Wall clock time and date at job start Mon Mar 30 2020 03:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 120.00093 * 2 1 4 4 C 1.52997 * 109.47140 * 269.99723 * 3 2 1 5 5 H 1.09005 * 109.35255 * 54.71891 * 4 3 2 6 6 C 1.52876 * 109.35944 * 295.00304 * 4 3 2 7 7 C 1.53304 * 108.58323 * 185.26972 * 6 4 3 8 8 C 1.52872 * 108.59263 * 74.43799 * 7 6 4 9 9 C 1.52079 * 110.51383 * 305.11689 * 8 7 6 10 10 H 1.08993 * 114.63743 * 166.85039 * 9 8 7 11 11 C 1.52312 * 119.83591 * 310.44180 * 9 8 7 12 12 C 1.52064 * 120.02301 * 21.69407 * 9 8 7 13 13 H 1.09002 * 117.25632 * 144.44119 * 12 9 8 14 14 C 1.34773 * 120.00149 * 179.97438 * 2 1 3 15 15 O 1.21687 * 120.00447 * 180.02562 * 14 2 1 16 16 C 1.46375 * 119.99949 * 0.02562 * 14 2 1 17 17 H 1.07999 * 120.00074 * 16.21603 * 16 14 2 18 18 C 1.40048 * 120.00093 * 196.21569 * 16 14 2 19 19 N 1.30670 * 120.00120 * 203.79741 * 18 16 14 20 20 Si 1.86804 * 120.00046 * 23.80444 * 18 16 14 21 21 H 1.48502 * 109.46776 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46900 * 240.00151 * 20 18 16 23 23 H 1.48495 * 109.47232 * 119.99614 * 20 18 16 24 24 H 1.09001 * 109.47262 * 270.00282 * 1 2 3 25 25 H 1.09006 * 109.46963 * 30.00091 * 1 2 3 26 26 H 1.09003 * 109.46929 * 150.00252 * 1 2 3 27 27 H 1.09000 * 109.47079 * 30.00137 * 3 2 1 28 28 H 1.09006 * 109.46917 * 149.99786 * 3 2 1 29 29 H 1.09006 * 109.61402 * 304.99404 * 6 4 3 30 30 H 1.08994 * 109.62005 * 65.53806 * 6 4 3 31 31 H 1.08991 * 109.61546 * 194.17397 * 7 6 4 32 32 H 1.09000 * 109.61171 * 314.53061 * 7 6 4 33 33 H 1.08997 * 109.26319 * 65.37608 * 8 7 6 34 34 H 1.08991 * 109.26701 * 184.88427 * 8 7 6 35 35 H 1.08999 * 117.53756 * 217.19767 * 11 9 8 36 36 H 1.08997 * 117.53446 * 2.44984 * 11 9 8 37 37 H 0.97004 * 119.99854 * 0.04771 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5057 1.7494 -1.9811 6 6 3.3817 0.7053 -2.1234 7 6 3.7312 1.2316 -3.5202 8 6 4.7301 2.3794 -3.3728 9 6 4.1798 3.4486 -2.4417 10 1 4.9134 4.1829 -2.1093 11 6 2.7709 3.9867 -2.6547 12 6 3.0889 3.0986 -1.4418 13 1 3.1207 3.5977 -0.4733 14 6 2.1388 -1.1672 0.0005 15 8 3.3557 -1.1672 0.0010 16 6 1.4070 -2.4348 0.0005 17 1 0.3593 -2.4535 -0.2611 18 6 2.0653 -3.6235 0.3397 19 7 1.6043 -4.7699 -0.0852 20 14 3.6025 -3.5701 1.3999 21 1 3.9153 -2.1606 1.7474 22 1 4.7412 -4.1591 0.6505 23 1 3.3731 -4.3479 2.6438 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 4.2930 0.5932 -1.5359 30 1 2.8785 -0.2576 -2.2104 31 1 4.1771 0.4320 -4.1115 32 1 2.8274 1.5906 -4.0126 33 1 5.6640 1.9931 -2.9645 34 1 4.9201 2.8189 -4.3519 35 1 2.6040 5.0482 -2.4720 36 1 2.1804 3.5484 -3.4592 37 1 0.8064 -4.7976 -0.6362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694399429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:35 Heat of formation + Delta-G solvation = -36.446764 kcal Electronic energy + Delta-G solvation = -17648.211343 eV Core-core repulsion = 15004.147024 eV Total energy + Delta-G solvation = -2644.064319 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.63473 -37.81817 -34.36549 -32.87095 -32.63014 -31.25469 -27.04638 -25.89960 -24.96676 -22.86515 -21.97204 -20.69225 -19.06988 -18.16182 -17.19628 -16.01048 -15.42468 -15.02556 -14.18602 -13.91966 -13.80360 -13.61411 -13.29424 -12.94983 -12.32879 -12.15703 -11.92155 -11.88010 -11.63309 -11.35336 -11.17914 -10.74385 -10.69717 -10.58604 -10.47630 -9.99922 -9.79039 -9.60907 -9.34403 -9.17301 -8.78169 -7.84818 -7.31604 -6.96585 -4.78125 3.53051 3.58106 3.89227 4.03407 4.30154 4.34647 4.54920 4.82177 4.96235 4.99154 5.24254 5.37073 5.47622 5.53664 5.59896 5.72684 5.81229 5.81744 5.90111 5.94260 6.03205 6.11359 6.23929 6.24763 6.28575 6.38036 6.46547 6.52334 6.55934 6.65008 6.90841 7.09171 7.40894 7.83955 7.95119 8.24043 8.92364 9.12494 10.23955 10.34991 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.007439 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.549992 B = 3763.106607 C = 4060.704888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.641 5.641 3 C 0.131 3.869 4 C -0.068 4.068 5 H 0.063 0.937 6 C -0.101 4.101 7 C -0.123 4.123 8 C -0.086 4.086 9 C -0.138 4.138 10 H 0.092 0.908 11 C -0.189 4.189 12 C -0.133 4.133 13 H 0.099 0.901 14 C 0.556 3.444 15 O -0.610 6.610 16 C -0.614 4.614 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.830 5.830 20 Si 1.082 2.918 21 H -0.251 1.251 22 H -0.287 1.287 23 H -0.309 1.309 24 H 0.034 0.966 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.650 14.127 -3.711 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.376 5.376 3 C 0.007 3.993 4 C -0.088 4.088 5 H 0.081 0.919 6 C -0.138 4.138 7 C -0.161 4.161 8 C -0.123 4.123 9 C -0.156 4.156 10 H 0.111 0.889 11 C -0.226 4.226 12 C -0.152 4.152 13 H 0.117 0.883 14 C 0.364 3.636 15 O -0.500 6.500 16 C -0.650 4.650 17 H 0.091 0.909 18 C -0.146 4.146 19 N -0.457 5.457 20 Si 0.909 3.091 21 H -0.175 1.175 22 H -0.213 1.213 23 H -0.238 1.238 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.088 0.912 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.332 13.177 -3.050 13.725 hybrid contribution -1.652 1.047 -0.900 2.154 sum 0.680 14.225 -3.951 14.779 Atomic orbital electron populations 1.21378 0.81850 1.01001 0.99859 1.47699 1.05299 1.05432 1.79175 1.21182 0.97558 0.86043 0.94560 1.21071 0.97840 0.91806 0.98058 0.91900 1.21541 1.00138 0.98112 0.94008 1.21655 0.98564 0.97325 0.98544 1.20823 0.98834 0.94796 0.97851 1.21778 0.91777 1.00569 1.01476 0.88946 1.23107 0.99400 0.98870 1.01256 1.22242 1.02307 0.96678 0.93968 0.88331 1.18268 0.86596 0.83057 0.75656 1.90441 1.14693 1.86633 1.58275 1.22000 0.99047 0.91572 1.52345 0.90855 1.26856 1.02674 0.90833 0.94212 1.70613 1.20682 1.28231 1.26205 0.83362 0.73947 0.77056 0.74728 1.17549 1.21293 1.23807 0.94733 0.93922 0.91218 0.92832 0.90670 0.91000 0.91100 0.92204 0.92701 0.91565 0.92333 0.89503 0.89070 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.91 10.24 59.84 0.61 2.52 16 2 N -0.64 -13.93 2.77 -183.24 -0.51 -14.44 16 3 C 0.13 2.42 4.85 -4.04 -0.02 2.40 16 4 C -0.07 -1.13 2.33 -90.83 -0.21 -1.34 16 5 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 6 C -0.10 -1.88 3.80 -26.64 -0.10 -1.98 16 7 C -0.12 -1.88 5.70 -26.64 -0.15 -2.03 16 8 C -0.09 -1.13 5.93 -27.27 -0.16 -1.29 16 9 C -0.14 -1.76 6.00 -91.92 -0.55 -2.31 16 10 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 11 C -0.19 -2.28 9.66 -26.74 -0.26 -2.54 16 12 C -0.13 -1.84 5.61 -90.90 -0.51 -2.35 16 13 H 0.10 1.28 7.92 -51.93 -0.41 0.86 16 14 C 0.56 14.63 5.74 -12.99 -0.07 14.55 16 15 O -0.61 -17.12 10.58 5.20 0.06 -17.06 16 16 C -0.61 -17.19 9.03 -35.63 -0.32 -17.51 16 17 H 0.07 2.03 6.18 -52.49 -0.32 1.71 16 18 C 0.07 2.10 5.48 -17.37 -0.10 2.00 16 19 N -0.83 -23.99 13.65 55.55 0.76 -23.23 16 20 Si 1.08 27.84 27.34 -169.99 -4.65 23.19 16 21 H -0.25 -6.66 5.81 56.52 0.33 -6.33 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.31 -7.55 7.11 56.52 0.40 -7.15 16 24 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 26 H 0.07 1.37 5.97 -51.93 -0.31 1.06 16 27 H 0.05 0.85 8.07 -51.93 -0.42 0.43 16 28 H 0.07 1.54 7.42 -51.93 -0.39 1.15 16 29 H 0.07 1.48 7.63 -51.93 -0.40 1.09 16 30 H 0.07 1.59 6.54 -51.93 -0.34 1.25 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.80 7.12 -51.93 -0.37 0.43 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.12 7.27 -51.93 -0.38 0.75 16 37 H 0.28 7.78 8.72 -40.82 -0.36 7.42 16 LS Contribution 286.57 15.07 4.32 4.32 Total: -1.00 -30.21 286.57 -7.80 -38.01 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.93 Total: -0.92 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -1.85 Total: -9.87 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.25 Total: -37.67 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.06 Total: -17.06 kcal Atomic # 14 Polarization: 27.84 SS G_CDS: -4.65 Total: 23.19 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.21 -7.80 -38.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694399429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.561 kcal (2) G-P(sol) polarization free energy of solvation -30.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds