Wall clock time and date at job start Mon Mar 30 2020 03:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 120.00093 * 2 1 4 4 C 1.52997 * 109.47140 * 269.99723 * 3 2 1 5 5 H 1.09005 * 109.35255 * 54.71891 * 4 3 2 6 6 C 1.52876 * 109.35944 * 295.00304 * 4 3 2 7 7 C 1.53304 * 108.58323 * 185.26972 * 6 4 3 8 8 C 1.52872 * 108.59263 * 74.43799 * 7 6 4 9 9 C 1.52079 * 110.51383 * 305.11689 * 8 7 6 10 10 H 1.08993 * 114.63743 * 166.85039 * 9 8 7 11 11 C 1.52312 * 119.83591 * 310.44180 * 9 8 7 12 12 C 1.52064 * 120.02301 * 21.69407 * 9 8 7 13 13 H 1.09002 * 117.25632 * 144.44119 * 12 9 8 14 14 C 1.34773 * 120.00149 * 179.97438 * 2 1 3 15 15 O 1.21687 * 120.00447 * 180.02562 * 14 2 1 16 16 C 1.46375 * 119.99949 * 0.02562 * 14 2 1 17 17 H 1.07999 * 120.00074 * 16.21603 * 16 14 2 18 18 C 1.40048 * 120.00093 * 196.21569 * 16 14 2 19 19 N 1.30670 * 120.00120 * 203.79741 * 18 16 14 20 20 Si 1.86804 * 120.00046 * 23.80444 * 18 16 14 21 21 H 1.48502 * 109.46776 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46900 * 240.00151 * 20 18 16 23 23 H 1.48495 * 109.47232 * 119.99614 * 20 18 16 24 24 H 1.09001 * 109.47262 * 270.00282 * 1 2 3 25 25 H 1.09006 * 109.46963 * 30.00091 * 1 2 3 26 26 H 1.09003 * 109.46929 * 150.00252 * 1 2 3 27 27 H 1.09000 * 109.47079 * 30.00137 * 3 2 1 28 28 H 1.09006 * 109.46917 * 149.99786 * 3 2 1 29 29 H 1.09006 * 109.61402 * 304.99404 * 6 4 3 30 30 H 1.08994 * 109.62005 * 65.53806 * 6 4 3 31 31 H 1.08991 * 109.61546 * 194.17397 * 7 6 4 32 32 H 1.09000 * 109.61171 * 314.53061 * 7 6 4 33 33 H 1.08997 * 109.26319 * 65.37608 * 8 7 6 34 34 H 1.08991 * 109.26701 * 184.88427 * 8 7 6 35 35 H 1.08999 * 117.53756 * 217.19767 * 11 9 8 36 36 H 1.08997 * 117.53446 * 2.44984 * 11 9 8 37 37 H 0.97004 * 119.99854 * 0.04771 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5057 1.7494 -1.9811 6 6 3.3817 0.7053 -2.1234 7 6 3.7312 1.2316 -3.5202 8 6 4.7301 2.3794 -3.3728 9 6 4.1798 3.4486 -2.4417 10 1 4.9134 4.1829 -2.1093 11 6 2.7709 3.9867 -2.6547 12 6 3.0889 3.0986 -1.4418 13 1 3.1207 3.5977 -0.4733 14 6 2.1388 -1.1672 0.0005 15 8 3.3557 -1.1672 0.0010 16 6 1.4070 -2.4348 0.0005 17 1 0.3593 -2.4535 -0.2611 18 6 2.0653 -3.6235 0.3397 19 7 1.6043 -4.7699 -0.0852 20 14 3.6025 -3.5701 1.3999 21 1 3.9153 -2.1606 1.7474 22 1 4.7412 -4.1591 0.6505 23 1 3.3731 -4.3479 2.6438 24 1 -0.3634 0.0001 1.0277 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5139 29 1 4.2930 0.5932 -1.5359 30 1 2.8785 -0.2576 -2.2104 31 1 4.1771 0.4320 -4.1115 32 1 2.8274 1.5906 -4.0126 33 1 5.6640 1.9931 -2.9645 34 1 4.9201 2.8189 -4.3519 35 1 2.6040 5.0482 -2.4720 36 1 2.1804 3.5484 -3.4592 37 1 0.8064 -4.7976 -0.6362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000694399429.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:35 Heat of formation + Delta-G solvation = -54.017066 kcal Electronic energy + Delta-G solvation = -17648.973249 eV Core-core repulsion = 15004.147024 eV Total energy + Delta-G solvation = -2644.826224 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.94446 -39.56954 -36.17045 -35.02809 -33.89963 -32.62654 -28.74459 -27.66873 -26.51791 -24.18823 -23.30943 -21.84009 -21.01442 -19.43045 -19.12333 -17.36461 -17.19636 -16.76200 -15.91392 -15.57266 -15.16685 -15.00307 -14.69939 -14.50111 -13.96648 -13.79900 -13.62440 -13.43136 -13.11681 -12.90289 -12.77197 -12.31482 -12.10807 -12.03901 -11.84159 -11.74187 -11.30651 -11.08303 -10.97732 -10.68567 -10.46474 -9.93463 -9.19431 -9.09631 -6.98680 1.44610 1.48243 1.95539 2.18399 2.42599 2.75460 2.89482 3.34616 3.72414 3.82917 3.84379 4.13895 4.23119 4.27716 4.42230 4.43564 4.47549 4.52782 4.67964 4.76778 4.79527 4.87447 4.94745 4.95972 5.00952 5.13578 5.26067 5.27333 5.32999 5.39241 5.47071 5.50077 5.62018 5.63251 5.96678 6.27219 6.73766 7.16056 8.12730 8.18380 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.007439 C = 0.006894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.549992 B = 3763.106607 C = 4060.704888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.643 5.643 3 C 0.129 3.871 4 C -0.058 4.058 5 H 0.065 0.935 6 C -0.095 4.095 7 C -0.119 4.119 8 C -0.084 4.084 9 C -0.141 4.141 10 H 0.111 0.889 11 C -0.168 4.168 12 C -0.151 4.151 13 H 0.111 0.889 14 C 0.555 3.445 15 O -0.633 6.633 16 C -0.632 4.632 17 H 0.068 0.932 18 C 0.038 3.962 19 N -0.848 5.848 20 Si 1.116 2.884 21 H -0.267 1.267 22 H -0.287 1.287 23 H -0.286 1.286 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.023 0.977 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.497 16.912 -3.948 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.376 5.376 3 C 0.006 3.994 4 C -0.078 4.078 5 H 0.084 0.916 6 C -0.133 4.133 7 C -0.156 4.156 8 C -0.121 4.121 9 C -0.159 4.159 10 H 0.129 0.871 11 C -0.205 4.205 12 C -0.169 4.169 13 H 0.129 0.871 14 C 0.361 3.639 15 O -0.525 6.525 16 C -0.668 4.668 17 H 0.086 0.914 18 C -0.177 4.177 19 N -0.476 5.476 20 Si 0.940 3.060 21 H -0.192 1.192 22 H -0.214 1.214 23 H -0.214 1.214 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.142 15.979 -3.287 16.454 hybrid contribution -1.651 0.236 -0.864 1.879 sum 0.490 16.215 -4.151 16.746 Atomic orbital electron populations 1.21522 0.79701 1.01988 1.00970 1.47643 1.06854 1.05384 1.77718 1.21392 0.96691 0.85166 0.96198 1.20917 0.97634 0.93029 0.96197 0.91625 1.21380 0.98821 0.96868 0.96224 1.21607 0.99740 0.98140 0.96133 1.20812 0.97754 0.94151 0.99393 1.21885 0.92652 1.00646 1.00744 0.87105 1.23164 0.98232 0.99680 0.99406 1.22151 1.03939 0.95208 0.95637 0.87057 1.18121 0.86274 0.84181 0.75340 1.90419 1.15651 1.87419 1.59004 1.22181 0.99035 0.92758 1.52868 0.91437 1.27676 1.04267 0.91001 0.94748 1.70643 1.21153 1.28529 1.27273 0.82905 0.72052 0.76307 0.74722 1.19178 1.21358 1.21403 0.93466 0.90054 0.93106 0.89240 0.93100 0.93846 0.95852 0.92735 0.91649 0.92194 0.89981 0.87116 0.89245 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.58 10.24 127.77 1.31 4.89 16 2 N -0.64 -27.65 2.77 -851.88 -2.36 -30.01 16 3 C 0.13 4.59 4.85 86.38 0.42 5.01 16 4 C -0.06 -1.85 2.33 -10.93 -0.03 -1.87 16 5 H 0.07 2.05 8.05 -2.38 -0.02 2.03 16 6 C -0.10 -3.60 3.80 30.65 0.12 -3.49 16 7 C -0.12 -3.51 5.70 30.65 0.17 -3.33 16 8 C -0.08 -2.02 5.93 30.25 0.18 -1.84 16 9 C -0.14 -3.13 6.00 -11.63 -0.07 -3.20 16 10 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 11 C -0.17 -3.32 9.66 30.59 0.30 -3.03 16 12 C -0.15 -3.72 5.61 -10.98 -0.06 -3.78 16 13 H 0.11 2.48 7.92 -2.39 -0.02 2.46 16 14 C 0.55 29.75 5.74 86.36 0.50 30.25 16 15 O -0.63 -36.50 10.58 -4.31 -0.05 -36.54 16 16 C -0.63 -36.23 9.03 24.83 0.22 -36.01 16 17 H 0.07 3.85 6.18 -2.91 -0.02 3.84 16 18 C 0.04 2.23 5.48 85.30 0.47 2.70 16 19 N -0.85 -49.83 13.65 21.84 0.30 -49.54 16 20 Si 1.12 57.27 27.34 68.60 1.88 59.15 16 21 H -0.27 -14.26 5.81 99.48 0.58 -13.68 16 22 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 24 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 2.24 8.07 -2.38 -0.02 2.22 16 26 H 0.05 1.99 5.97 -2.39 -0.01 1.98 16 27 H 0.09 2.56 8.07 -2.39 -0.02 2.54 16 28 H 0.05 2.07 7.42 -2.38 -0.02 2.06 16 29 H 0.04 1.85 7.63 -2.38 -0.02 1.83 16 30 H 0.02 1.07 6.54 -2.39 -0.02 1.06 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.79 7.12 -2.39 -0.02 1.77 16 33 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.83 7.27 -2.39 -0.02 1.82 16 37 H 0.28 15.81 8.72 -92.71 -0.81 15.00 16 Total: -1.00 -66.58 286.57 4.16 -62.41 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 0.87 Total: 8.22 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 3.52 Total: -13.69 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.06 Total: -79.55 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.05 Total: -36.54 kcal Atomic # 14 Polarization: 57.27 SS G_CDS: 1.88 Total: 59.15 kcal Total: -66.58 4.16 -62.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694399429.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.397 kcal (2) G-P(sol) polarization free energy of solvation -66.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds