Wall clock time and date at job start Mon Mar 30 2020 03:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 O 1.42895 * 109.57225 * 318.17035 * 3 2 1 5 5 C 1.53118 * 109.52332 * 78.33242 * 3 2 1 6 6 C 1.53039 * 109.27877 * 62.24789 * 5 3 2 7 7 N 1.46840 * 109.52350 * 59.18065 * 6 5 3 8 8 C 1.46898 * 111.00265 * 174.15786 * 7 6 5 9 9 H 1.08998 * 109.47589 * 178.66180 * 8 7 6 10 10 C 1.52998 * 109.47161 * 58.65748 * 8 7 6 11 11 C 1.52997 * 109.47218 * 298.66005 * 8 7 6 12 12 C 1.50704 * 109.47405 * 296.83789 * 11 8 7 13 13 H 1.08000 * 119.99615 * 355.00308 * 12 11 8 14 14 C 1.37871 * 120.00163 * 174.73359 * 12 11 8 15 15 N 1.31513 * 120.00072 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99861 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47005 * 89.99780 * 16 14 12 18 18 H 1.48502 * 109.47123 * 209.99615 * 16 14 12 19 19 H 1.48497 * 109.47357 * 329.99889 * 16 14 12 20 20 C 1.46843 * 111.20188 * 298.26038 * 7 6 5 21 21 C 1.53038 * 109.52488 * 61.73534 * 20 7 6 22 22 H 4.38642 * 5.43549 * 179.97438 * 4 1 2 23 23 H 0.96698 * 114.00266 * 300.15265 * 4 3 2 24 24 H 1.09003 * 109.49890 * 302.30685 * 5 3 2 25 25 H 1.08991 * 109.50429 * 182.19351 * 5 3 2 26 26 H 1.09001 * 109.46100 * 299.16569 * 6 5 3 27 27 H 1.09002 * 109.45804 * 179.19724 * 6 5 3 28 28 H 1.09009 * 109.46729 * 59.99788 * 10 8 7 29 29 H 1.08998 * 109.47581 * 179.97438 * 10 8 7 30 30 H 1.08998 * 109.47221 * 300.00657 * 10 8 7 31 31 H 1.08996 * 109.47520 * 176.83060 * 11 8 7 32 32 H 1.09005 * 109.46957 * 56.83453 * 11 8 7 33 33 H 0.97005 * 120.00130 * 180.02562 * 15 14 12 34 34 H 1.09000 * 109.46550 * 181.75953 * 20 7 6 35 35 H 1.09009 * 109.45935 * 301.72615 * 20 7 6 36 36 H 1.09001 * 109.50603 * 180.88237 * 21 20 7 37 37 H 1.09004 * 109.50052 * 60.77082 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1252 -1.0024 0.8979 5 6 3.1579 -0.2910 -1.4133 6 6 2.6922 0.8190 -2.3584 7 7 3.2075 2.1115 -1.8889 8 6 2.8969 3.1813 -2.8465 9 1 3.2688 4.1314 -2.4631 10 6 1.3818 3.2678 -3.0409 11 6 3.5665 2.8755 -4.1877 12 6 5.0632 2.8670 -4.0117 13 1 5.4966 3.1394 -3.0607 14 6 5.8789 2.5063 -5.0630 15 7 5.3510 2.1691 -6.2194 16 14 7.7341 2.4966 -4.8450 17 1 8.1699 1.1580 -4.3721 18 1 8.3868 2.7992 -6.1441 19 1 8.1205 3.5246 -3.8455 20 6 2.6916 2.4351 -0.5527 21 6 3.1571 1.3733 0.4463 22 1 -1.0498 -0.0001 0.0004 23 1 2.8388 -0.8800 1.8134 24 1 2.7623 -1.2481 -1.7533 25 1 4.2471 -0.3290 -1.4053 26 1 1.6027 0.8473 -2.3765 27 1 3.0671 0.6218 -3.3628 28 1 0.9047 3.4856 -2.0853 29 1 1.1513 4.0618 -3.7511 30 1 1.0099 2.3176 -3.4243 31 1 3.2904 3.6396 -4.9143 32 1 3.2371 1.8994 -4.5441 33 1 5.9249 1.9149 -6.9590 34 1 3.0658 3.4117 -0.2456 35 1 1.6020 2.4558 -0.5793 36 1 2.7610 1.6053 1.4349 37 1 4.2464 1.3616 0.4836 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708170621.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:35 Heat of formation + Delta-G solvation = -18.576165 kcal Electronic energy + Delta-G solvation = -17609.530971 eV Core-core repulsion = 14966.241580 eV Total energy + Delta-G solvation = -2643.289392 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92496 -38.33813 -35.42611 -34.26572 -33.08242 -31.98295 -30.39175 -29.09213 -25.58187 -24.91776 -24.06001 -22.20229 -20.60170 -19.08880 -18.31822 -17.66462 -16.88301 -16.48581 -16.11642 -15.83816 -15.62343 -14.89003 -14.74251 -14.00486 -13.96517 -13.69893 -13.27807 -13.16549 -12.92938 -12.63130 -12.52231 -12.35478 -12.31767 -12.01430 -11.89883 -11.76002 -11.51068 -11.45858 -11.07735 -10.97169 -10.76698 -10.44941 -8.90941 -8.08168 -6.12402 1.42974 1.44311 1.54476 1.75693 1.81734 2.48976 3.05030 3.26746 3.27461 3.35673 3.78588 3.87193 4.13850 4.32316 4.33558 4.41948 4.50211 4.59759 4.61238 4.76712 4.86157 4.87352 4.93075 5.03262 5.12485 5.14857 5.19112 5.24103 5.36260 5.51761 5.72118 5.91514 6.32525 6.43320 6.54534 6.61527 6.75310 7.01195 7.53268 9.03901 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.028053 B = 0.007438 C = 0.006625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.882058 B = 3763.677435 C = 4225.251790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.241 4.241 3 C 0.248 3.752 4 O -0.559 6.559 5 C -0.096 4.096 6 C 0.070 3.930 7 N -0.527 5.527 8 C 0.095 3.905 9 H 0.069 0.931 10 C -0.173 4.173 11 C 0.033 3.967 12 C -0.496 4.496 13 H 0.058 0.942 14 C -0.004 4.004 15 N -0.941 5.941 16 Si 0.954 3.046 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.265 1.265 20 C 0.056 3.944 21 C -0.127 4.127 22 H 0.249 0.751 23 H 0.394 0.606 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.046 0.954 31 H -0.009 1.009 32 H 0.001 0.999 33 H 0.258 0.742 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.095 0.905 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.277 -2.320 14.888 17.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.242 4.242 3 C 0.207 3.793 4 O -0.368 6.368 5 C -0.134 4.134 6 C -0.058 4.058 7 N -0.251 5.251 8 C -0.014 4.014 9 H 0.087 0.913 10 C -0.232 4.232 11 C -0.005 4.005 12 C -0.534 4.534 13 H 0.076 0.924 14 C -0.200 4.200 15 N -0.583 5.583 16 Si 0.780 3.220 17 H -0.205 1.205 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.072 4.072 21 C -0.165 4.165 22 H 0.266 0.734 23 H 0.244 0.756 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.009 0.991 32 H 0.019 0.981 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.113 0.887 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.423 -2.625 14.231 16.744 hybrid contribution -0.255 0.134 -0.163 0.331 sum -8.678 -2.491 14.069 16.717 Atomic orbital electron populations 1.25772 0.96657 0.98512 0.97903 1.24015 0.95432 1.02053 1.02666 1.17965 0.82217 0.88559 0.90558 1.86591 1.76078 1.51169 1.22931 1.21466 1.01729 0.98222 0.92021 1.21855 0.96554 0.89260 0.98173 1.61956 1.59363 1.01787 1.02016 1.21616 0.92767 0.93652 0.93318 0.91291 1.22376 0.97441 1.01596 1.01768 1.19110 0.94967 0.94955 0.91427 1.21466 0.92549 1.42646 0.96769 0.92364 1.25816 1.03091 0.95882 0.95208 1.70090 1.36444 1.48582 1.03178 0.85606 0.80710 0.78456 0.77189 1.20518 1.21299 1.18978 1.22088 0.97397 0.98938 0.88797 1.22198 1.02362 0.92639 0.99271 0.73447 0.75606 0.91154 0.91065 0.94744 0.92238 0.91600 0.92250 0.93524 0.99090 0.98121 0.93341 0.90119 0.94468 0.88661 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.58 19.25 74.32 1.43 -2.15 16 2 C -0.24 -6.16 9.86 31.13 0.31 -5.85 16 3 C 0.25 6.80 1.10 -12.52 -0.01 6.78 16 4 O -0.56 -14.13 12.96 -148.98 -1.93 -16.06 16 5 C -0.10 -3.24 5.23 30.65 0.16 -3.08 16 6 C 0.07 2.61 4.42 86.33 0.38 2.99 16 7 N -0.53 -19.84 4.30 -871.14 -3.75 -23.59 16 8 C 0.09 3.84 2.31 44.91 0.10 3.94 16 9 H 0.07 2.79 8.07 -2.39 -0.02 2.77 16 10 C -0.17 -5.81 8.50 71.98 0.61 -5.20 16 11 C 0.03 1.69 4.25 29.85 0.13 1.82 16 12 C -0.50 -28.16 8.79 25.60 0.22 -27.93 16 13 H 0.06 3.27 7.75 -2.91 -0.02 3.25 16 14 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 15 N -0.94 -58.02 13.29 21.44 0.28 -57.73 16 16 Si 0.95 45.85 29.54 68.60 2.03 47.88 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C 0.06 1.63 4.83 86.33 0.42 2.04 16 21 C -0.13 -3.23 5.20 30.65 0.16 -3.07 16 22 H 0.25 3.05 7.80 -4.43 -0.03 3.02 16 23 H 0.39 6.26 9.03 -74.06 -0.67 5.59 16 24 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 25 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.03 1.22 5.78 -2.39 -0.01 1.20 16 27 H 0.06 2.68 5.98 -2.39 -0.01 2.66 16 28 H 0.07 1.87 6.67 -2.38 -0.02 1.86 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.60 6.51 -2.39 -0.02 1.59 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H 0.00 0.03 6.15 -2.38 -0.01 0.02 16 33 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 34 H 0.08 2.23 8.07 -2.39 -0.02 2.21 16 35 H 0.04 1.04 5.91 -2.38 -0.01 1.02 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -67.46 295.49 1.38 -66.08 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.38 Total: 12.93 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 4.37 Total: -29.49 kcal Atomic # 7 Polarization: -77.86 SS G_CDS: -3.46 Total: -81.33 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -1.93 Total: -16.06 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -67.46 1.38 -66.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708170621.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.501 kcal (2) G-P(sol) polarization free energy of solvation -67.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds