Wall clock time and date at job start Mon Mar 30 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 115.55436 * 2 1 4 4 C 1.52995 * 117.49591 * 145.67058 * 2 1 3 5 5 C 1.52999 * 60.00296 * 107.48555 * 4 2 1 6 6 C 1.52999 * 117.50033 * 107.48259 * 5 4 2 7 7 C 1.50701 * 117.50367 * 252.51370 * 5 4 2 8 8 O 1.21276 * 120.00147 * 118.01523 * 7 5 4 9 9 N 1.34781 * 119.99281 * 298.01196 * 7 5 4 10 10 C 1.46500 * 119.99458 * 184.91790 * 9 7 5 11 11 C 1.50696 * 109.46931 * 90.00726 * 10 9 7 12 12 H 1.08000 * 120.00239 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99952 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00266 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 120.00126 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47350 * 89.99942 * 15 13 11 17 17 H 1.48496 * 109.46980 * 209.99875 * 15 13 11 18 18 H 1.48498 * 109.46692 * 329.99911 * 15 13 11 19 19 C 1.46497 * 120.00510 * 4.92581 * 9 7 5 20 20 C 1.52994 * 117.50103 * 188.99772 * 19 9 7 21 21 C 1.52996 * 117.50228 * 120.37117 * 19 9 7 22 22 H 1.09005 * 109.46973 * 325.72390 * 1 2 3 23 23 H 1.09001 * 109.47163 * 85.71836 * 1 2 3 24 24 H 1.08997 * 109.47290 * 205.72501 * 1 2 3 25 25 H 1.08993 * 117.50179 * 214.97490 * 4 2 1 26 26 H 1.09005 * 117.50181 * 359.97438 * 4 2 1 27 27 H 1.09008 * 109.46729 * 65.56915 * 6 5 4 28 28 H 1.08996 * 109.47680 * 185.57109 * 6 5 4 29 29 H 1.09005 * 109.47339 * 305.58031 * 6 5 4 30 30 H 1.09001 * 109.46851 * 210.00347 * 10 9 7 31 31 H 1.09002 * 109.47344 * 330.00097 * 10 9 7 32 32 H 0.96995 * 120.00258 * 179.97438 * 14 13 11 33 33 H 1.09004 * 115.54796 * 334.70161 * 19 9 7 34 34 H 1.09001 * 117.49874 * 359.97438 * 20 19 9 35 35 H 1.08996 * 117.50401 * 145.02212 * 20 19 9 36 36 H 1.09004 * 117.49868 * 214.97955 * 21 19 9 37 37 H 1.08997 * 117.49962 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 2.2364 -1.1213 -0.7646 6 6 3.5489 -0.7765 -1.4712 7 6 1.3719 -2.1411 -1.4602 8 8 0.4642 -1.7782 -2.1779 9 7 1.6076 -3.4564 -1.2845 10 6 0.8384 -4.4460 -2.0430 11 6 1.5481 -4.7491 -3.3374 12 1 2.4787 -4.2539 -3.5718 13 6 1.0092 -5.6588 -4.2224 14 7 1.6283 -5.9230 -5.3523 15 14 -0.6002 -6.5160 -3.8166 16 1 -1.7345 -5.7119 -4.3380 17 1 -0.6167 -7.8612 -4.4454 18 1 -0.7286 -6.6563 -2.3438 19 6 2.6328 -3.8966 -0.3351 20 6 3.0016 -5.3814 -0.3317 21 6 2.1863 -4.7930 0.8216 22 1 -0.3633 0.8492 0.5788 23 1 -0.3633 0.0767 -1.0248 24 1 -0.3634 -0.9258 0.4460 25 1 3.1715 -0.8749 1.2685 26 1 1.6111 -1.8578 1.2693 27 1 4.2883 -1.5495 -1.2616 28 1 3.3786 -0.7186 -2.5463 29 1 3.9151 0.1842 -1.1090 30 1 0.7450 -5.3604 -1.4570 31 1 -0.1539 -4.0487 -2.2569 32 1 1.2494 -6.5632 -5.9747 33 1 3.4294 -3.1793 -0.1374 34 1 2.4812 -6.0309 -1.0355 35 1 4.0411 -5.6414 -0.1318 36 1 2.6895 -4.6658 1.7801 37 1 1.1297 -5.0549 0.8764 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704359675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:19 Heat of formation + Delta-G solvation = 15.204716 kcal Electronic energy + Delta-G solvation = -17731.929160 eV Core-core repulsion = 15090.104617 eV Total energy + Delta-G solvation = -2641.824543 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96884 -37.36681 -36.33269 -33.19293 -32.01188 -30.06763 -28.11576 -26.88418 -23.55093 -22.45665 -21.98254 -20.94582 -20.38408 -17.84398 -16.88603 -16.25663 -15.44073 -15.19051 -14.56395 -14.18074 -13.85265 -13.49462 -13.01338 -12.66989 -12.52749 -12.24235 -12.18160 -11.95670 -11.76937 -11.66037 -11.23427 -11.09857 -10.87574 -10.67810 -10.47371 -10.11706 -10.03557 -9.98625 -9.53503 -9.48300 -8.80299 -8.58856 -7.54916 -6.08553 -4.06876 3.26876 3.27991 3.33900 3.36320 3.60862 3.90175 4.35263 4.39019 4.69833 4.86071 4.93471 5.21759 5.25476 5.27152 5.32690 5.43581 5.45323 5.73941 5.84144 5.87428 5.91022 5.96063 5.99633 6.09117 6.18457 6.24137 6.34063 6.40242 6.56581 6.62217 6.75800 6.95830 7.36339 7.60485 8.29092 8.47963 8.94462 9.01740 9.51789 11.04741 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.008572 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.364203 B = 3265.619438 C = 3564.386116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.164 4.164 5 C -0.150 4.150 6 C -0.105 4.105 7 C 0.552 3.448 8 O -0.534 6.534 9 N -0.562 5.562 10 C 0.213 3.787 11 C -0.523 4.523 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.872 3.128 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.267 1.267 19 C 0.084 3.916 20 C -0.176 4.176 21 C -0.206 4.206 22 H 0.054 0.946 23 H 0.076 0.924 24 H 0.051 0.949 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.953 6.973 14.109 16.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.141 4.141 3 H 0.125 0.875 4 C -0.201 4.201 5 C -0.153 4.153 6 C -0.163 4.163 7 C 0.339 3.661 8 O -0.410 6.410 9 N -0.291 5.291 10 C 0.093 3.907 11 C -0.562 4.562 12 H 0.094 0.906 13 C -0.129 4.129 14 N -0.535 5.535 15 Si 0.699 3.301 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.022 4.022 20 C -0.214 4.214 21 C -0.245 4.245 22 H 0.073 0.927 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.116 0.884 26 H 0.116 0.884 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.426 7.037 13.521 15.435 hybrid contribution -0.662 -0.671 0.035 0.943 sum 1.765 6.366 13.556 15.080 Atomic orbital electron populations 1.21409 0.92494 1.01060 1.03224 1.22434 0.95843 0.93778 1.02055 0.87514 1.23288 1.02727 1.01598 0.92511 1.21548 0.99110 1.00500 0.94135 1.21217 0.93147 1.00957 1.00937 1.19198 0.83762 0.82137 0.81045 1.90637 1.31852 1.79652 1.38907 1.47363 1.36349 1.05807 1.39606 1.19678 0.92501 0.86805 0.91744 1.21290 1.09469 1.24320 1.01091 0.90650 1.24839 0.96985 0.96409 0.94704 1.69892 1.39362 1.34769 1.09477 0.86906 0.84834 0.79271 0.79046 1.19907 1.21021 1.19141 1.21510 0.93847 0.93705 0.93133 1.23341 1.00650 0.96493 1.00888 1.23407 1.00948 1.06375 0.93748 0.92748 0.90516 0.92963 0.88414 0.88363 0.91816 0.91451 0.92015 0.95186 0.94554 0.92583 0.86099 0.86680 0.88731 0.88848 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.79 8.93 37.16 0.33 -1.45 16 2 C -0.12 -1.65 6.05 -90.62 -0.55 -2.20 16 3 H 0.11 1.21 8.08 -51.93 -0.42 0.79 16 4 C -0.16 -2.03 7.95 -26.73 -0.21 -2.24 16 5 C -0.15 -2.35 1.39 -155.66 -0.22 -2.57 16 6 C -0.11 -1.47 9.72 37.16 0.36 -1.11 16 7 C 0.55 11.61 6.32 -10.98 -0.07 11.54 16 8 O -0.53 -13.32 14.81 5.56 0.08 -13.24 16 9 N -0.56 -11.88 2.80 -167.48 -0.47 -12.35 16 10 C 0.21 5.27 3.56 -5.20 -0.02 5.25 16 11 C -0.52 -15.00 9.72 -34.44 -0.33 -15.33 16 12 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 13 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.90 -27.63 13.96 55.43 0.77 -26.85 16 15 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 16 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 19 C 0.08 1.40 5.19 -67.94 -0.35 1.05 16 20 C -0.18 -2.87 9.72 -26.73 -0.26 -3.13 16 21 C -0.21 -2.94 10.11 -26.73 -0.27 -3.21 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.08 1.29 7.01 -51.93 -0.36 0.93 16 24 H 0.05 0.79 7.90 -51.93 -0.41 0.38 16 25 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.10 1.26 7.88 -51.93 -0.41 0.85 16 27 H 0.06 0.83 7.36 -51.92 -0.38 0.45 16 28 H 0.07 1.08 8.12 -51.93 -0.42 0.66 16 29 H 0.06 0.69 7.95 -51.93 -0.41 0.27 16 30 H 0.03 0.71 5.37 -51.93 -0.28 0.43 16 31 H 0.04 0.97 6.79 -51.93 -0.35 0.62 16 32 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.12 1.76 5.68 -51.93 -0.30 1.46 16 34 H 0.11 2.24 6.29 -51.93 -0.33 1.91 16 35 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 299.40 15.07 4.51 4.51 Total: -1.00 -32.69 299.40 -7.23 -39.92 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.77 Total: 2.37 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.69 Total: -11.38 kcal Atomic # 7 Polarization: -39.51 SS G_CDS: 0.31 Total: -39.20 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: 0.08 Total: -13.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.69 -7.23 -39.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704359675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.123 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds