Wall clock time and date at job start Mon Mar 30 2020 03:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 5 5 H 1.08002 * 120.00022 * 120.00506 * 4 2 1 6 6 C 1.37879 * 120.00302 * 300.00004 * 4 2 1 7 7 N 1.31514 * 119.99861 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99937 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46577 * 89.99872 * 8 6 4 10 10 H 1.48495 * 109.47267 * 209.99969 * 8 6 4 11 11 H 1.48494 * 109.47095 * 330.00340 * 8 6 4 12 12 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 13 13 C 1.34777 * 119.99525 * 84.99977 * 12 2 1 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 2 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 H 1.09004 * 115.54873 * 29.33026 * 16 15 13 18 18 C 1.52991 * 117.49969 * 243.62366 * 16 15 13 19 19 C 1.53003 * 117.49995 * 174.99760 * 16 15 13 20 20 H 1.08997 * 117.49898 * 359.97438 * 19 16 15 21 21 C 1.52999 * 117.49842 * 214.97825 * 19 16 15 22 22 C 1.52998 * 117.49845 * 128.62192 * 21 19 16 23 23 C 1.52999 * 60.00178 * 252.51272 * 22 21 19 24 24 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 26 26 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 27 27 H 0.97000 * 119.99653 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00580 * 265.00723 * 12 2 1 29 29 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 30 30 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 31 31 H 1.09000 * 117.50132 * 359.97438 * 18 16 15 32 32 H 1.09001 * 117.50696 * 145.02062 * 18 16 15 33 33 H 1.09000 * 115.55001 * 274.33151 * 21 19 16 34 34 H 1.09002 * 117.49682 * 0.02562 * 22 21 19 35 35 H 1.08999 * 117.49836 * 145.01855 * 22 21 19 36 36 H 1.08999 * 117.49429 * 252.51358 * 23 22 21 37 37 H 1.09001 * 117.51795 * 107.48104 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 2.1379 -0.8588 3.5567 8 14 0.6259 1.2801 2.6540 9 1 -0.8021 0.8748 2.6991 10 1 0.9771 1.9957 3.9069 11 1 0.8492 2.1775 1.4921 12 7 2.0185 -0.6908 -1.1960 13 6 2.1472 -0.0185 -2.3570 14 8 1.8591 1.1584 -2.4116 15 6 2.6554 -0.7275 -3.5859 16 6 2.7122 0.2568 -4.7558 17 1 2.8861 1.2985 -4.4858 18 6 1.8057 -0.0202 -5.9568 19 6 3.3153 -0.2423 -6.0704 20 1 3.6720 -1.2718 -6.1017 21 6 4.1158 0.7590 -6.9056 22 6 5.5161 0.3412 -7.3586 23 6 5.3496 1.3916 -6.2587 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8898 26 1 -0.3633 0.5137 -0.8900 27 1 1.9032 -0.5275 4.4376 28 1 2.2491 -1.6319 -1.1524 29 1 3.6539 -1.1197 -3.3923 30 1 1.9842 -1.5494 -3.8349 31 1 1.1692 -0.9040 -5.9136 32 1 1.3829 0.8392 -6.4772 33 1 3.5304 1.3784 -7.5853 34 1 5.8669 -0.6473 -7.0620 35 1 5.8523 0.6854 -8.3367 36 1 5.5763 2.4269 -6.5133 37 1 5.5909 1.0946 -5.2381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712907870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:58 Heat of formation + Delta-G solvation = 1.895217 kcal Electronic energy + Delta-G solvation = -16480.615330 eV Core-core repulsion = 13838.213645 eV Total energy + Delta-G solvation = -2642.401686 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.40683 -38.28490 -35.56978 -34.81378 -32.37724 -30.49915 -28.49370 -25.16849 -23.75101 -22.56390 -22.01062 -20.52911 -19.74359 -19.48396 -17.25385 -16.10625 -15.69116 -15.53125 -15.10500 -14.75941 -14.05662 -13.83428 -13.24791 -13.00319 -12.74642 -12.24705 -12.18356 -11.77054 -11.72222 -11.50696 -11.22389 -11.17258 -10.90261 -10.79740 -10.68553 -10.17319 -9.87247 -9.69439 -9.51900 -9.21201 -9.03623 -8.74295 -8.11093 -6.20045 -4.22335 3.24061 3.30179 3.36291 3.41376 3.47489 3.91896 4.01104 4.32884 4.52176 4.73196 4.80661 4.96866 5.02880 5.14887 5.22606 5.31320 5.40264 5.51143 5.60875 5.73936 5.76644 5.81119 5.89454 5.99187 6.07680 6.15126 6.33239 6.40096 6.46717 6.58696 6.88456 7.22250 7.33426 7.55049 8.18253 8.56860 8.77563 9.00044 9.41377 10.92204 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.044850 B = 0.004575 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.158302 B = 6118.606317 C = 6229.349645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.704 5.704 13 C 0.505 3.495 14 O -0.556 6.556 15 C -0.113 4.113 16 C -0.123 4.123 17 H 0.119 0.881 18 C -0.170 4.170 19 C -0.127 4.127 20 H 0.104 0.896 21 C -0.122 4.122 22 C -0.179 4.179 23 C -0.176 4.176 24 H 0.052 0.948 25 H 0.046 0.954 26 H 0.035 0.965 27 H 0.267 0.733 28 H 0.395 0.605 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 -0.220 -18.834 19.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.065 0.935 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.352 5.352 13 C 0.290 3.710 14 O -0.435 6.435 15 C -0.153 4.153 16 C -0.141 4.141 17 H 0.137 0.863 18 C -0.207 4.207 19 C -0.145 4.145 20 H 0.122 0.878 21 C -0.141 4.141 22 C -0.216 4.216 23 C -0.213 4.213 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.228 0.772 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.112 0.888 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.375 0.616 -18.634 18.795 hybrid contribution -0.528 0.200 0.323 0.650 sum 1.848 0.816 -18.311 18.422 Atomic orbital electron populations 1.22443 0.99401 1.00771 0.99254 1.19082 0.90086 0.94675 0.82955 0.93454 1.21061 1.33201 1.14392 0.88602 0.90239 1.24838 0.95508 0.96715 0.95526 1.69872 1.44961 1.40174 0.98034 0.86864 0.80509 0.83631 0.77415 1.20320 1.22163 1.18668 1.46199 1.65362 1.13815 1.09861 1.20435 0.78354 0.87513 0.84714 1.90632 1.51426 1.16262 1.85182 1.21250 1.02778 0.98315 0.92967 1.22170 1.03437 1.00942 0.87588 0.86258 1.23129 0.92150 1.03061 1.02362 1.21881 0.94757 0.98614 0.99217 0.87796 1.21728 0.89546 1.00991 1.01786 1.22967 0.99517 1.00011 0.99108 1.22973 1.01979 0.97964 0.98392 0.92886 0.93530 0.94569 0.92310 0.77222 0.88935 0.89319 0.88885 0.88902 0.87903 0.88830 0.89084 0.88996 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.97 37.16 0.33 -3.32 16 2 C 0.24 5.70 2.15 -69.08 -0.15 5.55 16 3 H 0.05 1.27 6.63 -51.93 -0.34 0.92 16 4 C -0.53 -14.59 9.31 -34.44 -0.32 -14.91 16 5 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 7 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 8 Si 0.89 22.00 24.37 -169.99 -4.14 17.86 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 11 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 12 N -0.70 -14.04 5.07 -54.93 -0.28 -14.32 16 13 C 0.50 9.48 7.79 -10.98 -0.09 9.39 16 14 O -0.56 -12.58 15.23 5.55 0.08 -12.49 16 15 C -0.11 -1.51 5.98 -27.88 -0.17 -1.68 16 16 C -0.12 -1.61 5.06 -90.62 -0.46 -2.07 16 17 H 0.12 1.86 7.30 -51.93 -0.38 1.48 16 18 C -0.17 -1.89 9.90 -26.73 -0.26 -2.15 16 19 C -0.13 -1.33 5.59 -90.62 -0.51 -1.84 16 20 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 21 C -0.12 -1.21 5.87 -90.62 -0.53 -1.74 16 22 C -0.18 -1.55 10.25 -26.73 -0.27 -1.83 16 23 C -0.18 -1.74 10.18 -26.73 -0.27 -2.01 16 24 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 25 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.39 6.85 8.54 -40.82 -0.35 6.51 16 29 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 30 H 0.09 1.01 7.87 -51.93 -0.41 0.60 16 31 H 0.09 0.94 8.03 -51.93 -0.42 0.53 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 304.99 15.07 4.60 4.60 Total: -1.00 -31.25 304.99 -7.66 -38.91 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.90 Total: 5.78 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -2.79 Total: -14.50 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.50 Total: -40.16 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.49 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.25 -7.66 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712907870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.806 kcal (2) G-P(sol) polarization free energy of solvation -31.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds