Wall clock time and date at job start Mon Mar 30 2020 03:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 115.56084 * 2 1 4 4 C 1.53001 * 117.50099 * 214.30892 * 2 1 3 5 5 C 1.53001 * 117.49784 * 145.68609 * 2 1 3 6 6 C 1.52990 * 117.50129 * 359.97438 * 5 2 1 7 7 C 1.50704 * 117.49909 * 214.97731 * 5 2 1 8 8 O 1.21284 * 119.99651 * 26.89738 * 7 5 2 9 9 N 1.34770 * 119.99912 * 206.89414 * 7 5 2 10 10 C 1.47432 * 125.64521 * 184.01842 * 9 7 5 11 11 C 1.54911 * 104.83076 * 204.08917 * 10 9 7 12 12 C 1.55158 * 101.58356 * 322.99279 * 11 10 9 13 13 H 1.08994 * 110.72077 * 276.95921 * 12 11 10 14 14 C 1.50696 * 110.71644 * 153.86248 * 12 11 10 15 15 H 1.08006 * 119.99760 * 241.45006 * 14 12 11 16 16 C 1.37874 * 120.00208 * 61.45589 * 14 12 11 17 17 N 1.31516 * 119.99797 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00294 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47243 * 89.99936 * 18 16 14 20 20 H 1.48501 * 109.47287 * 210.00332 * 18 16 14 21 21 H 1.48503 * 109.47037 * 330.00002 * 18 16 14 22 22 C 1.47021 * 125.65034 * 3.71054 * 9 7 5 23 23 H 1.09004 * 109.47372 * 274.31481 * 1 2 3 24 24 H 1.09006 * 109.47221 * 34.31056 * 1 2 3 25 25 H 1.09002 * 109.47059 * 154.31362 * 1 2 3 26 26 H 1.08996 * 117.49700 * 0.02562 * 4 2 1 27 27 H 1.09000 * 117.49817 * 145.01964 * 4 2 1 28 28 H 1.09004 * 109.47147 * 43.10680 * 6 5 2 29 29 H 1.08999 * 109.47739 * 163.10352 * 6 5 2 30 30 H 1.09001 * 109.46958 * 283.10966 * 6 5 2 31 31 H 1.08998 * 110.36782 * 322.93426 * 10 9 7 32 32 H 1.09002 * 110.36494 * 85.25737 * 10 9 7 33 33 H 1.09007 * 111.00168 * 81.06530 * 11 10 9 34 34 H 1.08994 * 111.00389 * 204.91460 * 11 10 9 35 35 H 0.96999 * 119.99654 * 180.02562 * 17 16 14 36 36 H 1.08995 * 109.88270 * 298.39172 * 22 9 7 37 37 H 1.08999 * 109.88009 * 59.56235 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1210 -0.7649 5 6 2.2364 -1.1210 0.7651 6 6 1.3589 -2.1557 1.4720 7 6 3.5293 -0.7811 1.4609 8 8 3.7385 0.3550 1.8304 9 7 4.4528 -1.7395 1.6725 10 6 5.7173 -1.5662 2.4104 11 6 6.6509 -2.6746 1.8630 12 6 5.6558 -3.8474 1.6588 13 1 5.4949 -4.3838 2.5939 14 6 6.1491 -4.7846 0.5868 15 1 5.5635 -4.9379 -0.3077 16 6 7.3478 -5.4464 0.7478 17 7 8.0610 -5.2594 1.8369 18 14 7.9590 -6.6087 -0.5807 19 1 8.7903 -5.8552 -1.5535 20 1 8.7744 -7.6840 0.0390 21 1 6.7979 -7.2109 -1.2840 22 6 4.3631 -3.1327 1.2114 23 1 -0.3634 0.0773 1.0248 24 1 -0.3634 0.8489 -0.5793 25 1 -0.3633 -0.9261 -0.4454 26 1 1.6113 -1.8582 -1.2685 27 1 3.1715 -0.8751 -1.2682 28 1 0.5356 -2.4419 0.8175 29 1 1.9557 -3.0359 1.7111 30 1 0.9599 -1.7266 2.3912 31 1 6.1405 -0.5815 2.2120 32 1 5.5543 -1.7015 3.4796 33 1 7.1006 -2.3745 0.9164 34 1 7.4176 -2.9352 2.5926 35 1 8.9045 -5.7248 1.9500 36 1 3.4955 -3.6165 1.6599 37 1 4.2844 -3.1590 0.1245 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704368232.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:58 Heat of formation + Delta-G solvation = -38.141435 kcal Electronic energy + Delta-G solvation = -17325.518363 eV Core-core repulsion = 14681.380557 eV Total energy + Delta-G solvation = -2644.137805 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.39784 -39.00279 -37.85342 -34.91392 -32.26933 -30.77574 -29.65882 -28.79983 -26.85534 -25.00079 -22.73718 -21.74223 -21.27953 -19.52935 -18.56532 -17.71778 -17.29104 -16.59432 -16.38057 -15.51806 -14.92129 -14.65028 -14.46024 -14.22482 -14.21047 -13.54421 -13.48944 -13.23112 -13.06990 -13.00573 -12.83798 -12.70828 -12.63019 -12.25376 -12.19383 -11.65022 -11.34998 -11.20963 -10.93295 -10.70005 -10.63009 -10.49846 -9.58247 -8.13276 -6.23198 1.45174 1.47186 1.51794 1.56007 2.01617 2.45188 2.74373 3.19242 3.49535 3.69395 3.80303 4.01496 4.11009 4.18441 4.34683 4.40872 4.48519 4.61198 4.70471 4.75304 4.83321 4.88567 4.91099 4.99555 5.04482 5.10230 5.19838 5.22137 5.32645 5.35968 5.47652 5.58813 5.74092 5.88580 6.27376 6.60395 6.84800 7.12048 7.45077 8.95880 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.034831 B = 0.006300 C = 0.005713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.699264 B = 4443.501403 C = 4900.190335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.118 4.118 3 H 0.089 0.911 4 C -0.143 4.143 5 C -0.167 4.167 6 C -0.109 4.109 7 C 0.551 3.449 8 O -0.595 6.595 9 N -0.608 5.608 10 C 0.104 3.896 11 C -0.096 4.096 12 C 0.035 3.965 13 H 0.018 0.982 14 C -0.529 4.529 15 H 0.063 0.937 16 C 0.018 3.982 17 N -0.917 5.917 18 Si 0.954 3.046 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.264 1.264 22 C 0.118 3.882 23 H 0.062 0.938 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.131 0.869 27 H 0.082 0.918 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.261 0.739 36 H 0.075 0.925 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 4.592 -3.816 14.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.136 4.136 3 H 0.108 0.892 4 C -0.181 4.181 5 C -0.170 4.170 6 C -0.166 4.166 7 C 0.341 3.659 8 O -0.477 6.477 9 N -0.339 5.339 10 C -0.019 4.019 11 C -0.135 4.135 12 C 0.016 3.984 13 H 0.036 0.964 14 C -0.567 4.567 15 H 0.081 0.919 16 C -0.182 4.182 17 N -0.555 5.555 18 Si 0.780 3.220 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.004 4.004 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.149 0.851 27 H 0.100 0.900 28 H 0.114 0.886 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.877 5.160 -3.545 14.318 hybrid contribution 1.216 -0.525 -0.225 1.344 sum -11.661 4.635 -3.770 13.103 Atomic orbital electron populations 1.21375 0.89718 1.03414 1.02571 1.22483 0.97153 0.93410 1.00588 0.89238 1.23314 1.02709 1.01878 0.90154 1.21500 0.94899 1.04787 0.95837 1.21391 0.98588 0.96140 1.00502 1.19975 0.84375 0.83078 0.78443 1.90602 1.80230 1.21941 1.54964 1.48710 1.19663 1.11844 1.53675 1.22327 0.84451 0.99440 0.95671 1.22491 0.97397 0.94215 0.99349 1.19679 0.90133 0.92497 0.96102 0.96378 1.21350 1.05584 1.25457 1.04309 0.91896 1.25695 0.96953 0.98108 0.97443 1.70062 1.14193 1.43580 1.27701 0.85608 0.78459 0.78612 0.79295 1.20582 1.21240 1.18794 1.22330 0.99611 0.79286 0.99162 0.91858 0.90760 0.90556 0.85083 0.89983 0.88630 0.91833 0.92023 0.92082 0.91752 0.93968 0.91588 0.92967 0.90669 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 9.09 71.98 0.65 -1.23 16 2 C -0.12 -2.84 5.92 -10.79 -0.06 -2.91 16 3 H 0.09 2.53 7.92 -2.38 -0.02 2.51 16 4 C -0.14 -3.43 9.55 30.60 0.29 -3.14 16 5 C -0.17 -4.74 1.90 -52.93 -0.10 -4.84 16 6 C -0.11 -2.51 8.94 71.98 0.64 -1.86 16 7 C 0.55 20.98 7.15 87.66 0.63 21.60 16 8 O -0.60 -26.51 16.83 -3.04 -0.05 -26.56 16 9 N -0.61 -23.83 3.33 -811.75 -2.70 -26.53 16 10 C 0.10 4.23 6.92 86.85 0.60 4.83 16 11 C -0.10 -4.40 5.75 31.99 0.18 -4.22 16 12 C 0.03 1.64 2.86 -10.35 -0.03 1.61 16 13 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 14 C -0.53 -27.04 8.50 25.60 0.22 -26.82 16 15 H 0.06 3.10 7.58 -2.91 -0.02 3.08 16 16 C 0.02 0.92 5.33 84.65 0.45 1.37 16 17 N -0.92 -50.62 12.11 21.45 0.26 -50.36 16 18 Si 0.95 41.44 29.54 68.60 2.03 43.47 16 19 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 22 C 0.12 4.55 5.78 86.73 0.50 5.05 16 23 H 0.06 1.04 8.14 -2.38 -0.02 1.03 16 24 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.08 1.00 7.32 -2.39 -0.02 0.99 16 26 H 0.13 2.39 8.05 -2.39 -0.02 2.37 16 27 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.09 1.61 7.09 -2.38 -0.02 1.59 16 29 H 0.06 1.58 5.21 -2.39 -0.01 1.56 16 30 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 2.49 8.00 -2.39 -0.02 2.47 16 32 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.04 2.03 8.04 -2.38 -0.02 2.01 16 34 H 0.07 3.24 7.54 -2.39 -0.02 3.22 16 35 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 36 H 0.08 2.59 5.65 -2.39 -0.01 2.58 16 37 H 0.07 2.49 7.66 -2.39 -0.02 2.47 16 Total: -1.00 -61.42 298.05 4.55 -56.87 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.04 Total: 13.66 kcal Atomic # 6 Polarization: -14.53 SS G_CDS: 3.98 Total: -10.55 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -2.44 Total: -76.89 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.05 Total: -26.56 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -61.42 4.55 -56.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704368232.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.731 kcal (2) G-P(sol) polarization free energy of solvation -61.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds