Wall clock time and date at job start Mon Mar 30 2020 03:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47038 * 2 1 4 4 C 1.37093 * 119.99966 * 113.21945 * 3 2 1 5 5 H 1.08005 * 119.99563 * 206.98603 * 4 3 2 6 6 C 1.38952 * 120.00308 * 26.98982 * 4 3 2 7 7 N 1.31412 * 119.99513 * 21.53274 * 6 4 3 8 8 Si 1.86790 * 120.00085 * 201.53266 * 6 4 3 9 9 H 1.48505 * 109.47415 * 89.99994 * 8 6 4 10 10 H 1.48503 * 109.47389 * 209.99719 * 8 6 4 11 11 H 1.48503 * 109.47690 * 330.00211 * 8 6 4 12 12 C 1.34776 * 119.99703 * 293.49187 * 3 2 1 13 13 O 1.21297 * 120.00091 * 186.97027 * 12 3 2 14 14 C 1.50700 * 120.00255 * 6.97561 * 12 3 2 15 15 C 1.52306 * 115.91292 * 100.19748 * 14 12 3 16 16 C 1.52072 * 115.93105 * 168.48376 * 14 12 3 17 17 H 1.08996 * 117.25528 * 0.63988 * 16 14 12 18 18 C 1.52715 * 120.52225 * 149.25857 * 16 14 12 19 19 C 1.52878 * 110.15127 * 338.53309 * 18 16 14 20 20 C 1.53299 * 108.58409 * 54.51906 * 19 18 16 21 21 C 1.51667 * 108.14994 * 285.45475 * 20 19 18 22 22 H 1.08999 * 109.47435 * 56.91809 * 1 2 3 23 23 H 1.09001 * 109.47292 * 176.92459 * 1 2 3 24 24 H 1.08997 * 109.46723 * 296.91824 * 1 2 3 25 25 H 1.08996 * 109.46750 * 239.99634 * 2 1 3 26 26 H 1.08996 * 109.46710 * 119.99803 * 2 1 3 27 27 H 0.96996 * 119.99356 * 180.02562 * 7 6 4 28 28 H 1.09009 * 117.53294 * 213.90200 * 15 14 12 29 29 H 1.08993 * 117.54092 * 359.14688 * 15 14 12 30 30 H 1.09003 * 109.35392 * 98.74049 * 18 16 14 31 31 H 1.08993 * 109.35799 * 218.45992 * 18 16 14 32 32 H 1.09003 * 109.61891 * 174.24657 * 19 18 16 33 33 H 1.09001 * 109.62116 * 294.79152 * 19 18 16 34 34 H 1.09005 * 109.61775 * 45.28903 * 20 19 18 35 35 H 1.09003 * 109.61856 * 165.82372 * 20 19 18 36 36 H 1.08996 * 109.71728 * 294.55147 * 21 20 19 37 37 H 1.09003 * 108.15207 * 175.48544 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6882 1.8714 1.0911 5 1 2.6699 2.9299 1.3052 6 6 3.3906 1.0067 1.9215 7 7 3.7764 -0.1666 1.4726 8 14 3.7863 1.5118 3.6757 9 1 2.6849 1.0829 4.5748 10 1 5.0537 0.8664 4.1028 11 1 3.9348 2.9878 3.7444 12 6 1.8043 2.1716 -1.0705 13 8 2.3151 3.2704 -1.1249 14 6 0.9302 1.6903 -2.1998 15 6 -0.4983 2.2186 -2.2075 16 6 0.5290 2.7402 -3.2241 17 1 0.9067 3.7519 -3.0762 18 6 0.2879 2.3503 -4.6808 19 6 0.9959 1.0329 -4.9975 20 6 0.5380 -0.0235 -3.9853 21 6 1.2136 0.2686 -2.6593 22 1 -0.3634 0.5609 -0.8610 23 1 -0.3634 -1.0262 -0.0551 24 1 -0.3633 0.4652 0.9163 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.2664 -0.7704 2.0524 28 1 -1.2794 1.5537 -2.5764 29 1 -0.7923 2.8882 -1.3994 30 1 -0.7825 2.2353 -4.8516 31 1 0.6758 3.1325 -5.3332 32 1 0.7357 0.7106 -6.0058 33 1 2.0746 1.1695 -4.9211 34 1 -0.5447 0.0259 -3.8693 35 1 0.8263 -1.0148 -4.3352 36 1 2.2904 0.1301 -2.7568 37 1 0.8269 -0.4323 -1.9194 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000710531801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:10 Heat of formation + Delta-G solvation = 0.475278 kcal Electronic energy + Delta-G solvation = -18133.602604 eV Core-core repulsion = 15491.139345 eV Total energy + Delta-G solvation = -2642.463259 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.26162 -37.30006 -35.11604 -32.76752 -32.25765 -30.44746 -29.19285 -25.49124 -24.35111 -23.03133 -21.96226 -20.96238 -19.38153 -17.82261 -16.88272 -16.02651 -15.24051 -14.70193 -14.20687 -13.94519 -13.73645 -13.46704 -13.09767 -12.93876 -12.72306 -11.98125 -11.78501 -11.77310 -11.41644 -11.29220 -11.03727 -10.92584 -10.70030 -10.41889 -10.34567 -10.28610 -10.06624 -9.93319 -9.37761 -9.12269 -8.71135 -8.25921 -7.53326 -6.31512 -3.84369 3.17329 3.27096 3.32169 3.73771 4.15260 4.32836 4.77558 5.01206 5.04371 5.12378 5.18193 5.43940 5.45406 5.58851 5.68046 5.78296 5.90023 5.92619 6.05050 6.09070 6.13054 6.23130 6.28710 6.33074 6.40050 6.48201 6.54687 6.56330 6.69619 6.73462 6.79213 7.01675 7.39133 7.60970 8.23711 8.56529 9.23284 9.49407 10.08955 10.72943 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.039671 B = 0.007853 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.631658 B = 3564.813173 C = 3787.366705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 N -0.434 5.434 4 C -0.304 4.304 5 H 0.094 0.906 6 C 0.031 3.969 7 N -0.871 5.871 8 Si 0.919 3.081 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.269 1.269 12 C 0.480 3.520 13 O -0.587 6.587 14 C -0.113 4.113 15 C -0.166 4.166 16 C -0.127 4.127 17 H 0.110 0.890 18 C -0.085 4.085 19 C -0.121 4.121 20 C -0.120 4.120 21 C -0.101 4.101 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.111 0.889 27 H 0.267 0.733 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.108 -2.816 -7.941 11.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.033 4.033 3 N -0.151 5.151 4 C -0.432 4.432 5 H 0.112 0.888 6 C -0.173 4.173 7 N -0.510 5.510 8 Si 0.746 3.254 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.194 1.194 12 C 0.268 3.732 13 O -0.471 6.471 14 C -0.116 4.116 15 C -0.204 4.204 16 C -0.146 4.146 17 H 0.128 0.872 18 C -0.122 4.122 19 C -0.158 4.158 20 C -0.157 4.157 21 C -0.137 4.137 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.128 0.872 27 H 0.077 0.923 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.724 -2.447 -7.851 11.282 hybrid contribution 0.248 0.045 0.977 1.009 sum -7.476 -2.402 -6.874 10.436 Atomic orbital electron populations 1.22630 0.98682 1.00707 1.02576 1.21976 0.90956 0.85341 1.05000 1.43463 1.47905 1.10605 1.13150 1.19609 1.27984 0.95019 1.00544 0.88820 1.25277 0.95372 0.96159 1.00443 1.69964 1.35572 1.09808 1.35674 0.86032 0.77671 0.79141 0.82531 1.20386 1.21007 1.19392 1.19280 0.84780 0.86771 0.82393 1.90496 1.54007 1.22978 1.79652 1.20947 0.96839 0.95348 0.98468 1.23099 0.91399 1.03445 1.02416 1.22213 1.02395 0.99285 0.90678 0.87230 1.21038 0.99871 0.97210 0.94102 1.21601 1.00885 0.95270 0.98088 1.21449 1.00221 0.98360 0.95686 1.21237 1.01262 0.94183 0.97066 0.91327 0.93246 0.93122 0.91929 0.87152 0.92270 0.88762 0.89071 0.91980 0.91920 0.92475 0.91632 0.92055 0.91921 0.91211 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 8.63 37.16 0.32 -3.12 16 2 C 0.09 2.03 5.00 -4.04 -0.02 2.01 16 3 N -0.43 -11.30 2.71 -114.81 -0.31 -11.61 16 4 C -0.30 -8.64 9.11 -14.93 -0.14 -8.78 16 5 H 0.09 2.80 7.63 -52.48 -0.40 2.40 16 6 C 0.03 0.82 4.86 -17.47 -0.08 0.74 16 7 N -0.87 -23.56 11.10 55.50 0.62 -22.94 16 8 Si 0.92 20.90 29.60 -169.99 -5.03 15.87 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 C 0.48 12.19 6.87 -10.99 -0.08 12.11 16 13 O -0.59 -17.10 15.93 5.54 0.09 -17.01 16 14 C -0.11 -2.17 1.25 -156.96 -0.20 -2.37 16 15 C -0.17 -2.75 7.25 -26.75 -0.19 -2.94 16 16 C -0.13 -2.19 5.65 -90.90 -0.51 -2.71 16 17 H 0.11 2.12 7.55 -51.93 -0.39 1.73 16 18 C -0.08 -1.14 5.83 -26.94 -0.16 -1.30 16 19 C -0.12 -1.57 5.92 -26.64 -0.16 -1.73 16 20 C -0.12 -1.59 5.70 -27.25 -0.16 -1.74 16 21 C -0.10 -1.70 3.34 -27.88 -0.09 -1.79 16 22 H 0.07 1.18 3.28 -51.93 -0.17 1.01 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.06 1.33 4.83 -51.93 -0.25 1.08 16 26 H 0.11 2.72 5.33 -51.93 -0.28 2.44 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.09 1.31 7.25 -51.92 -0.38 0.93 16 29 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 30 H 0.06 0.73 8.06 -51.93 -0.42 0.32 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.94 8.03 -51.93 -0.42 0.53 16 34 H 0.06 0.75 7.11 -51.93 -0.37 0.38 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.31 7.92 -51.93 -0.41 0.90 16 37 H 0.09 1.54 3.78 -51.93 -0.20 1.35 16 LS Contribution 277.99 15.07 4.19 4.19 Total: -1.00 -30.92 277.99 -7.26 -38.18 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -5.35 Total: 4.95 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -1.46 Total: -11.61 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.30 Total: -34.56 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: 0.09 Total: -17.01 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.87 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.92 -7.26 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710531801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.656 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds