Wall clock time and date at job start Mon Mar 30 2020 04:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46491 * 120.00453 * 2 1 4 4 C 1.50702 * 109.46957 * 90.00133 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72213 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48501 * 109.47188 * 90.00793 * 8 6 4 10 10 H 1.48501 * 109.47085 * 210.00372 * 8 6 4 11 11 H 1.48498 * 109.47634 * 330.00608 * 8 6 4 12 12 C 1.34780 * 119.99526 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99673 * 179.97438 * 12 2 1 14 14 C 1.50700 * 120.00400 * 359.97438 * 12 2 1 15 15 C 1.52994 * 109.47577 * 179.97438 * 14 12 2 16 16 H 1.09006 * 115.54580 * 330.67483 * 15 14 12 17 17 C 1.52996 * 117.50133 * 116.37852 * 15 14 12 18 18 C 1.52998 * 60.00144 * 107.49293 * 17 15 14 19 19 H 1.08998 * 117.51718 * 252.52493 * 18 17 15 20 20 C 1.52999 * 117.49799 * 107.49049 * 18 17 15 21 21 C 1.52992 * 117.50075 * 180.12722 * 20 18 17 22 22 C 1.52994 * 117.49743 * 111.46750 * 20 18 17 23 23 H 1.09000 * 109.47583 * 89.99529 * 1 2 3 24 24 H 1.09005 * 109.47610 * 210.00002 * 1 2 3 25 25 H 1.09006 * 109.46979 * 329.99538 * 1 2 3 26 26 H 1.09004 * 109.47166 * 330.00399 * 3 2 1 27 27 H 1.08994 * 109.47507 * 210.00106 * 3 2 1 28 28 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47359 * 300.00599 * 14 12 2 30 30 H 1.09008 * 109.46888 * 59.99948 * 14 12 2 31 31 H 1.08996 * 117.50542 * 214.98409 * 17 15 14 32 32 H 1.09004 * 117.49717 * 359.97438 * 17 15 14 33 33 H 1.09007 * 115.54997 * 325.79958 * 20 18 17 34 34 H 1.09005 * 117.50140 * 0.02562 * 21 20 18 35 35 H 1.08999 * 117.50310 * 145.01894 * 21 20 18 36 36 H 1.09004 * 117.49789 * 214.97812 * 22 20 18 37 37 H 1.08997 * 117.50022 * 359.97438 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4487 1.7036 1.4208 5 1 2.0982 1.0956 2.2418 6 6 3.1316 2.8746 1.6728 7 7 3.5589 3.6147 0.6732 8 14 3.4497 3.4098 3.4340 9 1 4.7439 2.8472 3.8962 10 1 3.5032 4.8924 3.4987 11 1 2.3550 2.9154 4.3071 12 6 2.1388 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3852 -2.4724 -0.0005 15 6 2.3793 -3.6354 -0.0018 16 1 3.3362 -3.4353 -0.4841 17 6 2.3810 -4.5647 1.2135 18 6 1.8107 -5.0508 -0.1203 19 1 0.7283 -5.1534 -0.1978 20 6 2.6288 -6.0773 -0.9064 21 6 2.0600 -6.5612 -2.2416 22 6 2.0591 -7.4921 -1.0266 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5139 26 1 1.6084 2.0283 -0.5138 27 1 3.1499 1.1383 -0.5138 28 1 4.0390 4.4388 0.8505 29 1 0.7589 -2.5303 0.8896 30 1 0.7582 -2.5299 -0.8903 31 1 3.3390 -4.9762 1.5312 32 1 1.6741 -4.3473 2.0143 33 1 3.7113 -5.9756 -0.8277 34 1 1.1030 -6.1479 -2.5605 35 1 2.7681 -6.7782 -3.0414 36 1 2.7668 -8.3212 -1.0275 37 1 1.1017 -7.6918 -0.5454 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712981662.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:05 Heat of formation + Delta-G solvation = 3.851096 kcal Electronic energy + Delta-G solvation = -16469.019327 eV Core-core repulsion = 13826.702454 eV Total energy + Delta-G solvation = -2642.316873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.28634 -38.15283 -35.54581 -34.66999 -32.59447 -29.60200 -27.37248 -25.61888 -23.68903 -22.91877 -22.44199 -20.67674 -20.06823 -18.28132 -16.51552 -16.34043 -15.62771 -15.42728 -14.87238 -14.73769 -14.11657 -13.54092 -13.31895 -12.76363 -12.39241 -12.15952 -11.82897 -11.75155 -11.71545 -11.51195 -11.21592 -11.17415 -10.98915 -10.83776 -10.67564 -10.53078 -10.13233 -9.71711 -9.59840 -9.38129 -8.79890 -8.41172 -7.59257 -6.01976 -4.06618 3.32708 3.38208 3.39554 3.43619 3.54272 3.99208 4.18142 4.42908 4.50088 4.76567 4.84656 5.03106 5.14924 5.20756 5.28659 5.31897 5.41270 5.49719 5.57243 5.73064 5.75567 5.83227 5.86637 5.96997 5.97686 6.00020 6.09591 6.23786 6.26348 6.54790 7.10210 7.48065 7.58973 7.94862 8.26640 8.47941 8.93579 9.16430 9.58493 11.06107 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041443 B = 0.004595 C = 0.004445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.458006 B = 6092.747860 C = 6297.909626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.505 3.495 13 O -0.541 6.541 14 C -0.110 4.110 15 C -0.122 4.122 16 H 0.118 0.882 17 C -0.169 4.169 18 C -0.126 4.126 19 H 0.101 0.899 20 C -0.118 4.118 21 C -0.179 4.179 22 C -0.180 4.180 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.397 -17.037 -2.959 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.338 5.338 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.292 3.708 13 O -0.419 6.419 14 C -0.150 4.150 15 C -0.141 4.141 16 H 0.136 0.864 17 C -0.206 4.206 18 C -0.144 4.144 19 H 0.119 0.881 20 C -0.136 4.136 21 C -0.216 4.216 22 C -0.217 4.217 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.665 -16.829 -3.005 18.348 hybrid contribution 0.073 0.439 1.018 1.111 sum -6.592 -16.390 -1.987 17.778 Atomic orbital electron populations 1.21623 0.81578 1.02491 1.00319 1.48160 1.06098 1.07912 1.71612 1.19271 0.92560 0.78204 0.97433 1.21452 1.36278 1.06356 0.92358 0.92509 1.24945 0.95385 0.96402 0.97436 1.69939 1.38325 1.14487 1.30708 0.86496 0.78780 0.77503 0.84623 1.20543 1.21146 1.19943 1.20264 0.88141 0.85063 0.77336 1.90648 1.14010 1.87168 1.50046 1.21254 0.97991 0.92483 1.03243 1.22153 1.01092 0.88614 1.02230 0.86355 1.23077 1.02632 1.03699 0.91226 1.21847 0.98141 0.94884 0.99572 0.88062 1.21726 0.98782 0.94282 0.98852 1.22934 1.03026 1.04036 0.91554 1.22937 1.02876 0.93366 1.02563 0.93822 0.92517 0.90861 0.95089 0.93879 0.92745 0.89526 0.89384 0.88845 0.88878 0.87798 0.88781 0.88920 0.89022 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.35 10.24 59.84 0.61 1.96 16 2 N -0.61 -13.14 2.86 -182.96 -0.52 -13.66 16 3 C 0.24 6.56 5.16 -5.20 -0.03 6.53 16 4 C -0.53 -15.22 9.39 -34.44 -0.32 -15.54 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.51 10.72 7.67 -10.98 -0.08 10.64 16 13 O -0.54 -13.92 15.14 5.55 0.08 -13.83 16 14 C -0.11 -1.65 4.53 -27.89 -0.13 -1.77 16 15 C -0.12 -1.78 5.13 -90.62 -0.47 -2.24 16 16 H 0.12 2.01 7.31 -51.93 -0.38 1.63 16 17 C -0.17 -2.14 9.90 -26.73 -0.26 -2.40 16 18 C -0.13 -1.45 5.57 -90.62 -0.50 -1.95 16 19 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 20 C -0.12 -1.25 5.84 -90.63 -0.53 -1.78 16 21 C -0.18 -1.66 10.25 -26.70 -0.27 -1.93 16 22 C -0.18 -1.59 10.25 -26.70 -0.27 -1.87 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 25 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 26 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.09 1.16 7.14 -51.93 -0.37 0.79 16 30 H 0.09 1.12 8.11 -51.92 -0.42 0.70 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.09 1.10 8.03 -51.93 -0.42 0.68 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 313.39 15.07 4.72 4.72 Total: -1.00 -33.02 313.39 -8.43 -41.45 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.07 Total: -0.82 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -2.36 Total: -8.72 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.21 Total: -39.94 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.08 Total: -13.83 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.02 -8.43 -41.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712981662.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.301 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds