Wall clock time and date at job start Mon Mar 30 2020 03:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42891 * 109.50546 * 0.73121 * 3 2 1 5 5 C 1.53116 * 109.50351 * 240.65017 * 3 2 1 6 6 C 1.53122 * 109.16024 * 297.72050 * 5 3 2 7 7 C 1.53038 * 109.27835 * 302.34282 * 6 5 3 8 8 N 1.46850 * 109.52189 * 59.17816 * 7 6 5 9 9 C 1.46900 * 110.99667 * 174.16271 * 8 7 6 10 10 H 1.09005 * 109.47146 * 178.96417 * 9 8 7 11 11 C 1.52999 * 109.47104 * 298.95887 * 9 8 7 12 12 C 1.52997 * 109.47454 * 58.96190 * 9 8 7 13 13 C 1.50693 * 109.47265 * 174.43213 * 12 9 8 14 14 H 1.08002 * 120.00511 * 358.79167 * 13 12 9 15 15 C 1.37879 * 120.00371 * 178.79436 * 13 12 9 16 16 N 1.31507 * 120.00533 * 180.02562 * 15 13 12 17 17 Si 1.86805 * 119.99629 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47097 * 90.00261 * 17 15 13 19 19 H 1.48497 * 109.47007 * 330.00334 * 17 15 13 20 20 H 1.48496 * 109.47124 * 210.00257 * 17 15 13 21 21 C 1.46843 * 111.20002 * 298.26212 * 8 7 6 22 22 H 4.38511 * 5.44161 * 179.97438 * 4 1 2 23 23 H 0.96699 * 114.00440 * 299.91880 * 4 3 2 24 24 H 1.08988 * 109.52352 * 177.81438 * 5 3 2 25 25 H 1.08996 * 109.52326 * 57.61924 * 5 3 2 26 26 H 1.09002 * 109.50171 * 182.40553 * 6 5 3 27 27 H 1.08997 * 109.54145 * 62.30646 * 6 5 3 28 28 H 1.09007 * 109.46499 * 299.16650 * 7 6 5 29 29 H 1.08999 * 109.45636 * 179.19431 * 7 6 5 30 30 H 1.08998 * 109.47093 * 180.02562 * 11 9 8 31 31 H 1.08999 * 109.47273 * 300.00352 * 11 9 8 32 32 H 1.09001 * 109.47373 * 60.00407 * 11 9 8 33 33 H 1.09004 * 109.46775 * 54.43198 * 12 9 8 34 34 H 1.08999 * 109.46988 * 294.43024 * 12 9 8 35 35 H 0.97004 * 120.00649 * 180.02562 * 16 15 13 36 36 H 1.08999 * 109.46404 * 181.75745 * 21 8 7 37 37 H 1.09002 * 109.46204 * 301.72550 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1237 -1.3459 -0.0172 5 6 3.1569 0.7083 1.2580 6 6 2.6898 2.1664 1.2392 7 6 3.1991 2.8437 -0.0352 8 7 2.6824 2.1302 -1.2101 9 6 3.0368 2.8328 -2.4506 10 1 2.6579 2.2734 -3.3060 11 6 2.4157 4.2310 -2.4400 12 6 4.5588 2.9515 -2.5525 13 6 4.9278 3.5486 -3.8860 14 1 4.1554 3.7986 -4.5982 15 6 6.2517 3.7758 -4.1970 16 7 6.5738 4.2974 -5.3604 17 14 7.5879 3.3441 -2.9649 18 1 8.0334 1.9452 -3.1878 19 1 7.0525 3.4795 -1.5864 20 1 8.7398 4.2645 -3.1412 21 6 3.1565 0.7406 -1.2385 22 1 -1.0498 -0.0004 0.0002 23 1 2.8400 -1.8737 0.7418 24 1 4.2461 0.6750 1.2778 25 1 2.7601 0.2103 2.1427 26 1 3.0862 2.6868 2.1111 27 1 1.6006 2.2006 1.2591 28 1 4.2889 2.8220 -0.0474 29 1 2.8562 3.8780 -0.0586 30 1 2.6783 4.7522 -3.3606 31 1 1.3315 4.1464 -2.3674 32 1 2.7946 4.7905 -1.5846 33 1 5.0073 1.9623 -2.4607 34 1 4.9275 3.5934 -1.7525 35 1 7.5053 4.4569 -5.5794 36 1 2.7827 0.2476 -2.1359 37 1 4.2464 0.7288 -1.2450 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708149645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:30 Heat of formation + Delta-G solvation = -19.315969 kcal Electronic energy + Delta-G solvation = -17580.750838 eV Core-core repulsion = 14937.429366 eV Total energy + Delta-G solvation = -2643.321472 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.98204 -38.31142 -35.66588 -34.41754 -33.28870 -31.89828 -30.55007 -29.21334 -25.85980 -24.51333 -24.17632 -22.29260 -20.55788 -19.14787 -19.04807 -17.56423 -16.77562 -16.50429 -16.11881 -15.84279 -15.36727 -15.14211 -14.78267 -14.55700 -14.37128 -13.95295 -13.45913 -12.99027 -12.95983 -12.79259 -12.57435 -12.28741 -12.19098 -11.90727 -11.69512 -11.66422 -11.53157 -11.38215 -11.29845 -11.28804 -10.77919 -10.77586 -9.16449 -8.30956 -6.33360 1.29850 1.30373 1.41382 1.86843 1.94652 2.31412 2.75965 3.03541 3.33998 3.55809 3.75016 3.84442 4.08690 4.17578 4.38843 4.44220 4.45596 4.58641 4.62830 4.74324 4.78482 4.88057 4.95368 4.97322 5.06080 5.13694 5.15863 5.28538 5.36082 5.41439 5.46637 5.57047 6.06013 6.21047 6.33170 6.73000 6.74469 6.77221 7.30095 8.85314 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.029786 B = 0.007352 C = 0.006851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.828083 B = 3807.728323 C = 4086.241783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.224 4.224 3 C 0.250 3.750 4 O -0.563 6.563 5 C -0.136 4.136 6 C -0.106 4.106 7 C 0.039 3.961 8 N -0.520 5.520 9 C 0.098 3.902 10 H 0.058 0.942 11 C -0.121 4.121 12 C -0.031 4.031 13 C -0.517 4.517 14 H 0.040 0.960 15 C 0.008 3.992 16 N -0.948 5.948 17 Si 0.941 3.059 18 H -0.273 1.273 19 H -0.251 1.251 20 H -0.281 1.281 21 C 0.069 3.931 22 H 0.246 0.754 23 H 0.398 0.602 24 H 0.073 0.927 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.024 0.976 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.006 0.994 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.063 0.937 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.851 -7.561 17.275 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.225 4.225 3 C 0.209 3.791 4 O -0.372 6.372 5 C -0.174 4.174 6 C -0.144 4.144 7 C -0.089 4.089 8 N -0.244 5.244 9 C -0.010 4.010 10 H 0.077 0.923 11 C -0.178 4.178 12 C -0.069 4.069 13 C -0.556 4.556 14 H 0.059 0.941 15 C -0.189 4.189 16 N -0.589 5.589 17 Si 0.765 3.235 18 H -0.198 1.198 19 H -0.175 1.175 20 H -0.207 1.207 21 C -0.060 4.060 22 H 0.262 0.738 23 H 0.248 0.752 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.042 0.958 29 H 0.104 0.896 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.024 0.976 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.949 -7.327 16.671 20.751 hybrid contribution 1.440 -0.211 -0.021 1.455 sum -8.509 -7.537 16.651 20.161 Atomic orbital electron populations 1.25633 0.96562 0.97933 0.99145 1.23598 0.94955 1.02159 1.01765 1.17846 0.83015 0.82726 0.95517 1.86545 1.76342 1.22611 1.51672 1.22241 1.01563 0.96871 0.96702 1.21539 1.01838 0.94353 0.96621 1.22334 0.97088 0.99070 0.90387 1.62202 1.58803 1.00643 1.02777 1.21467 0.93648 0.95457 0.90457 0.92335 1.21630 1.00009 0.94696 1.01514 1.20086 0.95568 0.95492 0.95787 1.21320 0.92693 1.40480 1.01060 0.94150 1.25898 1.01302 0.94717 0.96937 1.70045 1.18759 1.46303 1.23779 0.85799 0.78717 0.78368 0.80619 1.19803 1.17466 1.20657 1.21774 0.97521 0.89647 0.97009 0.73770 0.75187 0.90845 0.88782 0.88886 0.90843 0.95781 0.89581 0.93505 0.91635 0.92402 0.97606 0.96047 0.92557 0.91839 0.94708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.80 19.25 74.32 1.43 -2.37 16 2 C -0.22 -5.80 10.60 31.13 0.33 -5.47 16 3 C 0.25 6.74 1.09 -12.55 -0.01 6.72 16 4 O -0.56 -14.33 12.95 -148.98 -1.93 -16.26 16 5 C -0.14 -2.98 5.11 30.67 0.16 -2.82 16 6 C -0.11 -2.37 5.83 30.65 0.18 -2.20 16 7 C 0.04 1.16 4.64 86.33 0.40 1.56 16 8 N -0.52 -17.74 4.23 -871.11 -3.69 -21.43 16 9 C 0.10 3.96 2.37 44.91 0.11 4.07 16 10 H 0.06 2.56 8.08 -2.38 -0.02 2.54 16 11 C -0.12 -4.48 8.82 71.98 0.63 -3.84 16 12 C -0.03 -1.46 2.77 29.84 0.08 -1.37 16 13 C -0.52 -29.85 8.94 25.60 0.23 -29.62 16 14 H 0.04 2.54 7.39 -2.91 -0.02 2.52 16 15 C 0.01 0.50 5.47 84.66 0.46 0.96 16 16 N -0.95 -59.89 13.96 21.45 0.30 -59.60 16 17 Si 0.94 45.33 27.49 68.60 1.89 47.22 16 18 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.25 -11.30 6.51 99.48 0.65 -10.65 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 21 C 0.07 2.37 4.10 86.33 0.35 2.73 16 22 H 0.25 3.24 7.80 -4.43 -0.03 3.21 16 23 H 0.40 6.19 9.03 -74.06 -0.67 5.52 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.65 7.36 -2.39 -0.02 1.64 16 28 H 0.02 0.80 6.74 -2.38 -0.02 0.78 16 29 H 0.09 2.47 6.04 -2.39 -0.01 2.46 16 30 H 0.05 1.95 7.01 -2.39 -0.02 1.93 16 31 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.06 1.98 6.30 -2.39 -0.02 1.97 16 33 H 0.01 0.28 5.90 -2.38 -0.01 0.27 16 34 H 0.02 1.01 5.81 -2.39 -0.01 0.99 16 35 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 36 H 0.06 2.35 8.07 -2.39 -0.02 2.33 16 37 H 0.03 1.31 6.61 -2.39 -0.02 1.30 16 Total: -1.00 -68.96 291.37 1.24 -67.71 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.33 Total: 14.02 kcal Atomic # 6 Polarization: -36.02 SS G_CDS: 4.35 Total: -31.67 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -3.39 Total: -81.02 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -1.93 Total: -16.26 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.89 Total: 47.22 kcal Total: -68.96 1.24 -67.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708149645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.398 kcal (2) G-P(sol) polarization free energy of solvation -68.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds