Wall clock time and date at job start Mon Mar 30 2020 03:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46498 * 109.47038 * 2 1 4 4 C 1.37093 * 119.99966 * 113.21945 * 3 2 1 5 5 H 1.08005 * 119.99563 * 206.98603 * 4 3 2 6 6 C 1.38952 * 120.00308 * 26.98982 * 4 3 2 7 7 N 1.31412 * 119.99513 * 21.53274 * 6 4 3 8 8 Si 1.86790 * 120.00085 * 201.53266 * 6 4 3 9 9 H 1.48505 * 109.47415 * 89.99994 * 8 6 4 10 10 H 1.48503 * 109.47389 * 209.99719 * 8 6 4 11 11 H 1.48503 * 109.47690 * 330.00211 * 8 6 4 12 12 C 1.34776 * 119.99703 * 293.49187 * 3 2 1 13 13 O 1.21297 * 120.00091 * 186.97027 * 12 3 2 14 14 C 1.50700 * 120.00255 * 6.97561 * 12 3 2 15 15 C 1.52306 * 115.91292 * 100.19748 * 14 12 3 16 16 C 1.52072 * 115.93105 * 168.48376 * 14 12 3 17 17 H 1.08996 * 117.25528 * 0.63988 * 16 14 12 18 18 C 1.52715 * 120.52225 * 149.25857 * 16 14 12 19 19 C 1.52878 * 110.15127 * 338.53309 * 18 16 14 20 20 C 1.53299 * 108.58409 * 54.51906 * 19 18 16 21 21 C 1.51667 * 108.14994 * 285.45475 * 20 19 18 22 22 H 1.08999 * 109.47435 * 56.91809 * 1 2 3 23 23 H 1.09001 * 109.47292 * 176.92459 * 1 2 3 24 24 H 1.08997 * 109.46723 * 296.91824 * 1 2 3 25 25 H 1.08996 * 109.46750 * 239.99634 * 2 1 3 26 26 H 1.08996 * 109.46710 * 119.99803 * 2 1 3 27 27 H 0.96996 * 119.99356 * 180.02562 * 7 6 4 28 28 H 1.09009 * 117.53294 * 213.90200 * 15 14 12 29 29 H 1.08993 * 117.54092 * 359.14688 * 15 14 12 30 30 H 1.09003 * 109.35392 * 98.74049 * 18 16 14 31 31 H 1.08993 * 109.35799 * 218.45992 * 18 16 14 32 32 H 1.09003 * 109.61891 * 174.24657 * 19 18 16 33 33 H 1.09001 * 109.62116 * 294.79152 * 19 18 16 34 34 H 1.09005 * 109.61775 * 45.28903 * 20 19 18 35 35 H 1.09003 * 109.61856 * 165.82372 * 20 19 18 36 36 H 1.08996 * 109.71728 * 294.55147 * 21 20 19 37 37 H 1.09003 * 108.15207 * 175.48544 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.6882 1.8714 1.0911 5 1 2.6699 2.9299 1.3052 6 6 3.3906 1.0067 1.9215 7 7 3.7764 -0.1666 1.4726 8 14 3.7863 1.5118 3.6757 9 1 2.6849 1.0829 4.5748 10 1 5.0537 0.8664 4.1028 11 1 3.9348 2.9878 3.7444 12 6 1.8043 2.1716 -1.0705 13 8 2.3151 3.2704 -1.1249 14 6 0.9302 1.6903 -2.1998 15 6 -0.4983 2.2186 -2.2075 16 6 0.5290 2.7402 -3.2241 17 1 0.9067 3.7519 -3.0762 18 6 0.2879 2.3503 -4.6808 19 6 0.9959 1.0329 -4.9975 20 6 0.5380 -0.0235 -3.9853 21 6 1.2136 0.2686 -2.6593 22 1 -0.3634 0.5609 -0.8610 23 1 -0.3634 -1.0262 -0.0551 24 1 -0.3633 0.4652 0.9163 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8900 27 1 4.2664 -0.7704 2.0524 28 1 -1.2794 1.5537 -2.5764 29 1 -0.7923 2.8882 -1.3994 30 1 -0.7825 2.2353 -4.8516 31 1 0.6758 3.1325 -5.3332 32 1 0.7357 0.7106 -6.0058 33 1 2.0746 1.1695 -4.9211 34 1 -0.5447 0.0259 -3.8693 35 1 0.8263 -1.0148 -4.3352 36 1 2.2904 0.1301 -2.7568 37 1 0.8269 -0.4323 -1.9194 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000710531801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:10 Heat of formation + Delta-G solvation = -18.251001 kcal Electronic energy + Delta-G solvation = -18134.414636 eV Core-core repulsion = 15491.139345 eV Total energy + Delta-G solvation = -2643.275291 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.81496 -38.99839 -37.09983 -34.31024 -33.87556 -32.02435 -30.76396 -27.40451 -25.67118 -24.67275 -23.51034 -22.27424 -20.97290 -19.26363 -18.88334 -17.70228 -17.16222 -16.33769 -15.86673 -15.62003 -15.12762 -14.93549 -14.60679 -14.20491 -14.18684 -13.66596 -13.52289 -13.24248 -12.95460 -12.93498 -12.66884 -12.49396 -12.23992 -12.14783 -11.94589 -11.65485 -11.54692 -11.28076 -10.89142 -10.67436 -10.32771 -10.21674 -9.57407 -8.38864 -6.01319 1.33333 1.37609 1.50043 1.92955 2.25638 2.77465 2.99833 3.13731 3.72107 3.80835 3.90104 4.02817 4.20536 4.35541 4.42661 4.45373 4.61411 4.64282 4.68555 4.75762 4.83711 4.91646 5.02876 5.06161 5.13409 5.23124 5.28465 5.33410 5.38424 5.39515 5.43653 5.48610 5.57307 5.64575 6.13539 6.51517 7.15351 7.49116 8.07668 8.63880 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.039671 B = 0.007853 C = 0.007391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.631658 B = 3564.813173 C = 3787.366705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.091 3.909 3 N -0.445 5.445 4 C -0.348 4.348 5 H 0.062 0.938 6 C 0.000 4.000 7 N -0.886 5.886 8 Si 0.986 3.014 9 H -0.261 1.261 10 H -0.272 1.272 11 H -0.278 1.278 12 C 0.460 3.540 13 O -0.644 6.644 14 C -0.129 4.129 15 C -0.143 4.143 16 C -0.128 4.128 17 H 0.075 0.925 18 C -0.079 4.079 19 C -0.121 4.121 20 C -0.112 4.112 21 C -0.095 4.095 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.275 0.725 28 H 0.138 0.862 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.038 0.962 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 -4.731 -9.028 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.032 4.032 3 N -0.162 5.162 4 C -0.476 4.476 5 H 0.080 0.920 6 C -0.202 4.202 7 N -0.524 5.524 8 Si 0.809 3.191 9 H -0.186 1.186 10 H -0.197 1.197 11 H -0.203 1.203 12 C 0.250 3.750 13 O -0.533 6.533 14 C -0.132 4.132 15 C -0.180 4.180 16 C -0.147 4.147 17 H 0.093 0.907 18 C -0.116 4.116 19 C -0.158 4.158 20 C -0.149 4.149 21 C -0.132 4.132 22 H 0.100 0.900 23 H 0.105 0.895 24 H 0.056 0.944 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.156 0.844 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.875 -4.411 -8.942 14.033 hybrid contribution 1.001 0.668 1.334 1.797 sum -8.874 -3.743 -7.608 12.273 Atomic orbital electron populations 1.22521 0.95179 1.03194 1.02506 1.22082 0.93827 0.83141 1.04103 1.43771 1.47662 1.11985 1.12802 1.19551 1.30777 0.94255 1.03033 0.92023 1.26055 0.94398 0.95970 1.03783 1.70029 1.35038 1.10311 1.36988 0.85067 0.78276 0.78215 0.77572 1.18588 1.19694 1.20309 1.20424 0.85008 0.86028 0.83527 1.90434 1.56417 1.25366 1.81056 1.20825 0.97773 0.97277 0.97342 1.23220 0.90612 1.02758 1.01376 1.22308 1.01964 0.97071 0.93352 0.90699 1.21090 1.01932 0.97759 0.90804 1.21619 0.99351 0.94951 0.99904 1.21457 1.01147 0.99385 0.92940 1.21158 0.99874 0.92348 0.99780 0.90047 0.89499 0.94366 0.91123 0.89571 0.91494 0.84409 0.90737 0.88843 0.91279 0.89139 0.94123 0.89584 0.89874 0.94348 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.16 8.63 71.98 0.62 -5.54 16 2 C 0.09 4.11 5.00 86.38 0.43 4.54 16 3 N -0.45 -24.27 2.71 -635.53 -1.72 -25.99 16 4 C -0.35 -20.89 9.11 84.04 0.77 -20.12 16 5 H 0.06 3.99 7.63 -2.91 -0.02 3.96 16 6 C 0.00 0.01 4.86 84.93 0.41 0.42 16 7 N -0.89 -48.58 11.10 21.66 0.24 -48.34 16 8 Si 0.99 43.58 29.60 68.60 2.03 45.61 16 9 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 12 C 0.46 24.58 6.87 87.66 0.60 25.18 16 13 O -0.64 -40.36 15.93 -3.08 -0.05 -40.41 16 14 C -0.13 -4.96 1.25 -53.77 -0.07 -5.03 16 15 C -0.14 -4.43 7.25 30.58 0.22 -4.21 16 16 C -0.13 -4.34 5.65 -10.98 -0.06 -4.40 16 17 H 0.07 3.05 7.55 -2.39 -0.02 3.03 16 18 C -0.08 -1.86 5.83 30.46 0.18 -1.68 16 19 C -0.12 -2.72 5.92 30.65 0.18 -2.54 16 20 C -0.11 -2.50 5.70 30.26 0.17 -2.33 16 21 C -0.09 -3.06 3.34 29.85 0.10 -2.96 16 22 H 0.08 2.61 3.28 -2.39 -0.01 2.61 16 23 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 3.03 4.83 -2.39 -0.01 3.02 16 26 H 0.09 4.31 5.33 -2.39 -0.01 4.29 16 27 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 28 H 0.14 3.10 7.25 -2.38 -0.02 3.08 16 29 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.09 1.69 8.06 -2.39 -0.02 1.67 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.11 8.03 -2.39 -0.02 1.09 16 34 H 0.09 1.56 7.11 -2.38 -0.02 1.54 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.04 1.45 7.92 -2.39 -0.02 1.43 16 37 H 0.10 2.99 3.78 -2.39 -0.01 2.98 16 Total: -1.00 -72.90 277.99 5.12 -67.79 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 1.06 Total: 20.01 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: 3.56 Total: -18.67 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -1.48 Total: -74.33 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.05 Total: -40.41 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -72.90 5.12 -67.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000710531801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.537 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds