Wall clock time and date at job start Mon Mar 30 2020 03:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99471 * 2 1 4 4 C 1.50707 * 109.46810 * 83.79159 * 3 2 1 5 5 H 1.07994 * 120.00133 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99508 * 179.97438 * 4 3 2 7 7 N 1.31514 * 120.00282 * 0.02562 * 6 4 3 8 8 Si 1.86801 * 119.99535 * 179.97438 * 6 4 3 9 9 H 1.48494 * 109.47265 * 59.99983 * 8 6 4 10 10 H 1.48506 * 109.46846 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47211 * 299.99649 * 8 6 4 12 12 C 1.34771 * 120.00612 * 179.97438 * 2 1 3 13 13 O 1.21286 * 119.99706 * 2.05494 * 12 2 1 14 14 C 1.50692 * 120.00291 * 182.05442 * 12 2 1 15 15 C 1.52299 * 115.91629 * 266.65285 * 14 12 2 16 16 C 1.51367 * 60.10438 * 253.81211 * 15 14 12 17 17 H 1.08994 * 115.85538 * 108.01403 * 16 15 14 18 18 C 1.52547 * 117.52735 * 248.65642 * 16 15 14 19 19 C 1.52874 * 110.48270 * 89.28788 * 18 16 15 20 20 C 1.53300 * 108.58072 * 306.53773 * 19 18 16 21 21 C 1.52076 * 114.63766 * 52.90404 * 14 12 2 22 22 H 1.08997 * 109.46995 * 264.25745 * 1 2 3 23 23 H 1.08999 * 109.46537 * 144.26280 * 1 2 3 24 24 H 1.08991 * 109.47117 * 24.26380 * 1 2 3 25 25 H 1.09004 * 109.47097 * 203.78570 * 3 2 1 26 26 H 1.08992 * 109.47482 * 323.78744 * 3 2 1 27 27 H 0.96996 * 120.00029 * 180.02562 * 7 6 4 28 28 H 1.09004 * 117.54221 * 0.85181 * 15 14 12 29 29 H 1.09008 * 117.54282 * 146.09959 * 15 14 12 30 30 H 1.09004 * 108.32914 * 329.51779 * 18 16 15 31 31 H 1.09005 * 109.93238 * 210.07700 * 18 16 15 32 32 H 1.08999 * 109.61605 * 186.80898 * 19 18 16 33 33 H 1.09002 * 109.61733 * 66.26425 * 19 18 16 34 34 H 1.08997 * 109.61903 * 314.71385 * 20 19 18 35 35 H 1.09002 * 109.75928 * 194.26130 * 20 19 18 36 36 H 1.09004 * 109.26435 * 285.89007 * 21 14 12 37 37 H 1.09002 * 109.26839 * 45.35966 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3154 1.7807 1.4126 5 1 1.8874 1.2174 2.2285 6 6 2.9700 2.9681 1.6631 7 7 3.4909 3.6542 0.6693 8 14 3.1157 3.6028 3.4139 9 1 3.8456 2.6093 4.2415 10 1 3.8582 4.8890 3.4139 11 1 1.7585 3.8155 3.9779 12 6 2.1390 -1.1671 0.0005 13 8 1.5332 -2.2172 -0.0367 14 6 3.6452 -1.1674 0.0473 15 6 4.3530 -1.2236 -1.3000 16 6 4.3244 -2.4484 -0.4112 17 1 3.6812 -3.2628 -0.7445 18 6 5.6417 -2.8966 0.2142 19 6 5.8549 -2.2089 1.5628 20 6 5.7234 -0.6944 1.3650 21 6 4.2444 -0.3532 1.1834 22 1 -0.3633 -0.1028 1.0225 23 1 -0.3632 -0.8342 -0.6002 24 1 -0.3633 0.9368 -0.4223 25 1 3.1935 1.1134 -0.4145 26 1 1.6610 1.9980 -0.6071 27 1 3.9517 4.4893 0.8456 28 1 3.7316 -1.2449 -2.1953 29 1 5.2984 -0.6894 -1.3955 30 1 6.4522 -2.6248 -0.4621 31 1 5.6368 -3.9773 0.3565 32 1 6.8502 -2.4437 1.9400 33 1 5.1014 -2.5521 2.2718 34 1 6.2804 -0.3914 0.4785 35 1 6.1146 -0.1733 2.2389 36 1 4.1454 0.7083 0.9563 37 1 3.7082 -0.5745 2.1063 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693247347.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:54 Heat of formation + Delta-G solvation = -39.333847 kcal Electronic energy + Delta-G solvation = -18010.541756 eV Core-core repulsion = 15366.352244 eV Total energy + Delta-G solvation = -2644.189512 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.76265 -39.15833 -36.89010 -34.51811 -34.02611 -31.83086 -29.56934 -28.00616 -25.67708 -24.96252 -23.74394 -22.17183 -20.65989 -19.13831 -18.49709 -17.90849 -17.18853 -16.45266 -16.28166 -15.53573 -15.01828 -14.77844 -14.72711 -14.33921 -14.12199 -13.77762 -13.61257 -13.33910 -13.07922 -12.84620 -12.81089 -12.66579 -12.34888 -12.06158 -11.75704 -11.74008 -11.55086 -11.36590 -10.90566 -10.64143 -10.47124 -10.33197 -9.49709 -8.16748 -6.27134 1.42932 1.44462 1.50826 1.64399 2.29260 2.44880 2.88229 3.13532 3.59721 3.78441 3.88995 4.04237 4.20545 4.32173 4.43261 4.48423 4.59964 4.65905 4.74013 4.81139 4.82394 4.85620 4.92894 5.02014 5.16833 5.18311 5.23180 5.33321 5.38925 5.45772 5.57280 5.66090 5.77569 5.85105 6.08356 6.55270 6.81395 7.27512 7.42155 8.88642 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.021354 B = 0.010574 C = 0.008125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.941217 B = 2647.385896 C = 3445.211088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.602 5.602 3 C 0.249 3.751 4 C -0.531 4.531 5 H 0.047 0.953 6 C 0.030 3.970 7 N -0.914 5.914 8 Si 0.944 3.056 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.535 3.465 13 O -0.601 6.601 14 C -0.144 4.144 15 C -0.148 4.148 16 C -0.114 4.114 17 H 0.093 0.907 18 C -0.081 4.081 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.082 4.082 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.045 0.955 26 H 0.015 0.985 27 H 0.268 0.732 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.218 -7.165 -1.062 8.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.331 5.331 3 C 0.128 3.872 4 C -0.570 4.570 5 H 0.065 0.935 6 C -0.170 4.170 7 N -0.553 5.553 8 Si 0.770 3.230 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.325 3.675 13 O -0.485 6.485 14 C -0.147 4.147 15 C -0.185 4.185 16 C -0.133 4.133 17 H 0.111 0.889 18 C -0.118 4.118 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.119 4.119 22 H 0.064 0.936 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.106 0.894 29 H 0.135 0.865 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.969 -7.486 -1.139 9.057 hybrid contribution -0.556 0.805 0.902 1.331 sum 4.413 -6.681 -0.236 8.011 Atomic orbital electron populations 1.21538 0.79721 1.02511 1.01252 1.48151 1.07350 1.07483 1.70144 1.19353 0.92336 0.79083 0.96424 1.21419 1.36045 1.06332 0.93186 0.93484 1.25455 0.94959 0.96394 1.00239 1.69985 1.37072 1.15831 1.32454 0.85812 0.78260 0.77849 0.81056 1.19549 1.20628 1.20226 1.20208 0.89796 0.82705 0.74808 1.90535 1.71162 1.32534 1.54231 1.20864 0.89669 1.04015 1.00110 1.22861 1.02278 1.01673 0.91731 1.21907 0.99329 0.90835 1.01194 0.88905 1.21055 0.93713 1.00627 0.96388 1.21563 1.02001 0.94565 0.97144 1.21612 0.94986 0.96771 1.01980 1.21116 0.95445 1.01145 0.94206 0.93613 0.91677 0.90061 0.93746 0.96658 0.92310 0.89405 0.86488 0.89765 0.90016 0.89556 0.93294 0.91144 0.91790 0.88681 0.94549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.58 10.41 127.77 1.33 4.91 16 2 N -0.60 -26.83 2.86 -851.14 -2.43 -29.26 16 3 C 0.25 11.93 4.65 85.63 0.40 12.33 16 4 C -0.53 -27.08 6.75 25.60 0.17 -26.91 16 5 H 0.05 2.49 7.81 -2.91 -0.02 2.46 16 6 C 0.03 1.55 5.26 84.66 0.45 1.99 16 7 N -0.91 -48.70 13.29 21.45 0.28 -48.41 16 8 Si 0.94 41.06 29.54 68.60 2.03 43.08 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 12 C 0.54 23.90 6.95 87.66 0.61 24.51 16 13 O -0.60 -29.03 15.92 -3.05 -0.05 -29.08 16 14 C -0.14 -5.51 1.42 -53.77 -0.08 -5.58 16 15 C -0.15 -4.77 9.00 29.83 0.27 -4.50 16 16 C -0.11 -3.61 5.48 -11.78 -0.06 -3.67 16 17 H 0.09 3.15 7.65 -2.39 -0.02 3.13 16 18 C -0.08 -1.96 5.86 30.40 0.18 -1.78 16 19 C -0.12 -2.97 5.94 30.65 0.18 -2.78 16 20 C -0.12 -3.56 5.70 30.65 0.17 -3.39 16 21 C -0.08 -3.22 3.94 30.25 0.12 -3.10 16 22 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 2.39 7.57 -2.39 -0.02 2.38 16 24 H 0.08 2.85 7.90 -2.39 -0.02 2.83 16 25 H 0.04 2.19 5.32 -2.38 -0.01 2.18 16 26 H 0.02 0.78 7.96 -2.39 -0.02 0.76 16 27 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 28 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 29 H 0.12 3.35 7.28 -2.38 -0.02 3.34 16 30 H 0.08 1.73 8.06 -2.38 -0.02 1.71 16 31 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.40 8.04 -2.39 -0.02 1.38 16 34 H 0.07 2.01 7.12 -2.39 -0.02 1.99 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 4.35 4.02 -2.38 -0.01 4.34 16 37 H 0.04 1.56 8.13 -2.39 -0.02 1.54 16 Total: -1.00 -58.85 290.17 4.61 -54.24 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 1.04 Total: 17.40 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 3.74 Total: -7.98 kcal Atomic # 7 Polarization: -75.53 SS G_CDS: -2.15 Total: -77.67 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.05 Total: -29.08 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -58.85 4.61 -54.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693247347.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.908 kcal (2) G-P(sol) polarization free energy of solvation -58.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds