Wall clock time and date at job start Mon Mar 30 2020 03:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.46796 * 2 1 4 4 C 1.50701 * 109.46578 * 119.99326 * 2 1 3 5 5 H 1.08002 * 120.00022 * 120.00506 * 4 2 1 6 6 C 1.37879 * 120.00302 * 300.00004 * 4 2 1 7 7 N 1.31514 * 119.99861 * 180.02562 * 6 4 2 8 8 Si 1.86801 * 119.99937 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.46577 * 89.99872 * 8 6 4 10 10 H 1.48495 * 109.47267 * 209.99969 * 8 6 4 11 11 H 1.48494 * 109.47095 * 330.00340 * 8 6 4 12 12 N 1.46497 * 109.47335 * 239.99136 * 2 1 3 13 13 C 1.34777 * 119.99525 * 84.99977 * 12 2 1 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 2 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 2 16 16 C 1.53004 * 109.47208 * 180.27843 * 15 13 12 17 17 H 1.09004 * 115.54873 * 29.33026 * 16 15 13 18 18 C 1.52991 * 117.49969 * 243.62366 * 16 15 13 19 19 C 1.53003 * 117.49995 * 174.99760 * 16 15 13 20 20 H 1.08997 * 117.49898 * 359.97438 * 19 16 15 21 21 C 1.52999 * 117.49842 * 214.97825 * 19 16 15 22 22 C 1.52998 * 117.49845 * 128.62192 * 21 19 16 23 23 C 1.52999 * 60.00178 * 252.51272 * 22 21 19 24 24 H 1.08994 * 109.47201 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47273 * 300.00977 * 1 2 3 26 26 H 1.08998 * 109.46811 * 60.00625 * 1 2 3 27 27 H 0.97000 * 119.99653 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00580 * 265.00723 * 12 2 1 29 29 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 30 30 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 31 31 H 1.09000 * 117.50132 * 359.97438 * 18 16 15 32 32 H 1.09001 * 117.50696 * 145.02062 * 18 16 15 33 33 H 1.09000 * 115.55001 * 274.33151 * 21 19 16 34 34 H 1.09002 * 117.49682 * 0.02562 * 22 21 19 35 35 H 1.08999 * 117.49836 * 145.01855 * 22 21 19 36 36 H 1.08999 * 117.49429 * 252.51358 * 23 22 21 37 37 H 1.09001 * 117.51795 * 107.48104 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1317 6 6 1.6991 -0.2391 2.4828 7 7 2.1379 -0.8588 3.5567 8 14 0.6259 1.2801 2.6540 9 1 -0.8021 0.8748 2.6991 10 1 0.9771 1.9957 3.9069 11 1 0.8492 2.1775 1.4921 12 7 2.0185 -0.6908 -1.1960 13 6 2.1472 -0.0185 -2.3570 14 8 1.8591 1.1584 -2.4116 15 6 2.6554 -0.7275 -3.5859 16 6 2.7122 0.2568 -4.7558 17 1 2.8861 1.2985 -4.4858 18 6 1.8057 -0.0202 -5.9568 19 6 3.3153 -0.2423 -6.0704 20 1 3.6720 -1.2718 -6.1017 21 6 4.1158 0.7590 -6.9056 22 6 5.5161 0.3412 -7.3586 23 6 5.3496 1.3916 -6.2587 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8898 26 1 -0.3633 0.5137 -0.8900 27 1 1.9032 -0.5275 4.4376 28 1 2.2491 -1.6319 -1.1524 29 1 3.6539 -1.1197 -3.3923 30 1 1.9842 -1.5494 -3.8349 31 1 1.1692 -0.9040 -5.9136 32 1 1.3829 0.8392 -6.4772 33 1 3.5304 1.3784 -7.5853 34 1 5.8669 -0.6473 -7.0620 35 1 5.8523 0.6854 -8.3367 36 1 5.5763 2.4269 -6.5133 37 1 5.5909 1.0946 -5.2381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712907870.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:57 Heat of formation + Delta-G solvation = -17.921579 kcal Electronic energy + Delta-G solvation = -16481.474651 eV Core-core repulsion = 13838.213645 eV Total energy + Delta-G solvation = -2643.261007 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.78486 -39.33239 -36.91678 -36.16787 -34.39302 -32.18588 -29.81247 -27.22594 -24.60215 -23.59927 -23.19655 -21.84520 -21.06005 -20.61494 -19.06252 -17.74816 -17.33098 -16.61922 -16.24308 -16.16666 -15.59773 -14.99092 -14.80706 -14.61429 -14.13237 -14.03563 -13.70890 -13.30776 -12.96978 -12.79795 -12.49183 -12.31133 -12.15147 -12.12013 -11.72878 -11.63104 -11.48286 -11.28440 -10.88262 -10.76053 -10.68483 -10.27905 -9.84349 -8.39087 -6.44760 1.26215 1.34599 1.44246 1.82213 2.25415 2.42673 2.76966 2.97229 3.11400 3.67493 3.85481 3.89219 4.06689 4.18849 4.27611 4.39020 4.44807 4.53243 4.58801 4.62488 4.70863 4.77615 4.83274 4.85109 4.96391 5.02262 5.06596 5.28150 5.30940 5.32620 5.33626 5.43042 5.47098 5.68256 6.14253 6.57139 6.92010 7.19239 7.50789 8.76195 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.044850 B = 0.004575 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.158302 B = 6118.606317 C = 6229.349645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.240 3.760 3 H 0.019 0.981 4 C -0.534 4.534 5 H 0.058 0.942 6 C 0.029 3.971 7 N -0.933 5.933 8 Si 0.939 3.061 9 H -0.259 1.259 10 H -0.291 1.291 11 H -0.265 1.265 12 N -0.704 5.704 13 C 0.501 3.499 14 O -0.597 6.597 15 C -0.098 4.098 16 C -0.148 4.148 17 H 0.087 0.913 18 C -0.166 4.166 19 C -0.106 4.106 20 H 0.121 0.879 21 C -0.134 4.134 22 C -0.163 4.163 23 C -0.190 4.190 24 H 0.066 0.934 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.270 0.730 28 H 0.408 0.592 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 -0.917 -20.813 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.135 3.865 3 H 0.037 0.963 4 C -0.572 4.572 5 H 0.076 0.924 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.766 3.234 9 H -0.184 1.184 10 H -0.219 1.219 11 H -0.190 1.190 12 N -0.353 5.353 13 C 0.289 3.711 14 O -0.479 6.479 15 C -0.137 4.137 16 C -0.166 4.166 17 H 0.105 0.895 18 C -0.203 4.203 19 C -0.124 4.124 20 H 0.139 0.861 21 C -0.153 4.153 22 C -0.200 4.200 23 C -0.228 4.228 24 H 0.085 0.915 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.243 0.757 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.127 0.873 32 H 0.110 0.890 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.953 -0.109 -20.637 20.730 hybrid contribution -0.319 0.411 0.896 1.036 sum 1.634 0.302 -19.741 19.811 Atomic orbital electron populations 1.22330 0.97888 1.01674 0.99311 1.18739 0.91202 0.93080 0.83519 0.96348 1.21280 1.32345 1.13591 0.89954 0.92420 1.25552 0.96839 0.99294 0.95370 1.69974 1.46661 1.41944 0.98648 0.86002 0.79865 0.80379 0.77105 1.18440 1.21869 1.19036 1.46068 1.65632 1.14430 1.09195 1.21385 0.77046 0.87114 0.85534 1.90615 1.53052 1.18360 1.85892 1.21236 1.04139 0.98409 0.89956 1.22011 1.06619 0.99358 0.88642 0.89524 1.23235 0.92817 1.03621 1.00608 1.21945 0.94483 0.99327 0.96632 0.86091 1.21819 0.90049 1.01314 1.02070 1.23055 0.97959 0.99810 0.99136 1.22983 1.02669 0.98767 0.98333 0.91531 0.94208 0.93704 0.92031 0.75657 0.86949 0.86325 0.87334 0.88994 0.87569 0.88080 0.87652 0.88669 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.79 8.97 71.98 0.65 -6.14 16 2 C 0.24 11.55 2.15 44.25 0.10 11.64 16 3 H 0.02 1.01 6.63 -2.39 -0.02 0.99 16 4 C -0.53 -29.32 9.31 25.60 0.24 -29.08 16 5 H 0.06 3.35 7.98 -2.91 -0.02 3.32 16 6 C 0.03 1.66 5.45 84.66 0.46 2.12 16 7 N -0.93 -56.17 13.96 21.45 0.30 -55.87 16 8 Si 0.94 45.27 24.37 68.60 1.67 46.94 16 9 H -0.26 -11.68 6.87 99.48 0.68 -10.99 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.27 -12.86 6.53 99.48 0.65 -12.21 16 12 N -0.70 -27.48 5.07 -446.08 -2.26 -29.74 16 13 C 0.50 18.40 7.79 87.66 0.68 19.08 16 14 O -0.60 -27.21 15.23 -3.04 -0.05 -27.26 16 15 C -0.10 -2.40 5.98 29.85 0.18 -2.22 16 16 C -0.15 -3.65 5.06 -10.79 -0.05 -3.71 16 17 H 0.09 2.75 7.30 -2.38 -0.02 2.73 16 18 C -0.17 -3.30 9.90 30.59 0.30 -2.99 16 19 C -0.11 -1.96 5.59 -10.79 -0.06 -2.02 16 20 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 21 C -0.13 -2.40 5.87 -10.79 -0.06 -2.46 16 22 C -0.16 -2.42 10.25 30.59 0.31 -2.10 16 23 C -0.19 -3.57 10.18 30.60 0.31 -3.25 16 24 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 25 H 0.04 1.79 3.27 -2.39 -0.01 1.79 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 28 H 0.41 13.65 8.54 -92.71 -0.79 12.86 16 29 H 0.11 2.32 8.14 -2.38 -0.02 2.31 16 30 H 0.12 2.23 7.87 -2.39 -0.02 2.21 16 31 H 0.11 1.82 8.03 -2.39 -0.02 1.80 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -67.76 304.99 2.90 -64.86 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.18 Total: 22.21 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 3.05 Total: -21.14 kcal Atomic # 7 Polarization: -83.65 SS G_CDS: -1.96 Total: -85.61 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.26 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.67 Total: 46.94 kcal Total: -67.76 2.90 -64.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712907870.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.938 kcal (2) G-P(sol) polarization free energy of solvation -67.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds