211 4.3404 33 1 5.1439 -1.3948 -0.0833 34 1 3.7125 -2.4536 -0.0598 35 1 3.8175 -1.1698 -2.1737 36 1 3.8403 0.3534 -1.2532 37 1 1.6195 -0.2924 -2.0354 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691727888.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:15 Heat of formation + Delta-G solvation = 28.320883 kcal Electronic energy + Delta-G solvation = -17849.556346 eV Core-core repulsion = 15240.593314 eV Total energy + Delta-G solvation = -2608.963032 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.55756 -37.88715 -36.17300 -33.96872 -33.26558 -31.32879 -28.66250 -28.00070 -27.74331 -25.53729 -23.31757 -21.74823 -19.82986 -18.67737 -17.71406 -17.16214 -16.70381 -15.97923 -15.79450 -15.54797 -14.74590 -14.52880 -14.36173 -13.99455 -13.73158 -13.59824 -13.19867 -13.00260 -12.88692 -12.72276 -12.63398 -12.56348 -12.41945 -12.12143 -12.07561 -11.90088 -11.70294 -11.41295 -11.36244 -10.86081 -10.50636 -9.18032 -8.93654 -7.88704 -5.23555 1.50092 1.55146 1.63024 2.28059 2.51112 2.62437 3.30404 3.35762 3.62643 3.91622 4.05225 4.14806 4.24094 4.35088 4.44316 4.64291 4.66652 4.72983 4.83688 4.87737 4.98627 5.01412 5.07748 5.19657 5.27190 5.29414 5.34123 5.36858 5.51941 5.59532 5.68865 5.78123 6.29283 6.31955 6.73125 7.11124 7.32483 7.84062 8.23605 9.18177 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023632 B = 0.009145 C = 0.007587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.532234 B = 3061.084941 C = 3689.511134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.110 3.890 3 C -0.176 4.176 4 C -0.098 4.098 5 C 0.170 3.830 6 H 0.066 0.934 7 N -0.589 5.589 8 C -0.239 4.239 9 H 0.078 0.922 10 C -0.047 4.047 11 N -0.932 5.932 12 Si 0.957 3.043 13 H -0.302 1.302 14 H -0.296 1.296 15 H -0.266 1.266 16 C 0.256 3.744 17 C 0.260 3.740 18 N -0.551 5.551 19 C -0.116 4.116 20 C 0.069 3.931 21 N -0.684 5.684 22 H 0.068 0.932 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.047 0.953 29 H 0.068 0.932 30 H 0.247 0.753 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.025 0.975 34 H 0.044 0.956 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 9.778 -6.294 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.018 3.982 3 C -0.235 4.235 4 C -0.137 4.137 5 C 0.065 3.935 6 H 0.084 0.916 7 N -0.308 5.308 8 C -0.369 4.369 9 H 0.095 0.905 10 C -0.242 4.242 11 N -0.579 5.579 12 Si 0.787 3.213 13 H -0.230 1.230 14 H -0.222 1.222 15 H -0.191 1.191 16 C 0.126 3.874 17 C -0.058 4.058 18 N -0.233 5.233 19 C -0.156 4.156 20 C -0.061 4.061 21 N -0.316 5.316 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.121 0.879 32 H 0.117 0.883 33 H 0.044 0.956 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.058 0.942 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -10.245 9.021 -6.422 15.086 hybrid contribution 0.263 -0.652 0.359 0.790 sum -9.982 8.369 -6.063 14.368 Atomic orbital electron populations 1.21758 0.92608 1.02003 1.02513 1.20967 0.95617 0.91443 0.90131 1.22515 1.01298 0.96752 1.02940 1.21844 0.95232 1.00149 0.96504 1.20702 0.93833 0.93863 0.85134 0.91606 1.44446 1.54232 1.08953 1.23202 1.19330 1.09400 0.86974 1.21181 0.90475 1.25397 0.95263 1.00601 1.02911 1.70065 1.08471 1.41047 1.38302 0.85417 0.78799 0.79922 0.77161 1.23020 1.22249 1.19099 1.18617 0.77132 0.97589 0.94101 1.31292 0.95990 0.87716 0.90764 1.80789 1.15416 1.14764 1.12343 1.21868 0.97530 1.00105 0.96100 1.21791 0.88284 0.98459 0.97544 1.60400 1.06606 1.59500 1.05135 0.91314 0.91416 0.93061 0.93143 0.91626 0.91217 0.93409 0.91344 0.94345 0.87869 0.88348 0.95621 0.93761 0.90955 0.94195 0.83209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.71 71.98 0.63 -1.95 16 2 C 0.11 2.61 0.95 3.55 0.00 2.61 16 3 C -0.18 -3.57 7.86 71.98 0.57 -3.00 16 4 C -0.10 -3.03 4.18 30.65 0.13 -2.90 16 5 C 0.17 6.13 2.38 45.07 0.11 6.23 16 6 H 0.07 2.19 6.29 -2.39 -0.02 2.18 16 7 N -0.59 -25.64 2.44 -688.07 -1.68 -27.32 16 8 C -0.24 -11.79 8.32 84.03 0.70 -11.09 16 9 H 0.08 3.84 6.85 -2.91 -0.02 3.82 16 10 C -0.05 -2.44 4.85 84.86 0.41 -2.03 16 11 N -0.93 -51.86 9.51 21.65 0.21 -51.65 16 12 Si 0.96 43.36 29.61 68.60 2.03 45.39 16 13 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 14 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 C 0.26 10.68 5.35 84.58 0.45 11.13 16 17 C 0.26 12.52 13.70 89.44 1.23 13.75 16 18 N -0.55 -28.83 18.54 20.01 0.37 -28.45 16 19 C -0.12 -4.37 5.38 30.65 0.16 -4.20 16 20 C 0.07 1.94 6.25 86.33 0.54 2.48 16 21 N -0.68 -17.05 6.31 -470.26 -2.97 -20.01 16 22 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.05 1.15 4.80 -2.39 -0.01 1.14 16 26 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.05 1.74 6.95 -2.39 -0.02 1.72 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.10 3.32 8.05 -2.39 -0.02 3.30 16 32 H 0.10 4.48 6.41 -2.39 -0.02 4.46 16 33 H 0.02 1.08 8.14 -2.39 -0.02 1.07 16 34 H 0.04 1.91 7.54 -2.39 -0.02 1.89 16 35 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 36 H 0.04 1.03 6.19 -2.39 -0.01 1.02 16 37 H 0.35 6.85 8.79 -89.69 -0.79 6.06 16 Total: -1.00 -61.91 290.98 3.17 -58.75 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.28 Total: 12.27 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: 4.93 Total: 11.02 kcal Atomic # 7 Polarization: -123.37 SS G_CDS: -4.07 Total: -127.43 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -61.91 3.17 -58.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691727888.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.066 kcal (2) G-P(sol) polarization free energy of solvation -61.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds