Wall clock time and date at job start Mon Mar 30 2020 03:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 115.55360 * 2 1 4 4 C 1.52996 * 117.50388 * 214.28934 * 2 1 3 5 5 C 1.52995 * 60.00012 * 252.51326 * 4 2 1 6 6 C 1.53003 * 117.51530 * 252.51642 * 5 4 2 7 7 C 1.50700 * 117.50359 * 107.48911 * 5 4 2 8 8 O 1.21282 * 120.00128 * 265.81831 * 7 5 4 9 9 N 1.34778 * 119.99797 * 85.81012 * 7 5 4 10 10 C 1.46507 * 119.99687 * 184.31875 * 9 7 5 11 11 C 1.50698 * 109.47433 * 89.99973 * 10 9 7 12 12 H 1.07999 * 119.99509 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00062 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99874 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 120.00093 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47105 * 90.00009 * 15 13 11 17 17 H 1.48500 * 109.47387 * 210.00260 * 15 13 11 18 18 H 1.48498 * 109.47215 * 330.00305 * 15 13 11 19 19 C 1.46491 * 120.00569 * 4.31445 * 9 7 5 20 20 C 1.52999 * 117.50274 * 185.63151 * 19 9 7 21 21 C 1.53003 * 117.49814 * 116.97001 * 19 9 7 22 22 H 1.08996 * 109.47202 * 274.33437 * 1 2 3 23 23 H 1.09007 * 109.46863 * 34.33094 * 1 2 3 24 24 H 1.08997 * 109.46787 * 154.33125 * 1 2 3 25 25 H 1.09005 * 117.49123 * 0.02562 * 4 2 1 26 26 H 1.09001 * 117.50316 * 145.02149 * 4 2 1 27 27 H 1.08996 * 109.47472 * 133.11932 * 6 5 4 28 28 H 1.09003 * 109.47253 * 253.12160 * 6 5 4 29 29 H 1.09006 * 109.46998 * 13.11518 * 6 5 4 30 30 H 1.09000 * 109.47026 * 210.00119 * 10 9 7 31 31 H 1.08999 * 109.46617 * 329.99894 * 10 9 7 32 32 H 0.97003 * 120.00166 * 179.97438 * 14 13 11 33 33 H 1.09000 * 115.54973 * 331.30720 * 19 9 7 34 34 H 1.09001 * 117.50009 * 0.02562 * 20 19 9 35 35 H 1.09004 * 117.49649 * 145.02349 * 20 19 9 36 36 H 1.09000 * 117.49768 * 214.98059 * 21 19 9 37 37 H 1.08996 * 117.49693 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7645 5 6 2.2364 -1.1207 0.7654 6 6 3.5486 -0.7752 1.4723 7 6 1.3720 -2.1400 1.4617 8 8 0.2479 -1.8458 1.8094 9 7 1.8480 -3.3787 1.6977 10 6 0.9769 -4.3978 2.2885 11 6 0.2701 -5.1517 1.1916 12 1 0.4513 -4.8969 0.1579 13 6 -0.6085 -6.1661 1.5079 14 7 -1.2250 -6.8243 0.5507 15 14 -0.9224 -6.6063 3.2959 16 1 -2.0566 -5.7990 3.8127 17 1 -1.2546 -8.0499 3.3993 18 1 0.2946 -6.3198 4.0972 19 6 3.2362 -3.7060 1.3635 20 6 3.6792 -5.1608 1.5315 21 6 4.1673 -4.0933 2.5141 22 1 -0.3633 0.0777 1.0247 23 1 -0.3633 0.8487 -0.5796 24 1 -0.3633 -0.9262 -0.4451 25 1 1.6112 -1.8586 -1.2679 26 1 3.1716 -0.8756 -1.2679 27 1 3.3556 -0.0501 2.2628 28 1 3.9771 -1.6792 1.9051 29 1 4.2482 -0.3503 0.7523 30 1 1.5769 -5.0913 2.8777 31 1 0.2402 -3.9172 2.9321 32 1 -1.8429 -7.5382 0.7731 33 1 3.6663 -3.1413 0.5363 34 1 2.9376 -5.8745 1.8904 35 1 4.4010 -5.5530 0.8151 36 1 5.2101 -3.7838 2.4436 37 1 3.7469 -4.1049 3.5196 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704359677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:22 Heat of formation + Delta-G solvation = 18.631638 kcal Electronic energy + Delta-G solvation = -17748.017036 eV Core-core repulsion = 15106.341096 eV Total energy + Delta-G solvation = -2641.675940 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.97349 -37.43677 -36.23641 -33.20683 -32.05635 -30.08543 -27.98364 -26.81122 -23.53034 -22.45453 -22.02079 -20.91330 -20.32249 -17.92577 -16.90228 -16.21856 -15.48906 -15.11568 -14.39763 -14.22890 -13.85536 -13.36315 -13.07375 -12.66484 -12.54717 -12.28982 -12.15166 -11.86481 -11.75809 -11.56288 -11.16975 -11.07428 -10.84165 -10.64142 -10.45796 -10.13433 -9.99909 -9.89762 -9.50473 -9.45175 -8.71259 -8.58960 -7.56627 -6.08795 -4.07060 3.20690 3.27962 3.33809 3.36303 3.65710 3.99075 4.33443 4.38907 4.75035 4.92112 5.00082 5.17736 5.23639 5.25861 5.30210 5.42918 5.57333 5.77522 5.84372 5.90233 5.93426 5.97794 6.13775 6.13939 6.28128 6.30877 6.36245 6.42363 6.58016 6.75370 6.84323 6.96568 7.36663 7.60389 8.29120 8.47790 8.94259 9.02482 9.51648 11.04516 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.009271 C = 0.007687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.464291 B = 3019.406863 C = 3641.736369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 H 0.104 0.896 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.118 4.118 7 C 0.551 3.449 8 O -0.533 6.533 9 N -0.563 5.563 10 C 0.213 3.787 11 C -0.523 4.523 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.897 5.897 15 Si 0.873 3.127 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.084 3.916 20 C -0.175 4.175 21 C -0.207 4.207 22 H 0.077 0.923 23 H 0.046 0.954 24 H 0.058 0.942 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.264 0.736 33 H 0.122 0.878 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.709 9.651 0.761 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.138 4.138 3 H 0.123 0.877 4 C -0.195 4.195 5 C -0.160 4.160 6 C -0.175 4.175 7 C 0.338 3.662 8 O -0.410 6.410 9 N -0.292 5.292 10 C 0.093 3.907 11 C -0.561 4.561 12 H 0.093 0.907 13 C -0.129 4.129 14 N -0.535 5.535 15 Si 0.700 3.300 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.191 1.191 19 C -0.022 4.022 20 C -0.212 4.212 21 C -0.246 4.246 22 H 0.096 0.904 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.048 0.952 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.139 0.861 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.937 9.636 0.930 14.606 hybrid contribution -0.153 -0.506 0.791 0.952 sum 10.783 9.130 1.721 14.234 Atomic orbital electron populations 1.21401 0.91834 1.01128 1.03197 1.22371 0.96293 0.93319 1.01812 0.87745 1.23279 1.02763 1.01873 0.91630 1.21528 0.98929 1.00856 0.94665 1.21486 0.93494 1.02462 1.00027 1.19236 0.86246 0.81699 0.79055 1.90636 1.19732 1.78725 1.51868 1.47346 1.09954 1.10969 1.60901 1.19684 0.89662 0.86414 0.94948 1.21280 1.24468 1.16283 0.94102 0.90718 1.24833 0.95194 0.95843 0.97059 1.69891 1.28595 1.23042 1.31987 0.86905 0.79450 0.77822 0.85861 1.19913 1.21037 1.19135 1.21516 0.83145 0.99005 0.98555 1.23356 1.03281 0.92711 1.01878 1.23466 0.99229 1.05538 0.96399 0.90436 0.93498 0.92280 0.88221 0.88413 0.92206 0.90644 0.92114 0.95166 0.94529 0.92589 0.86095 0.86778 0.88641 0.88770 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 8.52 37.16 0.32 -1.62 16 2 C -0.12 -1.73 6.12 -90.63 -0.55 -2.28 16 3 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.16 -2.24 9.31 -26.74 -0.25 -2.49 16 5 C -0.16 -2.47 1.49 -155.66 -0.23 -2.70 16 6 C -0.12 -1.46 9.21 37.16 0.34 -1.11 16 7 C 0.55 11.56 6.87 -10.98 -0.08 11.48 16 8 O -0.53 -13.10 13.42 5.56 0.07 -13.03 16 9 N -0.56 -11.86 2.79 -167.47 -0.47 -12.33 16 10 C 0.21 5.25 3.61 -5.19 -0.02 5.24 16 11 C -0.52 -14.94 9.88 -34.44 -0.34 -15.28 16 12 H 0.07 2.36 8.06 -52.49 -0.42 1.93 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.57 13.96 55.43 0.77 -26.80 16 15 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 16 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 18 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 19 C 0.08 1.39 4.39 -67.93 -0.30 1.10 16 20 C -0.17 -2.82 9.72 -26.69 -0.26 -3.07 16 21 C -0.21 -2.91 9.41 -26.69 -0.25 -3.16 16 22 H 0.08 1.41 6.80 -51.93 -0.35 1.06 16 23 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 24 H 0.06 1.11 7.74 -51.93 -0.40 0.71 16 25 H 0.10 1.62 8.05 -51.93 -0.42 1.20 16 26 H 0.10 1.09 8.08 -51.93 -0.42 0.67 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.94 4.89 -51.93 -0.25 0.68 16 29 H 0.06 0.60 7.94 -51.93 -0.41 0.19 16 30 H 0.03 0.72 5.32 -51.93 -0.28 0.44 16 31 H 0.04 0.97 6.79 -51.93 -0.35 0.62 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.12 1.77 6.41 -51.93 -0.33 1.43 16 34 H 0.11 2.18 6.29 -51.93 -0.33 1.86 16 35 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 295.90 15.07 4.46 4.46 Total: -1.00 -32.37 295.90 -7.22 -39.59 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.67 Total: 3.01 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.72 Total: -11.89 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.31 Total: -39.13 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: 0.07 Total: -13.03 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.37 -7.22 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704359677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.225 kcal (2) G-P(sol) polarization free energy of solvation -32.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds