Wall clock time and date at job start Mon Mar 30 2020 03:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42891 * 109.50546 * 0.73121 * 3 2 1 5 5 C 1.53116 * 109.50351 * 240.65017 * 3 2 1 6 6 C 1.53122 * 109.16024 * 297.72050 * 5 3 2 7 7 C 1.53038 * 109.27835 * 302.34282 * 6 5 3 8 8 N 1.46850 * 109.52189 * 59.17816 * 7 6 5 9 9 C 1.46900 * 110.99667 * 174.16271 * 8 7 6 10 10 H 1.09005 * 109.47146 * 178.96417 * 9 8 7 11 11 C 1.52999 * 109.47104 * 298.95887 * 9 8 7 12 12 C 1.52997 * 109.47454 * 58.96190 * 9 8 7 13 13 C 1.50693 * 109.47265 * 174.43213 * 12 9 8 14 14 H 1.08002 * 120.00511 * 358.79167 * 13 12 9 15 15 C 1.37879 * 120.00371 * 178.79436 * 13 12 9 16 16 N 1.31507 * 120.00533 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99629 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47097 * 90.00261 * 17 15 13 19 19 H 1.48497 * 109.47007 * 330.00334 * 17 15 13 20 20 H 1.48496 * 109.47124 * 210.00257 * 17 15 13 21 21 C 1.46843 * 111.20002 * 298.26212 * 8 7 6 22 22 H 4.38511 * 5.44161 * 179.97438 * 4 1 2 23 23 H 0.96699 * 114.00440 * 299.91880 * 4 3 2 24 24 H 1.08988 * 109.52352 * 177.81438 * 5 3 2 25 25 H 1.08996 * 109.52326 * 57.61924 * 5 3 2 26 26 H 1.09002 * 109.50171 * 182.40553 * 6 5 3 27 27 H 1.08997 * 109.54145 * 62.30646 * 6 5 3 28 28 H 1.09007 * 109.46499 * 299.16650 * 7 6 5 29 29 H 1.08999 * 109.45636 * 179.19431 * 7 6 5 30 30 H 1.08998 * 109.47093 * 180.02562 * 11 9 8 31 31 H 1.08999 * 109.47273 * 300.00352 * 11 9 8 32 32 H 1.09001 * 109.47373 * 60.00407 * 11 9 8 33 33 H 1.09004 * 109.46775 * 54.43198 * 12 9 8 34 34 H 1.08999 * 109.46988 * 294.43024 * 12 9 8 35 35 H 0.97004 * 120.00649 * 180.02562 * 16 15 13 36 36 H 1.08999 * 109.46404 * 181.75745 * 21 8 7 37 37 H 1.09002 * 109.46204 * 301.72550 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1237 -1.3459 -0.0172 5 6 3.1569 0.7083 1.2580 6 6 2.6898 2.1664 1.2392 7 6 3.1991 2.8437 -0.0352 8 7 2.6824 2.1302 -1.2101 9 6 3.0368 2.8328 -2.4506 10 1 2.6579 2.2734 -3.3060 11 6 2.4157 4.2310 -2.4400 12 6 4.5588 2.9515 -2.5525 13 6 4.9278 3.5486 -3.8860 14 1 4.1554 3.7986 -4.5982 15 6 6.2517 3.7758 -4.1970 16 7 6.5738 4.2974 -5.3604 17 14 7.5879 3.3441 -2.9649 18 1 8.0334 1.9452 -3.1878 19 1 7.0525 3.4795 -1.5864 20 1 8.7398 4.2645 -3.1412 21 6 3.1565 0.7406 -1.2385 22 1 -1.0498 -0.0004 0.0002 23 1 2.8400 -1.8737 0.7418 24 1 4.2461 0.6750 1.2778 25 1 2.7601 0.2103 2.1427 26 1 3.0862 2.6868 2.1111 27 1 1.6006 2.2006 1.2591 28 1 4.2889 2.8220 -0.0474 29 1 2.8562 3.8780 -0.0586 30 1 2.6783 4.7522 -3.3606 31 1 1.3315 4.1464 -2.3674 32 1 2.7946 4.7905 -1.5846 33 1 5.0073 1.9623 -2.4607 34 1 4.9275 3.5934 -1.7525 35 1 7.5053 4.4569 -5.5794 36 1 2.7827 0.2476 -2.1359 37 1 4.2464 0.7288 -1.2450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708149645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:30 Heat of formation + Delta-G solvation = 3.829219 kcal Electronic energy + Delta-G solvation = -17579.747188 eV Core-core repulsion = 14937.429366 eV Total energy + Delta-G solvation = -2642.317821 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.74692 -37.01614 -34.23857 -32.58353 -32.15540 -30.44433 -29.17736 -27.47510 -24.48484 -23.03802 -22.58883 -21.11602 -19.14953 -17.86079 -17.10033 -16.40008 -15.57802 -14.86299 -14.70808 -14.48912 -13.85413 -13.69046 -13.34565 -13.22973 -12.54649 -12.34308 -12.17760 -11.60572 -11.34002 -11.20254 -11.03964 -10.90861 -10.75200 -10.55723 -10.42133 -10.27365 -10.06937 -9.90204 -9.78427 -9.66607 -9.17520 -8.54725 -7.66563 -6.05691 -4.03185 2.85044 2.94537 3.28493 3.36102 3.38300 3.99176 4.29120 4.43252 4.70142 4.81548 4.94047 5.13121 5.27409 5.51932 5.64713 5.71429 5.78496 5.81030 5.90987 5.93502 6.08758 6.13183 6.19461 6.25605 6.31936 6.41163 6.67535 6.75025 6.96783 7.16288 7.20632 7.49619 7.52349 7.66471 7.73105 7.86241 8.52133 8.99131 9.56976 11.07465 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.029786 B = 0.007352 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.828083 B = 3807.728323 C = 4086.241783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.183 4.183 3 C 0.245 3.755 4 O -0.549 6.549 5 C -0.140 4.140 6 C -0.114 4.114 7 C 0.044 3.956 8 N -0.530 5.530 9 C 0.093 3.907 10 H 0.077 0.923 11 C -0.130 4.130 12 C -0.041 4.041 13 C -0.513 4.513 14 H 0.075 0.925 15 C 0.068 3.932 16 N -0.902 5.902 17 Si 0.876 3.124 18 H -0.277 1.277 19 H -0.268 1.268 20 H -0.288 1.288 21 C 0.073 3.927 22 H 0.214 0.786 23 H 0.378 0.622 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.011 0.989 34 H 0.019 0.981 35 H 0.263 0.737 36 H 0.082 0.918 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.028 -6.879 14.277 18.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.183 4.183 3 C 0.204 3.796 4 O -0.354 6.354 5 C -0.178 4.178 6 C -0.152 4.152 7 C -0.084 4.084 8 N -0.255 5.255 9 C -0.014 4.014 10 H 0.095 0.905 11 C -0.187 4.187 12 C -0.080 4.080 13 C -0.551 4.551 14 H 0.093 0.907 15 C -0.133 4.133 16 N -0.541 5.541 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.193 1.193 20 H -0.214 1.214 21 C -0.056 4.056 22 H 0.231 0.769 23 H 0.225 0.775 24 H 0.096 0.904 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -9.106 -6.629 13.642 17.691 hybrid contribution 1.283 -0.391 0.984 1.663 sum -7.823 -7.019 14.626 18.010 Atomic orbital electron populations 1.24801 0.95731 0.99774 1.01146 1.23472 0.94562 1.00384 0.99918 1.18081 0.82506 0.82520 0.96493 1.86602 1.76065 1.22591 1.50109 1.22249 1.01759 0.97135 0.96621 1.21573 1.01743 0.94189 0.97690 1.22185 0.97986 0.98488 0.89697 1.62188 1.59221 1.00606 1.03474 1.21654 0.96090 0.94388 0.89272 0.90531 1.21739 0.98658 0.95916 1.02391 1.20203 0.92875 0.96474 0.98430 1.21029 0.93335 1.40954 0.99796 0.90696 1.25009 0.98639 0.94676 0.95003 1.69903 1.18039 1.44591 1.21596 0.86837 0.81799 0.78500 0.82485 1.20335 1.19262 1.21366 1.21780 0.98736 0.89440 0.95611 0.76932 0.77508 0.90438 0.91629 0.91422 0.91090 0.94146 0.90035 0.90968 0.93871 0.93525 0.97074 0.96327 0.92757 0.89978 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.46 19.25 29.55 0.57 -1.89 16 2 C -0.18 -2.59 10.60 -37.12 -0.39 -2.98 16 3 C 0.24 3.51 1.09 -93.33 -0.10 3.41 16 4 O -0.55 -7.40 12.95 -35.23 -0.46 -7.86 16 5 C -0.14 -1.74 5.11 -26.61 -0.14 -1.87 16 6 C -0.11 -1.47 5.83 -26.65 -0.16 -1.62 16 7 C 0.04 0.71 4.64 -3.83 -0.02 0.69 16 8 N -0.53 -9.26 4.23 -226.69 -0.96 -10.22 16 9 C 0.09 1.87 2.37 -67.71 -0.16 1.70 16 10 H 0.08 1.61 8.08 -51.93 -0.42 1.19 16 11 C -0.13 -2.42 8.82 37.16 0.33 -2.09 16 12 C -0.04 -0.97 2.77 -27.89 -0.08 -1.05 16 13 C -0.51 -14.35 8.94 -34.44 -0.31 -14.66 16 14 H 0.07 2.24 7.39 -52.49 -0.39 1.85 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 17 Si 0.88 21.91 27.49 -169.99 -4.67 17.24 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.45 6.51 56.52 0.37 -6.08 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 C 0.07 1.26 4.10 -3.84 -0.02 1.24 16 22 H 0.21 1.86 7.80 -54.10 -0.42 1.44 16 23 H 0.38 3.37 9.03 45.56 0.41 3.78 16 24 H 0.08 0.98 8.14 -51.94 -0.42 0.56 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.07 0.93 7.36 -51.93 -0.38 0.55 16 28 H 0.04 0.70 6.74 -51.93 -0.35 0.35 16 29 H 0.08 1.27 6.04 -51.93 -0.31 0.95 16 30 H 0.07 1.47 7.01 -51.93 -0.36 1.11 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.83 6.30 -51.93 -0.33 0.50 16 33 H 0.01 0.27 5.90 -51.93 -0.31 -0.04 16 34 H 0.02 0.44 5.81 -51.93 -0.30 0.14 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.08 1.48 8.07 -51.93 -0.42 1.06 16 37 H 0.05 1.02 6.61 -51.93 -0.34 0.68 16 LS Contribution 291.37 15.07 4.39 4.39 Total: -1.00 -31.42 291.37 -6.28 -37.70 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.79 Total: 2.97 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -0.57 Total: -17.25 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.19 Total: -37.19 kcal Atomic # 8 Polarization: -7.40 SS G_CDS: -0.46 Total: -7.86 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.42 -6.28 -37.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708149645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.527 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds