Wall clock time and date at job start Mon Mar 30 2020 03:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46806 * 2 1 4 4 C 1.50699 * 109.47023 * 239.99562 * 2 1 3 5 5 H 1.08002 * 119.99968 * 239.99619 * 4 2 1 6 6 C 1.37880 * 120.00207 * 60.00741 * 4 2 1 7 7 N 1.31512 * 119.99482 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00209 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47436 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47254 * 119.99366 * 8 6 4 11 11 H 1.48497 * 109.47185 * 239.99621 * 8 6 4 12 12 N 1.46503 * 109.46637 * 120.00024 * 2 1 3 13 13 C 1.34777 * 119.99726 * 274.99381 * 12 2 1 14 14 O 1.21285 * 120.00189 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00211 * 180.02562 * 13 12 2 16 16 C 1.52301 * 115.91418 * 111.83145 * 15 13 12 17 17 C 1.51880 * 115.30014 * 180.02562 * 15 13 12 18 18 H 1.09007 * 117.20449 * 359.24258 * 17 15 13 19 19 C 1.52709 * 120.64634 * 149.11371 * 17 15 13 20 20 C 1.52880 * 110.04095 * 338.33040 * 19 17 15 21 21 C 1.53300 * 108.57964 * 54.58743 * 20 19 17 22 22 C 1.52070 * 114.63476 * 325.58979 * 15 13 12 23 23 H 1.08997 * 109.47111 * 300.00439 * 1 2 3 24 24 H 1.09000 * 109.47067 * 60.00735 * 1 2 3 25 25 H 1.09003 * 109.47242 * 179.97438 * 1 2 3 26 26 H 0.97007 * 120.00063 * 180.02562 * 7 6 4 27 27 H 0.96993 * 120.00149 * 95.00534 * 12 2 1 28 28 H 1.08997 * 117.53694 * 213.16826 * 16 15 13 29 29 H 1.09000 * 117.53558 * 358.33897 * 16 15 13 30 30 H 1.09002 * 109.35928 * 218.18737 * 19 17 15 31 31 H 1.08994 * 109.35374 * 98.46953 * 19 17 15 32 32 H 1.08991 * 109.61947 * 174.31808 * 20 19 17 33 33 H 1.09007 * 109.61510 * 294.85916 * 20 19 17 34 34 H 1.08993 * 109.61844 * 45.29131 * 21 20 19 35 35 H 1.09004 * 109.61052 * 165.83093 * 21 20 19 36 36 H 1.09008 * 109.27075 * 74.10113 * 22 15 13 37 37 H 1.08999 * 109.27269 * 314.63705 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1484 -2.2859 -3.6037 10 1 1.1679 -1.5868 -4.8164 11 1 3.1474 -0.1861 -4.8160 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8583 1.1585 2.4117 15 6 2.6498 -0.7284 3.5876 16 6 4.0241 -0.3026 4.0870 17 6 2.7527 0.1303 4.8361 18 1 2.4719 1.1795 4.7439 19 6 2.5521 -0.4820 6.2206 20 6 1.7550 -1.7817 6.1082 21 6 2.4669 -2.7068 5.1145 22 6 2.2215 -2.1833 3.6992 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7084 1.1608 -3.4845 27 1 2.2490 -1.6317 1.1527 28 1 4.6492 -1.0642 4.5529 29 1 4.5560 0.4562 3.5131 30 1 2.0088 0.2216 6.8516 31 1 3.5240 -0.6916 6.6672 32 1 1.7022 -2.2642 7.0841 33 1 0.7489 -1.5642 5.7497 34 1 3.5369 -2.7128 5.3219 35 1 2.0682 -3.7173 5.2051 36 1 2.7931 -2.7820 2.9899 37 1 1.1602 -2.2649 3.4646 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710527512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:40 Heat of formation + Delta-G solvation = -38.766717 kcal Electronic energy + Delta-G solvation = -17275.421295 eV Core-core repulsion = 14631.256375 eV Total energy + Delta-G solvation = -2644.164920 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.28349 -37.68377 -34.79215 -32.91976 -32.43232 -30.85442 -28.73637 -25.25834 -24.79200 -23.60294 -21.31307 -20.94551 -19.57159 -18.27059 -17.36542 -15.94308 -15.25293 -14.77077 -14.40593 -14.28975 -13.88353 -13.82352 -13.34354 -13.04886 -12.48437 -12.29147 -12.01598 -11.75836 -11.62425 -11.09059 -10.99754 -10.92302 -10.86519 -10.69228 -10.44721 -10.28423 -10.22600 -9.78934 -9.54490 -9.01773 -8.87113 -8.53242 -7.85968 -6.10936 -4.20018 3.22325 3.24588 3.32035 3.34948 3.98769 4.13929 4.38205 4.71436 4.74393 4.85628 5.10603 5.13579 5.21459 5.28282 5.45294 5.51258 5.58268 5.66445 5.85740 5.88005 5.94038 6.09669 6.17804 6.21337 6.28030 6.32538 6.49343 6.85154 6.99734 7.17903 7.50340 7.59965 7.72252 7.94369 8.17175 8.72349 8.81173 9.19028 9.47969 10.95152 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042485 B = 0.005734 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.895598 B = 4881.625347 C = 5062.365037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.047 0.953 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.704 5.704 13 C 0.532 3.468 14 O -0.557 6.557 15 C -0.140 4.140 16 C -0.159 4.159 17 C -0.121 4.121 18 H 0.115 0.885 19 C -0.087 4.087 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.082 4.082 23 H 0.014 0.986 24 H 0.090 0.910 25 H 0.026 0.974 26 H 0.263 0.737 27 H 0.388 0.612 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -6.916 14.354 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.065 0.935 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.351 5.351 13 C 0.316 3.684 14 O -0.436 6.436 15 C -0.143 4.143 16 C -0.196 4.196 17 C -0.139 4.139 18 H 0.133 0.867 19 C -0.124 4.124 20 C -0.159 4.159 21 C -0.156 4.156 22 C -0.120 4.120 23 H 0.033 0.967 24 H 0.108 0.892 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.221 0.779 28 H 0.117 0.883 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.106 -5.943 14.191 15.696 hybrid contribution 0.391 -0.867 -1.055 1.421 sum 3.497 -6.810 13.136 15.204 Atomic orbital electron populations 1.22070 0.98493 0.99074 1.00858 1.18745 0.91026 0.93966 0.80116 0.93497 1.21260 1.32284 1.13152 0.90332 0.92062 1.24896 0.94838 0.94964 0.99070 1.69920 1.35970 1.22524 1.23730 0.86390 0.78598 0.79521 0.82570 1.19743 1.20870 1.20883 1.46462 1.64741 1.13563 1.10301 1.19530 0.78147 0.86811 0.83876 1.90631 1.51733 1.16181 1.85068 1.21139 1.02076 0.96232 0.94846 1.23162 0.89570 1.03242 1.03640 1.22233 1.00860 0.99945 0.90904 0.86741 1.21065 1.00210 0.96675 0.94472 1.21587 0.99700 0.95661 0.98905 1.21588 1.00685 0.98662 0.94637 1.20818 1.01894 0.91952 0.97320 0.96688 0.89177 0.95496 0.92654 0.77902 0.88318 0.88587 0.91550 0.91648 0.92047 0.91539 0.91805 0.91640 0.91083 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.40 16 2 C 0.26 6.89 2.56 -69.08 -0.18 6.71 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.35 8.73 -34.44 -0.30 -14.65 16 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.24 11.32 55.43 0.63 -24.62 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.70 -15.26 4.96 -54.93 -0.27 -15.54 16 13 C 0.53 11.16 7.23 -10.98 -0.08 11.08 16 14 O -0.56 -13.90 15.66 5.55 0.09 -13.81 16 15 C -0.14 -2.18 2.48 -157.06 -0.39 -2.57 16 16 C -0.16 -2.18 9.29 -26.68 -0.25 -2.43 16 17 C -0.12 -1.71 5.63 -90.93 -0.51 -2.23 16 18 H 0.11 1.87 7.43 -51.92 -0.39 1.48 16 19 C -0.09 -0.94 5.84 -26.94 -0.16 -1.10 16 20 C -0.12 -1.23 5.92 -26.64 -0.16 -1.39 16 21 C -0.12 -1.20 5.70 -26.64 -0.15 -1.35 16 22 C -0.08 -1.05 4.75 -27.27 -0.13 -1.18 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.39 7.39 7.54 -40.82 -0.31 7.08 16 28 H 0.10 1.11 7.26 -51.93 -0.38 0.73 16 29 H 0.10 1.44 8.14 -51.93 -0.42 1.01 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.62 8.05 -51.93 -0.42 0.20 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.75 8.04 -51.93 -0.42 0.33 16 34 H 0.06 0.61 7.11 -51.93 -0.37 0.24 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.85 7.81 -51.92 -0.41 0.44 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 295.43 15.07 4.45 4.45 Total: -1.00 -30.55 295.43 -8.07 -38.62 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.89 Total: 5.89 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.05 Total: -10.81 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.35 Total: -40.15 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.09 Total: -13.81 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.55 -8.07 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710527512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.146 kcal (2) G-P(sol) polarization free energy of solvation -30.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds