Wall clock time and date at job start Mon Mar 30 2020 03:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42895 * 109.57225 * 318.17035 * 3 2 1 5 5 C 1.53118 * 109.52332 * 78.33242 * 3 2 1 6 6 C 1.53039 * 109.27877 * 62.24789 * 5 3 2 7 7 N 1.46840 * 109.52350 * 59.18065 * 6 5 3 8 8 C 1.46898 * 111.00265 * 174.15786 * 7 6 5 9 9 H 1.08998 * 109.47589 * 178.66180 * 8 7 6 10 10 C 1.52998 * 109.47161 * 58.65748 * 8 7 6 11 11 C 1.52997 * 109.47218 * 298.66005 * 8 7 6 12 12 C 1.50704 * 109.47405 * 296.83789 * 11 8 7 13 13 H 1.08000 * 119.99615 * 355.00308 * 12 11 8 14 14 C 1.37871 * 120.00163 * 174.73359 * 12 11 8 15 15 N 1.31513 * 120.00072 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99861 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47005 * 89.99780 * 16 14 12 18 18 H 1.48502 * 109.47123 * 209.99615 * 16 14 12 19 19 H 1.48497 * 109.47357 * 329.99889 * 16 14 12 20 20 C 1.46843 * 111.20188 * 298.26038 * 7 6 5 21 21 C 1.53038 * 109.52488 * 61.73534 * 20 7 6 22 22 H 4.38642 * 5.43549 * 179.97438 * 4 1 2 23 23 H 0.96698 * 114.00266 * 300.15265 * 4 3 2 24 24 H 1.09003 * 109.49890 * 302.30685 * 5 3 2 25 25 H 1.08991 * 109.50429 * 182.19351 * 5 3 2 26 26 H 1.09001 * 109.46100 * 299.16569 * 6 5 3 27 27 H 1.09002 * 109.45804 * 179.19724 * 6 5 3 28 28 H 1.09009 * 109.46729 * 59.99788 * 10 8 7 29 29 H 1.08998 * 109.47581 * 179.97438 * 10 8 7 30 30 H 1.08998 * 109.47221 * 300.00657 * 10 8 7 31 31 H 1.08996 * 109.47520 * 176.83060 * 11 8 7 32 32 H 1.09005 * 109.46957 * 56.83453 * 11 8 7 33 33 H 0.97005 * 120.00130 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.46550 * 181.75953 * 20 7 6 35 35 H 1.09009 * 109.45935 * 301.72615 * 20 7 6 36 36 H 1.09001 * 109.50603 * 180.88237 * 21 20 7 37 37 H 1.09004 * 109.50052 * 60.77082 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1252 -1.0024 0.8979 5 6 3.1579 -0.2910 -1.4133 6 6 2.6922 0.8190 -2.3584 7 7 3.2075 2.1115 -1.8889 8 6 2.8969 3.1813 -2.8465 9 1 3.2688 4.1314 -2.4631 10 6 1.3818 3.2678 -3.0409 11 6 3.5665 2.8755 -4.1877 12 6 5.0632 2.8670 -4.0117 13 1 5.4966 3.1394 -3.0607 14 6 5.8789 2.5063 -5.0630 15 7 5.3510 2.1691 -6.2194 16 14 7.7341 2.4966 -4.8450 17 1 8.1699 1.1580 -4.3721 18 1 8.3868 2.7992 -6.1441 19 1 8.1205 3.5246 -3.8455 20 6 2.6916 2.4351 -0.5527 21 6 3.1571 1.3733 0.4463 22 1 -1.0498 -0.0001 0.0004 23 1 2.8388 -0.8800 1.8134 24 1 2.7623 -1.2481 -1.7533 25 1 4.2471 -0.3290 -1.4053 26 1 1.6027 0.8473 -2.3765 27 1 3.0671 0.6218 -3.3628 28 1 0.9047 3.4856 -2.0853 29 1 1.1513 4.0618 -3.7511 30 1 1.0099 2.3176 -3.4243 31 1 3.2904 3.6396 -4.9143 32 1 3.2371 1.8994 -4.5441 33 1 5.9249 1.9149 -6.9590 34 1 3.0658 3.4117 -0.2456 35 1 1.6020 2.4558 -0.5793 36 1 2.7610 1.6053 1.4349 37 1 4.2464 1.3616 0.4836 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708170621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:35 Heat of formation + Delta-G solvation = 3.451387 kcal Electronic energy + Delta-G solvation = -17608.575785 eV Core-core repulsion = 14966.241580 eV Total energy + Delta-G solvation = -2642.334205 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64291 -37.02144 -33.88426 -32.60638 -31.75880 -30.66879 -28.90627 -27.28119 -24.11288 -23.24407 -22.60748 -20.90606 -19.12361 -17.91214 -16.58413 -16.14165 -15.54417 -14.81245 -14.68911 -14.55136 -14.12107 -13.53785 -13.16369 -12.62494 -12.34948 -12.04035 -11.75149 -11.68097 -11.28189 -11.12246 -11.00563 -10.81856 -10.70864 -10.59146 -10.51625 -10.33345 -10.19847 -10.00551 -9.63245 -9.12599 -8.95989 -8.23894 -7.44979 -5.87226 -3.84936 2.72842 2.80500 3.41528 3.47388 3.51341 4.21074 4.32024 4.56052 4.60028 4.93832 5.06345 5.45039 5.50100 5.65205 5.69405 5.76312 5.82028 5.87230 5.97458 6.03380 6.04987 6.06821 6.22574 6.34848 6.44621 6.57504 6.64221 6.76353 6.98626 7.54229 7.57004 7.58131 7.69954 7.92562 8.02746 8.14070 8.58940 9.20807 9.76831 11.24730 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028053 B = 0.007438 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.882058 B = 3763.677435 C = 4225.251790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.197 4.197 3 C 0.240 3.760 4 O -0.548 6.548 5 C -0.096 4.096 6 C 0.058 3.942 7 N -0.508 5.508 8 C 0.087 3.913 9 H 0.070 0.930 10 C -0.184 4.184 11 C 0.027 3.973 12 C -0.489 4.489 13 H 0.060 0.940 14 C 0.051 3.949 15 N -0.904 5.904 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.291 1.291 19 H -0.275 1.275 20 C 0.054 3.946 21 C -0.133 4.133 22 H 0.215 0.785 23 H 0.374 0.626 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.026 0.974 27 H 0.100 0.900 28 H 0.039 0.961 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.015 0.985 32 H 0.024 0.976 33 H 0.257 0.743 34 H 0.073 0.927 35 H 0.029 0.971 36 H 0.063 0.937 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.459 -2.523 12.661 15.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.198 4.198 3 C 0.200 3.800 4 O -0.354 6.354 5 C -0.134 4.134 6 C -0.070 4.070 7 N -0.232 5.232 8 C -0.020 4.020 9 H 0.088 0.912 10 C -0.243 4.243 11 C -0.010 4.010 12 C -0.527 4.527 13 H 0.079 0.921 14 C -0.148 4.148 15 N -0.545 5.545 16 Si 0.718 3.282 17 H -0.209 1.209 18 H -0.217 1.217 19 H -0.200 1.200 20 C -0.075 4.075 21 C -0.171 4.171 22 H 0.232 0.768 23 H 0.221 0.779 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.044 0.956 27 H 0.118 0.882 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.599 -2.832 11.970 14.458 hybrid contribution -0.449 0.225 0.513 0.718 sum -8.049 -2.608 12.483 15.080 Atomic orbital electron populations 1.24934 0.95873 1.00651 1.00167 1.24007 0.95169 1.00028 1.00578 1.18308 0.81472 0.88245 0.92016 1.86647 1.75804 1.51395 1.21528 1.21561 1.02924 0.98852 0.90076 1.22088 0.96404 0.88701 0.99765 1.62064 1.58177 1.02195 1.00737 1.21896 0.91220 0.93344 0.95584 0.91215 1.22522 0.99733 1.01725 1.00321 1.19248 0.95622 0.97088 0.89020 1.21153 0.91039 1.43473 0.97072 0.92133 1.24993 0.98384 0.96024 0.95441 1.69963 1.34827 1.47390 1.02357 0.86632 0.86246 0.78266 0.77035 1.20870 1.21676 1.20047 1.22024 0.96950 0.97899 0.90606 1.22233 1.02961 0.93551 0.98316 0.76768 0.77890 0.91259 0.89134 0.95554 0.88209 0.94189 0.92557 0.92957 0.96637 0.95813 0.93332 0.90893 0.95336 0.91836 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.45 19.25 29.55 0.57 -1.88 16 2 C -0.20 -2.79 9.86 -37.12 -0.37 -3.15 16 3 C 0.24 3.49 1.10 -93.28 -0.10 3.39 16 4 O -0.55 -7.43 12.96 -35.23 -0.46 -7.89 16 5 C -0.10 -1.61 5.23 -26.65 -0.14 -1.75 16 6 C 0.06 1.07 4.42 -3.84 -0.02 1.06 16 7 N -0.51 -9.64 4.30 -226.70 -0.98 -10.61 16 8 C 0.09 1.77 2.31 -67.72 -0.16 1.61 16 9 H 0.07 1.43 8.07 -51.93 -0.42 1.01 16 10 C -0.18 -3.20 8.50 37.16 0.32 -2.89 16 11 C 0.03 0.68 4.25 -27.88 -0.12 0.56 16 12 C -0.49 -13.57 8.79 -34.44 -0.30 -13.88 16 13 H 0.06 1.68 7.75 -52.49 -0.41 1.28 16 14 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 15 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 16 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 17 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 C 0.05 0.84 4.83 -3.84 -0.02 0.83 16 21 C -0.13 -1.84 5.20 -26.65 -0.14 -1.98 16 22 H 0.22 1.84 7.80 -54.10 -0.42 1.41 16 23 H 0.37 3.46 9.03 45.56 0.41 3.87 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 26 H 0.03 0.47 5.78 -51.93 -0.30 0.17 16 27 H 0.10 2.12 5.98 -51.93 -0.31 1.81 16 28 H 0.04 0.62 6.67 -51.92 -0.35 0.28 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.92 6.51 -51.93 -0.34 0.58 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.02 0.63 6.15 -51.93 -0.32 0.31 16 33 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 34 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.03 0.44 5.91 -51.92 -0.31 0.14 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -30.94 295.49 -6.68 -37.62 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.85 Total: 2.48 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -0.57 Total: -16.71 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: -0.24 Total: -37.02 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.46 Total: -7.89 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.94 -6.68 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708170621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.073 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds