Wall clock time and date at job start Mon Mar 30 2020 03:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.46806 * 2 1 4 4 C 1.50699 * 109.47023 * 239.99562 * 2 1 3 5 5 H 1.08002 * 119.99968 * 239.99619 * 4 2 1 6 6 C 1.37880 * 120.00207 * 60.00741 * 4 2 1 7 7 N 1.31512 * 119.99482 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00209 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47436 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47254 * 119.99366 * 8 6 4 11 11 H 1.48497 * 109.47185 * 239.99621 * 8 6 4 12 12 N 1.46503 * 109.46637 * 120.00024 * 2 1 3 13 13 C 1.34777 * 119.99726 * 274.99381 * 12 2 1 14 14 O 1.21285 * 120.00189 * 0.02562 * 13 12 2 15 15 C 1.50703 * 120.00211 * 180.02562 * 13 12 2 16 16 C 1.52301 * 115.91418 * 111.83145 * 15 13 12 17 17 C 1.51880 * 115.30014 * 180.02562 * 15 13 12 18 18 H 1.09007 * 117.20449 * 359.24258 * 17 15 13 19 19 C 1.52709 * 120.64634 * 149.11371 * 17 15 13 20 20 C 1.52880 * 110.04095 * 338.33040 * 19 17 15 21 21 C 1.53300 * 108.57964 * 54.58743 * 20 19 17 22 22 C 1.52070 * 114.63476 * 325.58979 * 15 13 12 23 23 H 1.08997 * 109.47111 * 300.00439 * 1 2 3 24 24 H 1.09000 * 109.47067 * 60.00735 * 1 2 3 25 25 H 1.09003 * 109.47242 * 179.97438 * 1 2 3 26 26 H 0.97007 * 120.00063 * 180.02562 * 7 6 4 27 27 H 0.96993 * 120.00149 * 95.00534 * 12 2 1 28 28 H 1.08997 * 117.53694 * 213.16826 * 16 15 13 29 29 H 1.09000 * 117.53558 * 358.33897 * 16 15 13 30 30 H 1.09002 * 109.35928 * 218.18737 * 19 17 15 31 31 H 1.08994 * 109.35374 * 98.46953 * 19 17 15 32 32 H 1.08991 * 109.61947 * 174.31808 * 20 19 17 33 33 H 1.09007 * 109.61510 * 294.85916 * 20 19 17 34 34 H 1.08993 * 109.61844 * 45.29131 * 21 20 19 35 35 H 1.09004 * 109.61052 * 165.83093 * 21 20 19 36 36 H 1.09008 * 109.27075 * 74.10113 * 22 15 13 37 37 H 1.08999 * 109.27269 * 314.63705 * 22 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.1484 -2.2859 -3.6037 10 1 1.1679 -1.5868 -4.8164 11 1 3.1474 -0.1861 -4.8160 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8583 1.1585 2.4117 15 6 2.6498 -0.7284 3.5876 16 6 4.0241 -0.3026 4.0870 17 6 2.7527 0.1303 4.8361 18 1 2.4719 1.1795 4.7439 19 6 2.5521 -0.4820 6.2206 20 6 1.7550 -1.7817 6.1082 21 6 2.4669 -2.7068 5.1145 22 6 2.2215 -2.1833 3.6992 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5137 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 0.7084 1.1608 -3.4845 27 1 2.2490 -1.6317 1.1527 28 1 4.6492 -1.0642 4.5529 29 1 4.5560 0.4562 3.5131 30 1 2.0088 0.2216 6.8516 31 1 3.5240 -0.6916 6.6672 32 1 1.7022 -2.2642 7.0841 33 1 0.7489 -1.5642 5.7497 34 1 3.5369 -2.7128 5.3219 35 1 2.0682 -3.7173 5.2051 36 1 2.7931 -2.7820 2.9899 37 1 1.1602 -2.2649 3.4646 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710527512.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:39 Heat of formation + Delta-G solvation = -57.727663 kcal Electronic energy + Delta-G solvation = -17276.243503 eV Core-core repulsion = 14631.256375 eV Total energy + Delta-G solvation = -2644.987128 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.62403 -39.20567 -36.74783 -34.39743 -33.92915 -32.03862 -30.57294 -27.38938 -25.87812 -24.90686 -22.65843 -22.33362 -21.22525 -19.68222 -18.73467 -17.78651 -17.18171 -16.38198 -15.94075 -15.49674 -15.20271 -14.82530 -14.64445 -14.46155 -14.19266 -13.89202 -13.46042 -13.04511 -12.99530 -12.88371 -12.84972 -12.67036 -12.31980 -12.13321 -11.88223 -11.70673 -11.40775 -11.14466 -10.87551 -10.66893 -10.62138 -10.48371 -9.78873 -8.20186 -6.38402 1.43339 1.43888 1.56632 1.65467 2.32432 2.56961 2.82963 3.10237 3.60965 3.72779 3.85559 3.93359 4.15566 4.32975 4.38774 4.56635 4.62869 4.69645 4.76239 4.81827 4.86746 5.01394 5.03410 5.05456 5.16509 5.26865 5.30953 5.35290 5.39966 5.43582 5.55235 5.58309 5.64663 5.86972 6.06003 6.69394 6.93501 7.29223 7.52168 8.86693 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.042485 B = 0.005734 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.895598 B = 4881.625347 C = 5062.365037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.269 3.731 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.976 3.024 9 H -0.259 1.259 10 H -0.277 1.277 11 H -0.283 1.283 12 N -0.699 5.699 13 C 0.523 3.477 14 O -0.606 6.606 15 C -0.148 4.148 16 C -0.143 4.143 17 C -0.121 4.121 18 H 0.082 0.918 19 C -0.082 4.082 20 C -0.121 4.121 21 C -0.112 4.112 22 C -0.081 4.081 23 H 0.008 0.992 24 H 0.068 0.932 25 H 0.042 0.958 26 H 0.266 0.734 27 H 0.404 0.596 28 H 0.137 0.863 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.719 -9.769 15.553 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.801 3.199 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.209 1.209 12 N -0.347 5.347 13 C 0.310 3.690 14 O -0.489 6.489 15 C -0.151 4.151 16 C -0.180 4.180 17 C -0.140 4.140 18 H 0.100 0.900 19 C -0.119 4.119 20 C -0.158 4.158 21 C -0.149 4.149 22 C -0.118 4.118 23 H 0.027 0.973 24 H 0.086 0.914 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.239 0.761 28 H 0.155 0.845 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.427 -8.835 15.416 18.311 hybrid contribution -0.034 0.126 -1.415 1.420 sum 4.393 -8.710 14.001 17.064 Atomic orbital electron populations 1.21887 0.98295 0.99489 0.99420 1.18366 0.91167 0.91786 0.82147 0.98820 1.21552 1.32630 1.13548 0.90710 0.90860 1.25853 0.94804 0.95577 1.02463 1.70069 1.37007 1.24021 1.24633 0.85232 0.78126 0.78480 0.78100 1.18264 1.20252 1.20910 1.46230 1.64766 1.14163 1.09506 1.20556 0.76879 0.86431 0.85093 1.90600 1.53677 1.18640 1.85995 1.21114 1.03808 0.97694 0.92475 1.23286 0.88974 1.03264 1.02522 1.22305 1.00898 0.98377 0.92443 0.89999 1.21111 1.01834 0.97022 0.91907 1.21609 0.98559 0.95387 1.00294 1.21597 1.01818 0.99305 0.92166 1.20872 1.01159 0.89820 0.99950 0.97290 0.91369 0.93935 0.92485 0.76088 0.84493 0.90521 0.91107 0.89192 0.89401 0.93301 0.90173 0.89723 0.90055 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.00 9.26 71.98 0.67 -6.34 16 2 C 0.27 14.61 2.56 44.25 0.11 14.72 16 3 H -0.01 -0.39 7.58 -2.39 -0.02 -0.41 16 4 C -0.55 -29.70 8.73 25.60 0.22 -29.48 16 5 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 6 C 0.01 0.71 5.30 84.66 0.45 1.15 16 7 N -0.92 -53.79 11.32 21.45 0.24 -53.55 16 8 Si 0.98 42.47 29.54 68.60 2.03 44.50 16 9 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 10 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 N -0.70 -30.97 4.96 -446.09 -2.21 -33.19 16 13 C 0.52 22.68 7.23 87.66 0.63 23.32 16 14 O -0.61 -32.16 15.66 -3.04 -0.05 -32.21 16 15 C -0.15 -4.51 2.48 -53.83 -0.13 -4.64 16 16 C -0.14 -3.70 9.29 30.63 0.28 -3.41 16 17 C -0.12 -3.35 5.63 -11.00 -0.06 -3.42 16 18 H 0.08 2.80 7.43 -2.38 -0.02 2.78 16 19 C -0.08 -1.53 5.84 30.46 0.18 -1.35 16 20 C -0.12 -2.05 5.92 30.65 0.18 -1.87 16 21 C -0.11 -1.81 5.70 30.65 0.17 -1.63 16 22 C -0.08 -1.88 4.75 30.25 0.14 -1.73 16 23 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 24 H 0.07 3.91 6.07 -2.39 -0.01 3.90 16 25 H 0.04 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.27 14.62 8.31 -92.70 -0.77 13.85 16 27 H 0.40 15.22 7.54 -92.71 -0.70 14.52 16 28 H 0.14 2.50 7.26 -2.39 -0.02 2.48 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.29 8.05 -2.39 -0.02 1.28 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.05 1.00 8.04 -2.38 -0.02 0.98 16 34 H 0.08 1.09 7.11 -2.39 -0.02 1.07 16 35 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.08 1.71 7.81 -2.38 -0.02 1.69 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -69.37 295.43 3.21 -66.16 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.35 Total: 22.96 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 2.85 Total: -14.67 kcal Atomic # 7 Polarization: -84.76 SS G_CDS: -1.97 Total: -86.73 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.05 Total: -32.21 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -69.37 3.21 -66.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710527512.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.432 kcal (2) G-P(sol) polarization free energy of solvation -69.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds