Wall clock time and date at job start Mon Mar 30 2020 03:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 115.56084 * 2 1 4 4 C 1.53001 * 117.50099 * 214.30892 * 2 1 3 5 5 C 1.53001 * 117.49784 * 145.68609 * 2 1 3 6 6 C 1.52990 * 117.50129 * 359.97438 * 5 2 1 7 7 C 1.50704 * 117.49909 * 214.97731 * 5 2 1 8 8 O 1.21284 * 119.99651 * 26.89738 * 7 5 2 9 9 N 1.34770 * 119.99912 * 206.89414 * 7 5 2 10 10 C 1.47432 * 125.64521 * 184.01842 * 9 7 5 11 11 C 1.54911 * 104.83076 * 204.08917 * 10 9 7 12 12 C 1.55158 * 101.58356 * 322.99279 * 11 10 9 13 13 H 1.08994 * 110.72077 * 276.95921 * 12 11 10 14 14 C 1.50696 * 110.71644 * 153.86248 * 12 11 10 15 15 H 1.08006 * 119.99760 * 241.45006 * 14 12 11 16 16 C 1.37874 * 120.00208 * 61.45589 * 14 12 11 17 17 N 1.31516 * 119.99797 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00294 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47243 * 89.99936 * 18 16 14 20 20 H 1.48501 * 109.47287 * 210.00332 * 18 16 14 21 21 H 1.48503 * 109.47037 * 330.00002 * 18 16 14 22 22 C 1.47021 * 125.65034 * 3.71054 * 9 7 5 23 23 H 1.09004 * 109.47372 * 274.31481 * 1 2 3 24 24 H 1.09006 * 109.47221 * 34.31056 * 1 2 3 25 25 H 1.09002 * 109.47059 * 154.31362 * 1 2 3 26 26 H 1.08996 * 117.49700 * 0.02562 * 4 2 1 27 27 H 1.09000 * 117.49817 * 145.01964 * 4 2 1 28 28 H 1.09004 * 109.47147 * 43.10680 * 6 5 2 29 29 H 1.08999 * 109.47739 * 163.10352 * 6 5 2 30 30 H 1.09001 * 109.46958 * 283.10966 * 6 5 2 31 31 H 1.08998 * 110.36782 * 322.93426 * 10 9 7 32 32 H 1.09002 * 110.36494 * 85.25737 * 10 9 7 33 33 H 1.09007 * 111.00168 * 81.06530 * 11 10 9 34 34 H 1.08994 * 111.00389 * 204.91460 * 11 10 9 35 35 H 0.96999 * 119.99654 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.88270 * 298.39172 * 22 9 7 37 37 H 1.08999 * 109.88009 * 59.56235 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7651 6 6 1.3589 -2.1557 1.4720 7 6 3.5293 -0.7811 1.4609 8 8 3.7385 0.3550 1.8304 9 7 4.4528 -1.7395 1.6725 10 6 5.7173 -1.5662 2.4104 11 6 6.6509 -2.6746 1.8630 12 6 5.6558 -3.8474 1.6588 13 1 5.4949 -4.3838 2.5939 14 6 6.1491 -4.7846 0.5868 15 1 5.5635 -4.9379 -0.3077 16 6 7.3478 -5.4464 0.7478 17 7 8.0610 -5.2594 1.8369 18 14 7.9590 -6.6087 -0.5807 19 1 8.7903 -5.8552 -1.5535 20 1 8.7744 -7.6840 0.0390 21 1 6.7979 -7.2109 -1.2840 22 6 4.3631 -3.1327 1.2114 23 1 -0.3634 0.0773 1.0248 24 1 -0.3634 0.8489 -0.5793 25 1 -0.3633 -0.9261 -0.4454 26 1 1.6113 -1.8582 -1.2685 27 1 3.1715 -0.8751 -1.2682 28 1 0.5356 -2.4419 0.8175 29 1 1.9557 -3.0359 1.7111 30 1 0.9599 -1.7266 2.3912 31 1 6.1405 -0.5815 2.2120 32 1 5.5543 -1.7015 3.4796 33 1 7.1006 -2.3745 0.9164 34 1 7.4176 -2.9352 2.5926 35 1 8.9045 -5.7248 1.9500 36 1 3.4955 -3.6165 1.6599 37 1 4.2844 -3.1590 0.1245 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704368232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:59 Heat of formation + Delta-G solvation = -22.532703 kcal Electronic energy + Delta-G solvation = -17324.841517 eV Core-core repulsion = 14681.380557 eV Total energy + Delta-G solvation = -2643.460960 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.96656 -37.57224 -36.32266 -33.00085 -30.61253 -29.38898 -28.21687 -27.84737 -25.00364 -23.44939 -21.44434 -20.13475 -19.78075 -18.14935 -16.77061 -16.19344 -15.76630 -14.96671 -14.55605 -14.10837 -13.62617 -13.58151 -13.16093 -12.71186 -12.63068 -12.39121 -12.12741 -11.90284 -11.76578 -11.36892 -11.27965 -11.19107 -10.99621 -10.80612 -10.45194 -10.10340 -9.81350 -9.69148 -9.48732 -9.17911 -8.98326 -8.50859 -7.95316 -6.13040 -4.17245 2.99054 3.25014 3.32424 3.34297 3.47346 3.87709 4.34943 4.72188 4.80190 4.86010 5.14496 5.20543 5.30936 5.59906 5.68562 5.77950 5.79065 5.82549 5.86204 5.87491 6.00569 6.02496 6.11938 6.14085 6.30851 6.32631 6.36533 6.61908 6.85770 7.04925 7.12772 7.49362 7.67155 7.85731 8.16238 8.24877 8.66729 8.83795 9.47879 10.96543 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034831 B = 0.006300 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.699264 B = 4443.501403 C = 4900.190335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.125 4.125 3 H 0.110 0.890 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.115 4.115 7 C 0.557 3.443 8 O -0.560 6.560 9 N -0.604 5.604 10 C 0.097 3.903 11 C -0.107 4.107 12 C 0.043 3.957 13 H 0.039 0.961 14 C -0.517 4.517 15 H 0.059 0.941 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.894 3.106 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.102 3.898 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.262 0.738 36 H 0.053 0.947 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.050 5.093 -2.498 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.144 4.144 3 H 0.128 0.872 4 C -0.190 4.190 5 C -0.151 4.151 6 C -0.172 4.172 7 C 0.345 3.655 8 O -0.440 6.440 9 N -0.335 5.335 10 C -0.024 4.024 11 C -0.145 4.145 12 C 0.024 3.976 13 H 0.057 0.943 14 C -0.555 4.555 15 H 0.077 0.923 16 C -0.137 4.137 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.020 4.020 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.076 0.924 26 H 0.120 0.880 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.816 5.667 -2.217 12.410 hybrid contribution 0.552 -0.732 -0.657 1.128 sum -10.264 4.935 -2.874 11.746 Atomic orbital electron populations 1.21348 0.92534 1.01763 1.01915 1.22388 0.95156 0.94777 1.02067 0.87200 1.23203 1.02811 1.01323 0.91693 1.21431 0.96409 1.02485 0.94802 1.21392 0.98408 0.97484 0.99955 1.19156 0.83387 0.83897 0.79067 1.90628 1.79296 1.20597 1.53505 1.48643 1.19720 1.11571 1.53596 1.22475 0.84323 1.00467 0.95183 1.22740 0.97575 0.93539 1.00684 1.19718 0.88107 0.92400 0.97400 0.94288 1.21002 1.05456 1.25227 1.03805 0.92288 1.24950 0.96618 0.96552 0.95575 1.69945 1.13889 1.42591 1.26058 0.86569 0.78888 0.80608 0.81802 1.20655 1.21191 1.19837 1.22549 1.00762 0.79635 0.99029 0.92080 0.92132 0.92397 0.87953 0.88550 0.91651 0.90801 0.92128 0.92020 0.92569 0.92341 0.89782 0.92841 0.92843 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 9.09 37.16 0.34 -0.86 16 2 C -0.13 -1.65 5.92 -90.62 -0.54 -2.19 16 3 H 0.11 1.60 7.92 -51.92 -0.41 1.19 16 4 C -0.15 -2.03 9.55 -26.73 -0.26 -2.29 16 5 C -0.15 -2.25 1.90 -155.66 -0.30 -2.54 16 6 C -0.12 -1.50 8.94 37.15 0.33 -1.16 16 7 C 0.56 10.77 7.15 -10.99 -0.08 10.69 16 8 O -0.56 -12.43 16.83 5.55 0.09 -12.34 16 9 N -0.60 -11.96 3.33 -170.51 -0.57 -12.53 16 10 C 0.10 1.97 6.92 -2.52 -0.02 1.95 16 11 C -0.11 -2.39 5.75 -24.58 -0.14 -2.54 16 12 C 0.04 1.00 2.86 -89.93 -0.26 0.74 16 13 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.52 -13.26 8.50 -34.44 -0.29 -13.55 16 15 H 0.06 1.48 7.58 -52.48 -0.40 1.09 16 16 C 0.07 1.72 5.33 -17.82 -0.10 1.63 16 17 N -0.89 -24.16 12.11 55.43 0.67 -23.49 16 18 Si 0.89 20.34 29.54 -169.99 -5.02 15.32 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 22 C 0.10 2.02 5.78 -3.06 -0.02 2.00 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.52 7.32 -51.93 -0.38 0.14 16 26 H 0.10 1.15 8.05 -51.93 -0.42 0.74 16 27 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 28 H 0.06 0.70 7.09 -51.93 -0.37 0.33 16 29 H 0.07 1.02 5.21 -51.93 -0.27 0.75 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 1.23 8.00 -51.93 -0.42 0.82 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 34 H 0.08 1.99 7.54 -51.93 -0.39 1.60 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.05 0.97 5.65 -51.93 -0.29 0.67 16 37 H 0.06 1.24 7.66 -51.93 -0.40 0.85 16 LS Contribution 298.05 15.07 4.49 4.49 Total: -1.00 -28.60 298.05 -7.48 -36.08 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.83 Total: 0.58 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.32 Total: -8.12 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.10 Total: -36.02 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.60 -7.48 -36.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704368232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.547 kcal (2) G-P(sol) polarization free energy of solvation -28.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds