Wall clock time and date at job start Mon Mar 30 2020 03:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 115.55436 * 2 1 4 4 C 1.52995 * 117.49591 * 145.67058 * 2 1 3 5 5 C 1.52999 * 60.00296 * 107.48555 * 4 2 1 6 6 C 1.52999 * 117.50033 * 107.48259 * 5 4 2 7 7 C 1.50701 * 117.50367 * 252.51370 * 5 4 2 8 8 O 1.21276 * 120.00147 * 118.01523 * 7 5 4 9 9 N 1.34781 * 119.99281 * 298.01196 * 7 5 4 10 10 C 1.46500 * 119.99458 * 184.91790 * 9 7 5 11 11 C 1.50696 * 109.46931 * 90.00726 * 10 9 7 12 12 H 1.08000 * 120.00239 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99952 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00266 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 120.00126 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47350 * 89.99942 * 15 13 11 17 17 H 1.48496 * 109.46980 * 209.99875 * 15 13 11 18 18 H 1.48498 * 109.46692 * 329.99911 * 15 13 11 19 19 C 1.46497 * 120.00510 * 4.92581 * 9 7 5 20 20 C 1.52994 * 117.50103 * 188.99772 * 19 9 7 21 21 C 1.52996 * 117.50228 * 120.37117 * 19 9 7 22 22 H 1.09005 * 109.46973 * 325.72390 * 1 2 3 23 23 H 1.09001 * 109.47163 * 85.71836 * 1 2 3 24 24 H 1.08997 * 109.47290 * 205.72501 * 1 2 3 25 25 H 1.08993 * 117.50179 * 214.97490 * 4 2 1 26 26 H 1.09005 * 117.50181 * 359.97438 * 4 2 1 27 27 H 1.09008 * 109.46729 * 65.56915 * 6 5 4 28 28 H 1.08996 * 109.47680 * 185.57109 * 6 5 4 29 29 H 1.09005 * 109.47339 * 305.58031 * 6 5 4 30 30 H 1.09001 * 109.46851 * 210.00347 * 10 9 7 31 31 H 1.09002 * 109.47344 * 330.00097 * 10 9 7 32 32 H 0.96995 * 120.00258 * 179.97438 * 14 13 11 33 33 H 1.09004 * 115.54796 * 334.70161 * 19 9 7 34 34 H 1.09001 * 117.49874 * 359.97438 * 20 19 9 35 35 H 1.08996 * 117.50401 * 145.02212 * 20 19 9 36 36 H 1.09004 * 117.49868 * 214.97955 * 21 19 9 37 37 H 1.08997 * 117.49962 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2364 -1.1207 0.7654 5 6 2.2364 -1.1213 -0.7646 6 6 3.5489 -0.7765 -1.4712 7 6 1.3719 -2.1411 -1.4602 8 8 0.4642 -1.7782 -2.1779 9 7 1.6076 -3.4564 -1.2845 10 6 0.8384 -4.4460 -2.0430 11 6 1.5481 -4.7491 -3.3374 12 1 2.4787 -4.2539 -3.5718 13 6 1.0092 -5.6588 -4.2224 14 7 1.6283 -5.9230 -5.3523 15 14 -0.6002 -6.5160 -3.8166 16 1 -1.7345 -5.7119 -4.3380 17 1 -0.6167 -7.8612 -4.4454 18 1 -0.7286 -6.6563 -2.3438 19 6 2.6328 -3.8966 -0.3351 20 6 3.0016 -5.3814 -0.3317 21 6 2.1863 -4.7930 0.8216 22 1 -0.3633 0.8492 0.5788 23 1 -0.3633 0.0767 -1.0248 24 1 -0.3634 -0.9258 0.4460 25 1 3.1715 -0.8749 1.2685 26 1 1.6111 -1.8578 1.2693 27 1 4.2883 -1.5495 -1.2616 28 1 3.3786 -0.7186 -2.5463 29 1 3.9151 0.1842 -1.1090 30 1 0.7450 -5.3604 -1.4570 31 1 -0.1539 -4.0487 -2.2569 32 1 1.2494 -6.5632 -5.9747 33 1 3.4294 -3.1793 -0.1374 34 1 2.4812 -6.0309 -1.0355 35 1 4.0411 -5.6414 -0.1318 36 1 2.6895 -4.6658 1.7801 37 1 1.1297 -5.0549 0.8764 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704359675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:19 Heat of formation + Delta-G solvation = -5.927497 kcal Electronic energy + Delta-G solvation = -17732.845521 eV Core-core repulsion = 15090.104617 eV Total energy + Delta-G solvation = -2642.740904 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.40781 -38.67655 -37.80912 -35.18930 -33.86615 -31.30659 -30.02938 -27.95417 -25.37429 -23.99247 -23.18468 -22.11502 -21.80110 -19.36951 -19.08596 -17.66936 -17.12109 -16.46602 -16.11979 -15.92474 -15.18657 -14.92240 -14.72513 -14.14151 -13.90604 -13.68407 -13.53122 -13.37519 -13.23404 -13.05855 -12.70903 -12.60995 -12.34995 -12.23033 -12.17985 -11.85486 -11.59355 -11.35507 -11.19398 -10.86874 -10.61101 -10.33953 -9.21330 -8.37113 -6.41239 1.26475 1.30557 1.38515 1.71346 2.16947 2.26023 2.74687 2.96092 3.08408 3.52874 3.69285 3.87858 3.96293 4.07381 4.10877 4.22606 4.43492 4.63333 4.67631 4.74600 4.81615 4.85495 4.90187 4.92868 4.96644 4.98620 5.06123 5.18250 5.19775 5.28519 5.37158 5.41112 5.45517 5.61482 6.21822 6.59309 6.71488 7.18478 7.41192 8.79776 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.025863 B = 0.008572 C = 0.007854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.364203 B = 3265.619438 C = 3564.386116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 H 0.137 0.863 4 C -0.129 4.129 5 C -0.176 4.176 6 C -0.100 4.100 7 C 0.539 3.461 8 O -0.590 6.590 9 N -0.571 5.571 10 C 0.225 3.775 11 C -0.525 4.525 12 H 0.029 0.971 13 C 0.014 3.986 14 N -0.942 5.942 15 Si 0.941 3.059 16 H -0.277 1.277 17 H -0.271 1.271 18 H -0.243 1.243 19 C 0.061 3.939 20 C -0.191 4.191 21 C -0.171 4.171 22 H 0.084 0.916 23 H 0.040 0.960 24 H 0.037 0.963 25 H 0.138 0.862 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.013 0.987 32 H 0.269 0.731 33 H 0.149 0.851 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 7.443 17.756 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.139 4.139 3 H 0.155 0.845 4 C -0.166 4.166 5 C -0.179 4.179 6 C -0.157 4.157 7 C 0.329 3.671 8 O -0.471 6.471 9 N -0.300 5.300 10 C 0.103 3.897 11 C -0.564 4.564 12 H 0.047 0.953 13 C -0.184 4.184 14 N -0.582 5.582 15 Si 0.764 3.236 16 H -0.203 1.203 17 H -0.196 1.196 18 H -0.166 1.166 19 C -0.043 4.043 20 C -0.228 4.228 21 C -0.210 4.210 22 H 0.103 0.897 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.156 0.844 26 H 0.114 0.886 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.166 0.834 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.156 0.844 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.154 7.500 17.214 19.040 hybrid contribution -0.826 -0.782 -1.142 1.612 sum 2.328 6.718 16.072 17.574 Atomic orbital electron populations 1.21373 0.93788 1.01625 1.01339 1.22649 0.95054 0.95060 1.01187 0.84513 1.23429 1.03877 0.99938 0.89353 1.21467 0.99327 1.00646 0.96476 1.21218 0.92551 1.03282 0.98649 1.20270 0.83582 0.82818 0.80463 1.90592 1.34486 1.80579 1.41448 1.47454 1.36971 1.05549 1.39998 1.19254 0.91434 0.88249 0.90729 1.21423 1.08061 1.23766 1.03155 0.95296 1.25773 1.00973 0.97270 0.94398 1.70036 1.41489 1.35897 1.10792 0.85815 0.79302 0.78209 0.80281 1.20265 1.19575 1.16641 1.21955 0.93984 0.94563 0.93750 1.23341 1.02318 0.95469 1.01697 1.23476 1.00411 1.02661 0.94423 0.89715 0.94073 0.94404 0.84359 0.88633 0.91004 0.95070 0.88220 0.93698 0.96939 0.92241 0.83366 0.90576 0.85994 0.84367 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.43 8.93 71.98 0.64 -2.79 16 2 C -0.12 -2.90 6.05 -10.79 -0.07 -2.96 16 3 H 0.14 2.47 8.08 -2.39 -0.02 2.45 16 4 C -0.13 -2.61 7.95 30.59 0.24 -2.37 16 5 C -0.18 -5.24 1.39 -52.93 -0.07 -5.31 16 6 C -0.10 -2.62 9.72 71.98 0.70 -1.92 16 7 C 0.54 23.20 6.32 87.66 0.55 23.75 16 8 O -0.59 -31.16 14.81 -3.02 -0.04 -31.21 16 9 N -0.57 -24.48 2.80 -802.17 -2.24 -26.72 16 10 C 0.23 11.50 3.56 85.63 0.31 11.80 16 11 C -0.53 -31.66 9.72 25.60 0.25 -31.41 16 12 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 13 C 0.01 0.85 5.47 84.65 0.46 1.31 16 14 N -0.94 -60.36 13.96 21.45 0.30 -60.06 16 15 Si 0.94 45.68 27.47 68.60 1.88 47.57 16 16 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 18 H -0.24 -10.76 6.54 99.48 0.65 -10.10 16 19 C 0.06 1.94 5.19 44.99 0.23 2.17 16 20 C -0.19 -5.91 9.72 30.59 0.30 -5.61 16 21 C -0.17 -4.30 10.11 30.59 0.31 -3.99 16 22 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 23 H 0.04 1.42 7.01 -2.39 -0.02 1.41 16 24 H 0.04 1.11 7.90 -2.39 -0.02 1.10 16 25 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.10 2.04 7.88 -2.38 -0.02 2.02 16 27 H 0.07 1.72 7.36 -2.38 -0.02 1.70 16 28 H 0.03 1.01 8.12 -2.39 -0.02 0.99 16 29 H 0.10 1.84 7.95 -2.38 -0.02 1.82 16 30 H 0.05 2.14 5.37 -2.39 -0.01 2.13 16 31 H 0.01 0.70 6.79 -2.39 -0.02 0.68 16 32 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 33 H 0.15 3.81 5.68 -2.39 -0.01 3.79 16 34 H 0.08 2.99 6.29 -2.39 -0.02 2.97 16 35 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 36 H 0.14 2.30 8.14 -2.38 -0.02 2.28 16 37 H 0.08 2.22 8.10 -2.39 -0.02 2.21 16 Total: -1.00 -78.02 299.40 4.74 -73.28 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.99 Total: 14.47 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: 3.86 Total: -17.33 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -1.94 Total: -86.78 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.04 Total: -31.21 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.88 Total: 47.57 kcal Total: -78.02 4.74 -73.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704359675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.352 kcal (2) G-P(sol) polarization free energy of solvation -78.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds