Wall clock time and date at job start Mon Mar 30 2020 03:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 115.55360 * 2 1 4 4 C 1.52996 * 117.50388 * 214.28934 * 2 1 3 5 5 C 1.52995 * 60.00012 * 252.51326 * 4 2 1 6 6 C 1.53003 * 117.51530 * 252.51642 * 5 4 2 7 7 C 1.50700 * 117.50359 * 107.48911 * 5 4 2 8 8 O 1.21282 * 120.00128 * 265.81831 * 7 5 4 9 9 N 1.34778 * 119.99797 * 85.81012 * 7 5 4 10 10 C 1.46507 * 119.99687 * 184.31875 * 9 7 5 11 11 C 1.50698 * 109.47433 * 89.99973 * 10 9 7 12 12 H 1.07999 * 119.99509 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00062 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99874 * 180.02562 * 13 11 10 15 15 Si 1.86792 * 120.00093 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47105 * 90.00009 * 15 13 11 17 17 H 1.48500 * 109.47387 * 210.00260 * 15 13 11 18 18 H 1.48498 * 109.47215 * 330.00305 * 15 13 11 19 19 C 1.46491 * 120.00569 * 4.31445 * 9 7 5 20 20 C 1.52999 * 117.50274 * 185.63151 * 19 9 7 21 21 C 1.53003 * 117.49814 * 116.97001 * 19 9 7 22 22 H 1.08996 * 109.47202 * 274.33437 * 1 2 3 23 23 H 1.09007 * 109.46863 * 34.33094 * 1 2 3 24 24 H 1.08997 * 109.46787 * 154.33125 * 1 2 3 25 25 H 1.09005 * 117.49123 * 0.02562 * 4 2 1 26 26 H 1.09001 * 117.50316 * 145.02149 * 4 2 1 27 27 H 1.08996 * 109.47472 * 133.11932 * 6 5 4 28 28 H 1.09003 * 109.47253 * 253.12160 * 6 5 4 29 29 H 1.09006 * 109.46998 * 13.11518 * 6 5 4 30 30 H 1.09000 * 109.47026 * 210.00119 * 10 9 7 31 31 H 1.08999 * 109.46617 * 329.99894 * 10 9 7 32 32 H 0.97003 * 120.00166 * 179.97438 * 14 13 11 33 33 H 1.09000 * 115.54973 * 331.30720 * 19 9 7 34 34 H 1.09001 * 117.50009 * 0.02562 * 20 19 9 35 35 H 1.09004 * 117.49649 * 145.02349 * 20 19 9 36 36 H 1.09000 * 117.49768 * 214.98059 * 21 19 9 37 37 H 1.08996 * 117.49693 * 0.02562 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1212 -0.7645 5 6 2.2364 -1.1207 0.7654 6 6 3.5486 -0.7752 1.4723 7 6 1.3720 -2.1400 1.4617 8 8 0.2479 -1.8458 1.8094 9 7 1.8480 -3.3787 1.6977 10 6 0.9769 -4.3978 2.2885 11 6 0.2701 -5.1517 1.1916 12 1 0.4513 -4.8969 0.1579 13 6 -0.6085 -6.1661 1.5079 14 7 -1.2250 -6.8243 0.5507 15 14 -0.9224 -6.6063 3.2959 16 1 -2.0566 -5.7990 3.8127 17 1 -1.2546 -8.0499 3.3993 18 1 0.2946 -6.3198 4.0972 19 6 3.2362 -3.7060 1.3635 20 6 3.6792 -5.1608 1.5315 21 6 4.1673 -4.0933 2.5141 22 1 -0.3633 0.0777 1.0247 23 1 -0.3633 0.8487 -0.5796 24 1 -0.3633 -0.9262 -0.4451 25 1 1.6112 -1.8586 -1.2679 26 1 3.1716 -0.8756 -1.2679 27 1 3.3556 -0.0501 2.2628 28 1 3.9771 -1.6792 1.9051 29 1 4.2482 -0.3503 0.7523 30 1 1.5769 -5.0913 2.8777 31 1 0.2402 -3.9172 2.9321 32 1 -1.8429 -7.5382 0.7731 33 1 3.6663 -3.1413 0.5363 34 1 2.9376 -5.8745 1.8904 35 1 4.4010 -5.5530 0.8151 36 1 5.2101 -3.7838 2.4436 37 1 3.7469 -4.1049 3.5196 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704359677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:21 Heat of formation + Delta-G solvation = -2.259218 kcal Electronic energy + Delta-G solvation = -17748.922931 eV Core-core repulsion = 15106.341096 eV Total energy + Delta-G solvation = -2642.581836 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.43601 -38.77688 -37.71726 -35.19928 -33.89261 -31.43173 -29.83841 -27.95284 -25.34055 -24.00449 -23.20899 -22.16599 -21.77814 -19.44432 -19.11094 -17.65044 -17.14832 -16.49550 -16.13354 -15.61657 -15.37731 -14.87384 -14.73651 -14.19887 -13.80297 -13.75456 -13.60964 -13.35043 -13.16950 -13.02745 -12.65438 -12.61179 -12.37394 -12.22693 -12.15907 -11.84173 -11.53497 -11.35906 -11.11490 -10.86723 -10.63472 -10.26891 -9.22597 -8.37166 -6.41305 1.26703 1.30733 1.38760 1.68164 2.15859 2.26100 2.77076 2.96266 3.06872 3.52087 3.72215 3.84651 3.92183 4.07080 4.09057 4.22473 4.44365 4.62677 4.72205 4.78988 4.84983 4.85814 4.90120 4.96292 4.97126 4.98264 5.07454 5.17585 5.19982 5.35424 5.36045 5.41385 5.51100 5.62540 6.21698 6.59008 6.71341 7.18556 7.41868 8.79768 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.009271 C = 0.007687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.464291 B = 3019.406863 C = 3641.736369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.117 4.117 3 H 0.146 0.854 4 C -0.145 4.145 5 C -0.165 4.165 6 C -0.110 4.110 7 C 0.534 3.466 8 O -0.586 6.586 9 N -0.572 5.572 10 C 0.226 3.774 11 C -0.525 4.525 12 H 0.027 0.973 13 C 0.014 3.986 14 N -0.942 5.942 15 Si 0.942 3.058 16 H -0.277 1.277 17 H -0.271 1.271 18 H -0.242 1.242 19 C 0.060 3.940 20 C -0.190 4.190 21 C -0.170 4.170 22 H 0.051 0.949 23 H 0.076 0.924 24 H 0.018 0.982 25 H 0.065 0.935 26 H 0.143 0.857 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.046 0.954 31 H 0.013 0.987 32 H 0.268 0.732 33 H 0.147 0.853 34 H 0.076 0.924 35 H 0.122 0.878 36 H 0.139 0.861 37 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.017 11.070 1.594 18.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.135 4.135 3 H 0.164 0.836 4 C -0.182 4.182 5 C -0.168 4.168 6 C -0.167 4.167 7 C 0.324 3.676 8 O -0.466 6.466 9 N -0.300 5.300 10 C 0.103 3.897 11 C -0.564 4.564 12 H 0.045 0.955 13 C -0.184 4.184 14 N -0.583 5.583 15 Si 0.765 3.235 16 H -0.203 1.203 17 H -0.196 1.196 18 H -0.166 1.166 19 C -0.044 4.044 20 C -0.228 4.228 21 C -0.209 4.209 22 H 0.070 0.930 23 H 0.095 0.905 24 H 0.037 0.963 25 H 0.084 0.916 26 H 0.161 0.839 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.164 0.836 34 H 0.095 0.905 35 H 0.140 0.860 36 H 0.157 0.843 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.303 11.055 1.754 18.162 hybrid contribution -1.234 -0.951 0.424 1.614 sum 13.069 10.104 2.178 16.662 Atomic orbital electron populations 1.21322 0.94151 1.00248 1.01663 1.22554 0.94693 0.95061 1.01216 0.83625 1.23345 1.03927 1.00554 0.90417 1.21556 0.99990 0.99872 0.95343 1.21514 0.91722 1.02746 1.00701 1.20338 0.86379 0.82468 0.78436 1.90601 1.22243 1.79810 1.53973 1.47425 1.11562 1.10367 1.60675 1.19265 0.89908 0.87000 0.93482 1.21416 1.25106 1.16789 0.93055 0.95466 1.25772 0.94788 0.95685 1.02176 1.70038 1.29618 1.23963 1.34642 0.85806 0.79964 0.77919 0.79855 1.20274 1.19633 1.16560 1.21955 0.81295 0.99860 1.01303 1.23372 1.03465 0.92021 1.03893 1.23532 1.00603 1.02109 0.94633 0.92975 0.90509 0.96283 0.91605 0.83921 0.91954 0.90630 0.88401 0.93593 0.96848 0.92260 0.83575 0.90503 0.86007 0.84280 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.52 71.98 0.61 -3.29 16 2 C -0.12 -3.14 6.12 -10.80 -0.07 -3.21 16 3 H 0.15 2.77 8.14 -2.38 -0.02 2.75 16 4 C -0.15 -3.79 9.31 30.59 0.28 -3.51 16 5 C -0.16 -4.89 1.49 -52.93 -0.08 -4.97 16 6 C -0.11 -2.24 9.21 71.98 0.66 -1.58 16 7 C 0.53 22.92 6.87 87.66 0.60 23.52 16 8 O -0.59 -30.45 13.42 -3.04 -0.04 -30.49 16 9 N -0.57 -24.45 2.79 -802.14 -2.24 -26.69 16 10 C 0.23 11.46 3.61 85.63 0.31 11.77 16 11 C -0.53 -31.60 9.88 25.60 0.25 -31.35 16 12 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 13 C 0.01 0.84 5.47 84.65 0.46 1.30 16 14 N -0.94 -60.39 13.96 21.45 0.30 -60.09 16 15 Si 0.94 45.62 27.47 68.60 1.88 47.50 16 16 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.24 -10.67 6.54 99.48 0.65 -10.02 16 19 C 0.06 1.89 4.39 44.99 0.20 2.08 16 20 C -0.19 -5.82 9.72 30.62 0.30 -5.53 16 21 C -0.17 -4.18 9.41 30.62 0.29 -3.89 16 22 H 0.05 1.99 6.80 -2.39 -0.02 1.97 16 23 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 24 H 0.02 0.74 7.74 -2.39 -0.02 0.72 16 25 H 0.07 2.17 8.05 -2.38 -0.02 2.16 16 26 H 0.14 2.45 8.08 -2.39 -0.02 2.44 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.54 4.89 -2.39 -0.01 1.53 16 29 H 0.10 1.31 7.94 -2.38 -0.02 1.29 16 30 H 0.05 2.18 5.32 -2.39 -0.01 2.17 16 31 H 0.01 0.74 6.79 -2.39 -0.02 0.73 16 32 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 33 H 0.15 3.81 6.41 -2.39 -0.02 3.79 16 34 H 0.08 2.96 6.29 -2.39 -0.02 2.94 16 35 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 36 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -77.59 295.90 4.72 -72.87 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.99 Total: 15.55 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: 3.83 Total: -18.64 kcal Atomic # 7 Polarization: -84.84 SS G_CDS: -1.94 Total: -86.78 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.04 Total: -30.49 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.50 kcal Total: -77.59 4.72 -72.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704359677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.607 kcal (2) G-P(sol) polarization free energy of solvation -77.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds